Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

38020624 .. 38022047

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0329100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGGAATAGGGACTATATAGATGAAATGTCTACTGGAAATGCTAGTGTGCTTACTACAGTGTTGAAAATGATTGATAAGTACGATCTTTATGGGCAAGTGGCCTATCCAAAGCATCACAAGCAATCAGATGTTCCAGATATTTACCGGCTTGCAGCAAAAACGAAGGGAGTTTTCATAAATCCAGCATTAGTGGAACCATTTGGGCTAACCTTGATTGAGGCGGCAGCACACGGGCTTCCGATGGTGGCTACAAAAAATGGTGGACCGGTTGATATACATCGGTATCGTGCCAATGAGTTGTTAGTACTGACAGATAAGCAAATAGTTGCCAAGGTGACATCTTACCTGTCAAAGGGCATCAAGGACTTCGAGAATGCTGCTGTGATAAATAAGGACAAGTTTTATGTTTTCCTGCTCTATGTATTTATATGCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

146

Amino Acids

16.29

Weight (kDa)

8.56

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_1	PF00534	19 - 120	1.1e-12	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	43 - 116	2.6e-09	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	1 cut(s)	224
AfaI	GTAC	2 cut(s)	83, 309
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgeI	ACCGGT	1 cut(s)	268
AgsI	TTSAA	1 cut(s)	67
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	3 cut(s)	155, 227, 380
AsiGI	ACCGGT	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	266
BaeI	ACNNNNGTAYC	2 cut(s)	269, 302
BbvI	GCAGC	3 cut(s)	167, 239, 367
BccI	CCATC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	4 cut(s)	156, 225, 228, 381
BlsI	GCNGC	4 cut(s)	157, 226, 229, 382
BmcAI	AGTACT	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	198
BmsI	GCATC	2 cut(s)	124, 369
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse118I	RCCGGY	2 cut(s)	147, 268
Bse1I	ACTGG	1 cut(s)	40
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	333
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	167, 239, 367
BshFI	GGCC	1 cut(s)	104
BshTI	ACCGGT	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	148, 269
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	198
BsrFI	RCCGGY	2 cut(s)	147, 268
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	2 cut(s)	147, 268
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	438
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	3 cut(s)	167, 239, 367
BsuRI	GGCC	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	153
Cfr10I	RCCGGY	2 cut(s)	147, 268
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	82, 308
CspAI	ACCGGT	1 cut(s)	268
CviJI	RGCY	5 cut(s)	104, 151, 208, 238, 251
CviKI_1	RGCY	5 cut(s)	104, 151, 208, 238, 251
CviQI	GTAC	2 cut(s)	82, 308
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaiI	YATR	9 cut(s)	18, 20, 93, 179, 278, 408, 423, 431, 433
FaqI	GGGAC	1 cut(s)	26
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	4 cut(s)	156, 225, 228, 381
Fsp4HI	GCNGC	4 cut(s)	156, 225, 228, 381
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	4 cut(s)	156, 225, 228, 381
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	2 cut(s)	148, 269
HpaII	CCGG	2 cut(s)	148, 269
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	33, 266
Hpy188I	TCNGA	2 cut(s)	130, 243
Hpy188III	TCNNGA	2 cut(s)	137, 373
Hpy8I	GTNNAC	2 cut(s)	33, 266
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	155, 435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	438
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	7 cut(s)	21, 150, 161, 198, 282, 362, 428
Lsp1109I	GCAGC	3 cut(s)	167, 239, 367
LweI	GCATC	2 cut(s)	124, 369
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MnlI	CCTC	1 cut(s)	214
MspI	CCGG	2 cut(s)	148, 269
Mva1269I	GAATGC	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	337
PctI	GAATGC	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	268
PkrI	GCNGC	4 cut(s)	157, 226, 229, 382
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	2 cut(s)	83, 309
RsaNI	GTAC	2 cut(s)	82, 308
SatI	GCNGC	4 cut(s)	156, 225, 228, 381
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	309
SetI	ASST	3 cut(s)	215, 339, 351
SfaNI	GCATC	2 cut(s)	124, 369
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	266
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	372
TatI	WGTACW	1 cut(s)	307
TauI	GCSGC	1 cut(s)	227
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	3 cut(s)	155, 227, 380
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	39, 166
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.