Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

32730414 .. 32740841

Gene Structure 10428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG274500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAATCAAATTCGTTTGCAACAGATAGGTGAACTTGAAAATTTGAATCAGAGGAAAGCAATACTGACCAGTTCACGCGCCGCCGAAGTGCGGTGGCCGATAAGCGCTGATGAGGAGACGGAAAGTTGCCTGCGTTTTTCCGGTGAAGATTTTTGTGCTGATTTGGTTCGCGGTGCCAAGGACAGGAGGCTCAGGGTGAAGGGACTAGTGAAGATGCCTACCAAGGTTCTGCACATTACCACCAGGAAGTCACCCTGTGGAGAAGGTACCAACACATGGGACAGATTTGAGTTGCATGGGCATAAGCGTGTTATTGATCTCTTCAGCTCTCCTGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

113

Amino Acids

12.91

Weight (kDa)

8.96

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	49 - 109	7.5e-15	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	2 cut(s)	173, 266
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccII	CGCG	2 cut(s)	78, 171
AciI	CCGC	3 cut(s)	81, 91, 171
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	9, 40
AcuI	CTGAAG	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	268
AfeI	AGCGCT	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	90, 183, 276
AgsI	TTSAA	2 cut(s)	38, 46
AhlI	ACTAGT	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	1 cut(s)	327
AluI	AGCT	1 cut(s)	327
Alw26I	GTCTC	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	106
AoxI	GGCC	1 cut(s)	95
ApoI	RAATTY	2 cut(s)	9, 40
Asp718I	GGTACC	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	80, 107
AsuHPI	GGTGA	4 cut(s)	41, 155, 208, 243
BanI	GGYRCC	2 cut(s)	173, 266
BciT130I	CCWGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	110
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	175, 268
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	177, 222
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 183, 276
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	2 cut(s)	177, 222
BseLI	CCNNNNNNNGG	3 cut(s)	90, 183, 276
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	2 cut(s)	78, 171
BshFI	GGCC	1 cut(s)	97
BshNI	GGYRCC	2 cut(s)	173, 266
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	216, 293
BslI	CCNNNNNNNGG	3 cut(s)	90, 183, 276
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	216, 293
BsnI	GGCC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	3 cut(s)	81, 91, 171
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	204
BspFNI	CGCG	2 cut(s)	78, 171
BspLI	GGNNCC	2 cut(s)	175, 268
BspT107I	GGYRCC	2 cut(s)	173, 266
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	177, 222
BssMI	GATC	1 cut(s)	316
BssT1I	CCWWGG	2 cut(s)	177, 222
Bst2UI	CCWGG	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	191
BstFNI	CGCG	2 cut(s)	78, 171
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	80, 107
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	316
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstUI	CGCG	2 cut(s)	78, 171
BsuRI	GGCC	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	2 cut(s)	80, 107
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	2 cut(s)	276, 296
CviJI	RGCY	3 cut(s)	97, 190, 327
CviKI_1	RGCY	3 cut(s)	97, 190, 327
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DraIII	CACNNNGTG	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Eco130I	CCWWGG	2 cut(s)	177, 222
Eco47III	AGCGCT	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	242
EcoT14I	CCWWGG	2 cut(s)	177, 222
ErhI	CCWWGG	2 cut(s)	177, 222
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	2 cut(s)	279, 299
FaiI	YATR	3 cut(s)	277, 297, 303
FaqI	GGGAC	2 cut(s)	216, 293
FatI	CATG	2 cut(s)	275, 295
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	2 cut(s)	79, 106
GluI	GCNGC	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	2 cut(s)	80, 107
Hin1II	CATG	2 cut(s)	279, 299
Hin6I	GCGC	2 cut(s)	78, 105
HinP1I	GCGC	2 cut(s)	78, 105
HinfI	GANTC	2 cut(s)	4, 46
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	4 cut(s)	41, 155, 208, 243
Hpy166II	GTNNAC	2 cut(s)	32, 74
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	2 cut(s)	32, 74
HpyAV	CCTTC	2 cut(s)	193, 257
HpyCH4V	TGCA	3 cut(s)	19, 232, 295
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	279, 299
HspAI	GCGC	2 cut(s)	78, 105
KpnI	GGTACC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	316
LpnPI	CCDG	8 cut(s)	82, 143, 154, 169, 178, 229, 256, 268
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	3 cut(s)	158, 223, 313
MluCI	AATT	2 cut(s)	9, 40
MnlI	CCTC	3 cut(s)	45, 106, 180
MslI	CAYNNNNRTG	1 cut(s)	306
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	2 cut(s)	78, 171
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	2 cut(s)	279, 299
NlaIV	GGNNCC	2 cut(s)	175, 268
NmuCI	GTSAC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	4, 46
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	2 cut(s)	175, 268
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	306
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	244
SetI	ASST	4 cut(s)	31, 228, 268, 329
SfaNI	GCATC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	306
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	2 cut(s)	9, 40
SsiI	CCGC	3 cut(s)	81, 91, 171
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	2 cut(s)	177, 222
TasI	AATT	2 cut(s)	9, 40
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	4, 46
TseFI	GTSAC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	134
Van91I	CCANNNNNTGG	1 cut(s)	276
XapI	RAATTY	2 cut(s)	9, 40
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.