Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Forward (+)

64780183 .. 64781984

Gene Structure 1802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG482700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGGGATGCCTACGAAGGTTCTGCACATTACCACCAGGAAGTCTCCCTGTGGAGAAGGTACTAATACATGGGACAGATTTGAGTTGCGTGTGCACAAGCGTGTTATTGATCTCTTCAGCTCTCCTGATGTTGTGAAGCAGATCACCTCCATTACAATTGAACCTGGTGGGCGTCACAATTGCCGAAAGTTGAAGACTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

67

Amino Acids

7.7

Weight (kDa)

10.03

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	3 - 55	8.5e-14	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	172
AfaI	GTAC	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	161, 193
AjnI	CCWGG	2 cut(s)	35, 163
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	48
Alw44I	GTGCAC	1 cut(s)	92
ApaLI	GTGCAC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	96
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	2 cut(s)	37, 165
BcoDI	GTCTC	1 cut(s)	48
Bme1390I	CCNGG	2 cut(s)	37, 165
BmrFI	CCNGG	2 cut(s)	37, 165
BpiI	GAAGAC	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	37, 165
BseGI	GGATG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	96
BsgI	GTGCAG	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	109, 141
BssMI	GATC	2 cut(s)	109, 141
BssNI	GRCGYC	1 cut(s)	172
Bst2UI	CCWGG	2 cut(s)	37, 165
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	2 cut(s)	112, 144
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	2 cut(s)	109, 141
BstNI	CCWGG	2 cut(s)	37, 165
BstSCI	CCNGG	2 cut(s)	35, 163
BstSLI	GKGCMC	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	12
CseI	GACGC	1 cut(s)	161
CsiI	ACCWGGT	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	1 cut(s)	120
CviKI_1	RGCY	1 cut(s)	120
CviQI	GTAC	1 cut(s)	60
DpnI	GATC	2 cut(s)	111, 143
DpnII	GATC	2 cut(s)	109, 141
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	35, 163
FaeI	CATG	1 cut(s)	72
FaiI	YATR	1 cut(s)	70
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	1 cut(s)	68
FokI	GGATG	1 cut(s)	19
HgaI	GACGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	10, 50
HpyCH4V	TGCA	2 cut(s)	25, 94
Hsp92I	GRCGYC	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	109, 141
LpnPI	CCDG	6 cut(s)	22, 49, 61, 138, 150, 177
MabI	ACCWGGT	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	2 cut(s)	111, 143
MboI	GATC	2 cut(s)	109, 141
MboII	GAAGA	1 cut(s)	106
MfeI	CAATTG	2 cut(s)	156, 178
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	2 cut(s)	156, 178
MnlI	CCTC	1 cut(s)	157
MslI	CAYNNNNRTG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	37, 165
MunI	CAATTG	2 cut(s)	156, 178
MvaI	CCWGG	2 cut(s)	37, 165
NdeII	GATC	2 cut(s)	109, 141
NlaIII	CATG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	173
OliI	CACNNNNGTG	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	35, 163
PspGI	CCWGG	2 cut(s)	35, 163
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	109, 141
ScrFI	CCNGG	2 cut(s)	37, 165
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	5 cut(s)	21, 61, 122, 149, 166
SexAI	ACCWGGT	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	2 cut(s)	156, 178
StyD4I	CCNGG	2 cut(s)	35, 163
TasI	AATT	2 cut(s)	156, 178
TseFI	GTSAC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.