Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

12332320 .. 12333349

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36861

Sequence Viewer

CDS Protein Promoter (2k)

Length: 126 bp

ATGGCTTACGCAGCGATGAAACCCACCAAGCCTGGTCTCGAGGAGACGCCGGAGCAGATCCAGAAGATCAGGATCACTCTCTCTTCCAAGAACGTCAAGAACCTCGAGAAAGTTTGTGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

41

Amino Acids

4.58

Weight (kDa)

8.93

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	52, 80
AcyI	GRCGYC	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	31
Alw26I	GTCTC	2 cut(s)	38, 41
AlwI	GGATC	2 cut(s)	52, 80
Ama87I	CYCGRG	2 cut(s)	38, 104
ApeKI	GCWGC	1 cut(s)	11
AvaI	CYCGRG	2 cut(s)	38, 104
BbvI	GCAGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	38, 41
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	33
BmeT110I	CYCGRG	2 cut(s)	38, 104
BmrFI	CCNGG	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	33
BseJI	GATNNNNATC	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	23
BsiHKCI	CYCGRG	2 cut(s)	38, 104
BsiSI	CCGG	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	38, 41
BsmBI	CGTCTC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	38, 104
Bsp143I	GATC	3 cut(s)	57, 66, 72
BspPI	GGATC	2 cut(s)	52, 80
BspTNI	GGTCTC	1 cut(s)	41
BssMI	GATC	3 cut(s)	57, 66, 72
BssNI	GRCGYC	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	60, 69, 75
BstMAI	GTCTC	2 cut(s)	38, 41
BstMBI	GATC	3 cut(s)	57, 66, 72
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	29
CseI	GACGC	1 cut(s)	55
CviJI	RGCY	2 cut(s)	5, 31
CviKI_1	RGCY	2 cut(s)	5, 31
DpnI	GATC	3 cut(s)	59, 68, 74
DpnII	GATC	3 cut(s)	57, 66, 72
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	41
Eco88I	CYCGRG	2 cut(s)	38, 104
EcoRII	CCWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
HapII	CCGG	1 cut(s)	50
HgaI	GACGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	50
Hpy188III	TCNNGA	5 cut(s)	38, 61, 70, 97, 106
HpyCH4IV	ACGT	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	47
Kzo9I	GATC	3 cut(s)	57, 66, 72
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	5 cut(s)	18, 45, 55, 63, 74
Lsp1109I	GCAGC	1 cut(s)	23
MaeII	ACGT	1 cut(s)	93
MalI	GATC	3 cut(s)	59, 68, 74
MboI	GATC	3 cut(s)	57, 66, 72
MboII	GAAGA	2 cut(s)	75, 76
MflI	RGATCY	1 cut(s)	57
MnlI	CCTC	2 cut(s)	34, 113
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	57, 66, 72
PaeR7I	CTCGAG	2 cut(s)	38, 104
PkrI	GCNGC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	57
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	57, 66, 72
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	2 cut(s)	96, 105
Sfr274I	CTCGAG	2 cut(s)	38, 104
SlaI	CTCGAG	2 cut(s)	38, 104
SmlI	CTYRAG	2 cut(s)	38, 104
SmoI	CTYRAG	2 cut(s)	38, 104
StyD4I	CCNGG	1 cut(s)	31
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	39, 105
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	32
XhoI	CTCGAG	2 cut(s)	38, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.