Prupe.5G059500_v2.0.a1

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000823
Physical Location & Seq
Forward (+)
6427211 .. 6428565
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G059500.1

Sequence Viewer

Length: 204 bp
ATGATTAAGAATTCAGATTTTTCTTGTTATATTTCTTTAGCCTGCTGGATTGACACTGTTATATTGATAGTTTGCACTGATCTGGTTCGTGGTGCAAAGAACAAGAGGCTCCGGGTTAAGGGACCCGTGAGAATGCCAACCAAGGTTCTGCACATTACCACCAGGAAGTCCCCTTGTGGTGAAGGTACCAACACATGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S10

Protein Analysis

68

Amino Acids

7.55

Weight (kDa)

9.56

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 195
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 2 cut(s) 118, 195
AjnI CCWGG 1 cut(s) 161
ApoI RAATTY 1 cut(s) 10
Asp718I GGTACC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 163
BcnI CCSGG 1 cut(s) 113
Bme1390I CCNGG 2 cut(s) 113, 163
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 4 cut(s) 110, 123, 124, 187
BmrFI CCNGG 2 cut(s) 113, 163
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 195
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 118, 195
BsgI GTGCAG 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 2 cut(s) 135, 154
BslI CCNNNNNNNGG 2 cut(s) 118, 195
BsmFI GGGAC 2 cut(s) 135, 154
BsmI GAATGC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 79
BspLI GGNNCC 4 cut(s) 110, 123, 124, 187
BspT107I GGYRCC 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 43
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 111, 161
BtsIMutI CAGTG 2 cut(s) 54, 75
Cac8I GCNNGC 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 186
CviAII CATG 1 cut(s) 195
CviJI RGCY 2 cut(s) 41, 109
CviKI_1 RGCY 2 cut(s) 41, 109
CviQI GTAC 1 cut(s) 186
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 1 cut(s) 198
FaiI YATR 3 cut(s) 30, 62, 196
FaqI GGGAC 2 cut(s) 135, 154
FatI CATG 1 cut(s) 194
HapII CCGG 1 cut(s) 112
Hin1II CATG 1 cut(s) 198
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 75, 95, 151
Hsp92II CATG 1 cut(s) 198
KflI GGGWCCC 1 cut(s) 122
KpnI GGTACC 1 cut(s) 189
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 6 cut(s) 31, 55, 68, 125, 148, 175
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MluCI AATT 1 cut(s) 10
MnlI CCTC 1 cut(s) 99
MseI TTAA 2 cut(s) 6, 117
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 113, 163
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 1 cut(s) 163
NciI CCSGG 1 cut(s) 113
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 198
NlaIV GGNNCC 4 cut(s) 110, 123, 124, 187
PctI GAATGC 1 cut(s) 138
PflMI CCANNNNNTGG 1 cut(s) 195
PpuMI RGGWCCY 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 4 cut(s) 110, 123, 124, 187
PspPI GGNCC 1 cut(s) 122
PspPPI RGGWCCY 1 cut(s) 122
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 6, 117
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 113, 163
SetI ASST 2 cut(s) 147, 187
SinI GGWCC 1 cut(s) 122
Sse9I AATT 1 cut(s) 10
StyD4I CCNGG 2 cut(s) 111, 161
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 58
TasI AATT 1 cut(s) 10
Tru1I TTAA 2 cut(s) 6, 117
Tru9I TTAA 2 cut(s) 6, 117
TscAI CASTG 2 cut(s) 61, 82
TspRI CASTG 2 cut(s) 61, 82
Van91I CCANNNNNTGG 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.