Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011129.1

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

3507 .. 4666

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011129.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggctacggcggcataccaagttcccaccaagtctgcaaagcttggtttggaggagcaaaaccaagagccgattcgtaagattaggatcacactctcctccaagaaagtgaagaacgttgagaaaggttgtctatcacatccatatttttgggtttatgatctcataaagagagccaaggaacatcctgattccatcaggtctaagggtccagtgcggatgcccactaagactcttcgcatcactactaggaaggccccttgtggagaagggaccaacacctgggataggttcgagatgcgtatacacaaaagagtgatcgacctcttcaccactccagggacagtcaggaagattactgaaattgacatggaaccaggcgtggaggttgaagttactattggtgacatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

137

Amino Acids

15.65

Weight (kDa)

9.66

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	304
AciI	CCGC	2 cut(s)	11, 217
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	1 cut(s)	95
AfiI	CCNNNNNNNGG	3 cut(s)	282, 288, 339
AgsI	TTSAA	1 cut(s)	392
AjnI	CCWGG	3 cut(s)	281, 337, 376
AjuI	GAANNNNNNNTTGG	3 cut(s)	57, 89, 384
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	255
AspS9I	GGNCC	3 cut(s)	209, 256, 273
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	209, 273
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	3 cut(s)	283, 339, 378
BfaI	CTAG	1 cut(s)	249
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	283, 339, 378
Bme18I	GGWCC	2 cut(s)	209, 273
BmgT120I	GGNCC	3 cut(s)	209, 256, 273
BmiI	GGNNCC	4 cut(s)	210, 258, 274, 375
BmrFI	CCNGG	3 cut(s)	283, 339, 378
BmsI	GCATC	3 cut(s)	210, 249, 288
BpmI	CTGGAG	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	177, 282, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 288, 339
Bse1I	ACTGG	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	86
BseBI	CCWGG	3 cut(s)	283, 339, 378
BseDI	CCNNGG	3 cut(s)	177, 282, 338
BseGI	GGATG	3 cut(s)	139, 184, 225
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	3 cut(s)	282, 288, 339
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	2 cut(s)	68, 88
BshFI	GGCC	1 cut(s)	257
BslFI	GGGAC	2 cut(s)	286, 355
BslI	CCNNNNNNNGG	3 cut(s)	282, 288, 339
BsmFI	GGGAC	2 cut(s)	286, 355
BsnI	GGCC	1 cut(s)	257
Bsp143I	GATC	3 cut(s)	87, 160, 318
BspACI	CCGC	2 cut(s)	11, 217
BspANI	GGCC	1 cut(s)	257
BspLI	GGNNCC	4 cut(s)	210, 258, 274, 375
BspPI	GGATC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	3 cut(s)	177, 282, 338
BssMI	GATC	3 cut(s)	87, 160, 318
BssNAI	GTATAC	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	177
Bst1107I	GTATAC	1 cut(s)	305
Bst2UI	CCWGG	3 cut(s)	283, 339, 378
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	240, 332
BstDEI	CTNAG	2 cut(s)	204, 228
BstENI	CCTNNNNNAGG	1 cut(s)	286
BstF5I	GGATG	3 cut(s)	139, 184, 225
BstKTI	GATC	3 cut(s)	90, 163, 321
BstMBI	GATC	3 cut(s)	87, 160, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	3 cut(s)	283, 339, 378
BstSCI	CCNGG	3 cut(s)	281, 337, 376
BstXI	CCANNNNNNTGG	1 cut(s)	150
BstZ17I	GTATAC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	3 cut(s)	139, 184, 225
BtsIMutI	CAGTG	1 cut(s)	219
Cfr13I	GGNCC	3 cut(s)	209, 256, 273
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	5 cut(s)	5, 43, 70, 176, 257
CviKI_1	RGCY	5 cut(s)	5, 43, 70, 176, 257
DdeI	CTNAG	2 cut(s)	204, 228
DpnI	GATC	3 cut(s)	89, 162, 320
DpnII	GATC	3 cut(s)	87, 160, 318
Eam1104I	CTCTTC	2 cut(s)	240, 332
EarI	CTCTTC	2 cut(s)	240, 332
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	209, 273
EcoNI	CCTNNNNNAGG	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	3 cut(s)	281, 337, 376
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	373
FaiI	YATR	6 cut(s)	16, 145, 159, 167, 305, 371
FaqI	GGGAC	2 cut(s)	286, 355
FatI	CATG	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	3 cut(s)	126, 171, 232
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	257
Hin1II	CATG	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	3 cut(s)	73, 191, 232
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188III	TCNNGA	3 cut(s)	188, 295, 349
Hpy8I	GTNNAC	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	247, 263
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	204, 228
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	87, 160, 318
LmnI	GCTCC	1 cut(s)	55
LweI	GCATC	3 cut(s)	210, 249, 288
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	394, 404
MalI	GATC	3 cut(s)	89, 162, 320
MboI	GATC	3 cut(s)	87, 160, 318
MboII	GAAGA	4 cut(s)	124, 227, 319, 364
MluCI	AATT	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	4 cut(s)	46, 109, 335, 379
MspR9I	CCNGG	3 cut(s)	283, 339, 378
MvaI	CCWGG	3 cut(s)	283, 339, 378
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	87, 160, 318
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	4 cut(s)	210, 258, 274, 375
NmuCI	GTSAC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	73, 191
PflMI	CCANNNNNTGG	1 cut(s)	282
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	3 cut(s)	281, 337, 376
PspGI	CCWGG	3 cut(s)	281, 337, 376
PspN4I	GGNNCC	4 cut(s)	210, 258, 274, 375
PspPI	GGNCC	3 cut(s)	209, 256, 273
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	87, 160, 318
Sau96I	GGNCC	3 cut(s)	209, 256, 273
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	3 cut(s)	283, 339, 378
SetI	ASST	8 cut(s)	45, 120, 130, 203, 284, 293, 327, 390
SfaNI	GCATC	3 cut(s)	210, 249, 288
SinI	GGWCC	2 cut(s)	209, 273
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	2 cut(s)	11, 217
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	3 cut(s)	281, 337, 376
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	294, 321
TasI	AATT	1 cut(s)	363
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	73, 191
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	404
TspRI	CASTG	1 cut(s)	219
Van91I	CCANNNNNTGG	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	209, 273
XagI	CCTNNNNNAGG	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	304
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.