Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Forward (+)

1294009 .. 1294774

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G012000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCACCCTCCCTCTTCTCTCTACTGCCCCTTTGCCCCTGCATTGTTTGCACTGAACTGCTTCGTGGTGCAAAGGACAAGAGGCTCCGGGTTAAGGGACCCATGAGAATGCCAACCAAGGTTCTGCACATTACCACCAGGGAGTCCCCTTGTGGTGAAAGGACCAACACATGGGACAGAGTTGAGTTGCGTGTCCACAAAATGGTGATTGACCTTTTCAATTCTCCTGATGTCGTCAAGCAAATTACTTCCATCACAATTGAACCTAGTGTGGAACTGGAGGTTACAAACGCATACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

101

Amino Acids

11.32

Weight (kDa)

8.82

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	171, 202
AfiI	CCNNNNNNNGG	3 cut(s)	94, 171, 202
AgsI	TTSAA	2 cut(s)	220, 263
AjnI	CCWGG	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	98, 162
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	167, 217
AvaII	GGWCC	2 cut(s)	98, 162
BanI	GGYRCC	1 cut(s)	4
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	89
BfaI	CTAG	1 cut(s)	267
Bme1390I	CCNGG	2 cut(s)	89, 139
Bme18I	GGWCC	2 cut(s)	98, 162
BmgT120I	GGNCC	2 cut(s)	98, 162
BmiI	GGNNCC	4 cut(s)	6, 86, 99, 100
BmrFI	CCNGG	2 cut(s)	89, 139
BpmI	CTGGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	117, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 171, 202
Bse1I	ACTGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	117, 138
BseLI	CCNNNNNNNGG	3 cut(s)	94, 171, 202
BseNI	ACTGG	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	110
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	88
BslFI	GGGAC	3 cut(s)	111, 130, 188
BslI	CCNNNNNNNGG	3 cut(s)	94, 171, 202
BsmFI	GGGAC	3 cut(s)	111, 130, 188
BsmI	GAATGC	1 cut(s)	114
BspLI	GGNNCC	4 cut(s)	6, 86, 99, 100
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	117, 138
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	87, 137
BtsIMutI	CAGTG	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	98, 162
CviAII	CATG	2 cut(s)	103, 171
CviJI	RGCY	1 cut(s)	85
CviKI_1	RGCY	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	98, 162
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	106, 174
FaiI	YATR	3 cut(s)	104, 172, 295
FaqI	GGGAC	3 cut(s)	111, 130, 188
FatI	CATG	2 cut(s)	102, 170
FspBI	CTAG	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	299
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	2 cut(s)	106, 174
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	2 cut(s)	167, 217
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	42, 51, 71, 127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	106, 174
KflI	GGGWCCC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	6 cut(s)	52, 101, 124, 151, 240, 263
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	7
MfeI	CAATTG	1 cut(s)	258
MluCI	AATT	3 cut(s)	220, 243, 258
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	4 cut(s)	19, 23, 75, 274
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	2 cut(s)	93, 301
MslI	CAYNNNNRTG	1 cut(s)	107
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	2 cut(s)	89, 139
MunI	CAATTG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	48
NciI	CCSGG	1 cut(s)	89
NlaIII	CATG	2 cut(s)	106, 174
NlaIV	GGNNCC	4 cut(s)	6, 86, 99, 100
PctI	GAATGC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	60
PflMI	CCANNNNNTGG	2 cut(s)	171, 202
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	4 cut(s)	6, 86, 99, 100
PspPI	GGNCC	2 cut(s)	98, 162
PspPPI	RGGWCCY	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	93, 301
Sau96I	GGNCC	2 cut(s)	98, 162
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	89, 139
SetI	ASST	4 cut(s)	123, 216, 268, 285
SinI	GGWCC	2 cut(s)	98, 162
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	220, 243, 258
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	87, 137
StyI	CCWWGG	1 cut(s)	117
TasI	AATT	3 cut(s)	220, 243, 258
Tru1I	TTAA	2 cut(s)	93, 301
Tru9I	TTAA	2 cut(s)	93, 301
TscAI	CASTG	1 cut(s)	58
TspRI	CASTG	1 cut(s)	58
Van91I	CCANNNNNTGG	2 cut(s)	171, 202
VpaK11BI	GGWCC	2 cut(s)	98, 162
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.