Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Forward (+)

35529358 .. 35530391

Gene Structure 1034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G025040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCGTTGGTGGTGAGGGTCCGACCTCGGGGGAACTGCGGCGGCGGTGGCTGTGGCGAGGTGCAGCTGCTAGCTTGGACCGGCGTTTGTGCTGATTTGGTTCGCGGTGCCAAGGACAGGAGGCTCAGGGTGAAGGGACCAGTGAAGATGCCTACCAAGTTTCTGCACATTACCACCAGGAAGTCACCCTGTGGAGAAGGTACCAACACATGGGACAGATTTGAGTTGCGTGGGCATAAGCGTGTTATTGATCTCTTCAGCTCTCCTGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

91

Amino Acids

10.03

Weight (kDa)

10.29

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	29 - 87	4.4e-16	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	200
AccB1I	GGYRCC	2 cut(s)	107, 200
AccB7I	CCANNNNNTGG	1 cut(s)	210
AccII	CGCG	1 cut(s)	105
AciI	CCGC	4 cut(s)	39, 42, 45, 105
AcuI	CTGAAG	1 cut(s)	241
AdeI	CACNNNGTG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	3 cut(s)	28, 117, 210
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	3 cut(s)	67, 74, 261
AluI	AGCT	3 cut(s)	67, 74, 261
Ama87I	CYCGRG	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	64, 67
Asp718I	GGTACC	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	19, 78, 137
AsuHPI	GGTGA	3 cut(s)	25, 142, 177
AsuNHI	GCTAGC	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	3 cut(s)	19, 78, 137
BanI	GGYRCC	2 cut(s)	107, 200
BbvI	GCAGC	2 cut(s)	54, 76
BciT130I	CCWGG	1 cut(s)	178
BfaI	CTAG	1 cut(s)	71
BisI	GCNGC	4 cut(s)	40, 43, 65, 68
BlsI	GCNGC	4 cut(s)	41, 44, 66, 69
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	3 cut(s)	19, 78, 137
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	3 cut(s)	19, 78, 137
BmiI	GGNNCC	4 cut(s)	20, 109, 138, 202
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	138
BmtI	GCTAGC	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	26, 111
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 117, 210
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	26, 111
BseLI	CCNNNNNNNGG	3 cut(s)	28, 117, 210
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	54, 76
BsgI	GTGCAG	2 cut(s)	83, 149
Bsh1236I	CGCG	1 cut(s)	105
BshNI	GGYRCC	2 cut(s)	107, 200
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	2 cut(s)	150, 227
BslI	CCNNNNNNNGG	3 cut(s)	28, 117, 210
BsmFI	GGGAC	2 cut(s)	150, 227
BsoBI	CYCGRG	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	4 cut(s)	39, 42, 45, 105
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	4 cut(s)	20, 109, 138, 202
BspOI	GCTAGC	1 cut(s)	74
BspT107I	GGYRCC	2 cut(s)	107, 200
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	26, 111
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	125
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	176
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	54, 76
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	19, 78, 137
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	1 cut(s)	210
CviJI	RGCY	5 cut(s)	51, 67, 74, 124, 261
CviKI_1	RGCY	5 cut(s)	51, 67, 74, 124, 261
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DraIII	CACNNNGTG	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	111
Eco47I	GGWCC	3 cut(s)	19, 78, 137
Eco57I	CTGAAG	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	1 cut(s)	213
FaiI	YATR	2 cut(s)	211, 237
FaqI	GGGAC	2 cut(s)	150, 227
FatI	CATG	1 cut(s)	209
Fnu4HI	GCNGC	4 cut(s)	40, 43, 65, 68
Fsp4HI	GCNGC	4 cut(s)	40, 43, 65, 68
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	4 cut(s)	40, 43, 65, 68
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	1 cut(s)	213
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	3 cut(s)	25, 142, 177
Hpy188I	TCNGA	1 cut(s)	23
Hpy188III	TCNNGA	1 cut(s)	266
HpyAV	CCTTC	2 cut(s)	127, 191
HpyCH4V	TGCA	2 cut(s)	64, 166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	213
KpnI	GGTACC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	7 cut(s)	94, 103, 112, 153, 163, 190, 202
Lsp1109I	GCAGC	2 cut(s)	54, 76
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	157, 247
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	4 cut(s)	9, 36, 52, 114
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	48
NdeII	GATC	1 cut(s)	250
NheI	GCTAGC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	213
NlaIV	GGNNCC	4 cut(s)	20, 109, 138, 202
NmuCI	GTSAC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	210
PkrI	GCNGC	4 cut(s)	41, 44, 66, 69
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	4 cut(s)	20, 109, 138, 202
PspPI	GGNCC	3 cut(s)	19, 78, 137
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	240
SatI	GCNGC	4 cut(s)	40, 43, 65, 68
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	3 cut(s)	19, 78, 137
ScrFI	CCNGG	1 cut(s)	178
SetI	ASST	6 cut(s)	28, 63, 69, 76, 202, 263
SfaNI	GCATC	1 cut(s)	138
SinI	GGWCC	3 cut(s)	19, 78, 137
SmiMI	CAYNNNNRTG	1 cut(s)	240
SsiI	CCGC	4 cut(s)	39, 42, 45, 105
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	111
TauI	GCSGC	2 cut(s)	42, 45
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	2 cut(s)	64, 67
Tsp45I	GTSAC	1 cut(s)	183
TspRI	CASTG	1 cut(s)	147
Van91I	CCANNNNNTGG	1 cut(s)	210
VpaK11BI	GGWCC	3 cut(s)	19, 78, 137
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.