Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

68127558 .. 68131672

Gene Structure 4115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG421700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCTTACGCAGCGATGAAACCCACCAAGCCTGGTCTCGAGGAGACGCCGGAGCAGATCCAGAAGATCAGTATCACTCTCTCTTCCAAGAACGTCAAGAACCTCGAGAAAGGTACCAACACATGGGACATATTTGAGTTGCGTGGGCACAAGCGTGTTATTGATCTCTTCAGCTCTCCTGATGTTGTGAAGCAGATCACCTCCATTACAATTGAACCTGGTGTCGAAGTGGAGGTCACAATTGCCAACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

84

Amino Acids

9.35

Weight (kDa)

5.76

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	36 - 80	9.3e-08	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	123
AclWI	GGATC	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	215
AjnI	CCWGG	2 cut(s)	31, 217
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	38, 41
AlwI	GGATC	1 cut(s)	52
Ama87I	CYCGRG	2 cut(s)	38, 104
ApeKI	GCWGC	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
Asp718I	GGTACC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	190
AvaI	CYCGRG	2 cut(s)	38, 104
BaeGI	GKGCMC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	33, 219
BcoDI	GTCTC	2 cut(s)	38, 41
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	33, 219
BmeT110I	CYCGRG	2 cut(s)	38, 104
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	2 cut(s)	33, 219
BsaBI	GATNNNNATC	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	33, 219
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	113
BsiHKCI	CYCGRG	2 cut(s)	38, 104
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	38, 41
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	38, 104
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	57, 66, 163, 195
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	41
BssMI	GATC	4 cut(s)	57, 66, 163, 195
BssNI	GRCGYC	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	33, 219
Bst6I	CTCTTC	2 cut(s)	88, 173
BstACI	GRCGYC	1 cut(s)	47
BstKTI	GATC	4 cut(s)	60, 69, 166, 198
BstMAI	GTCTC	2 cut(s)	38, 41
BstMBI	GATC	4 cut(s)	57, 66, 163, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	33, 219
BstSCI	CCNGG	2 cut(s)	31, 217
BstSLI	GKGCMC	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	29
CseI	GACGC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	1 cut(s)	123
CviJI	RGCY	3 cut(s)	5, 31, 174
CviKI_1	RGCY	3 cut(s)	5, 31, 174
CviQI	GTAC	1 cut(s)	114
DpnI	GATC	4 cut(s)	59, 68, 165, 197
DpnII	GATC	4 cut(s)	57, 66, 163, 195
Eam1104I	CTCTTC	2 cut(s)	88, 173
EarI	CTCTTC	2 cut(s)	88, 173
Eco31I	GGTCTC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	154
Eco88I	CYCGRG	2 cut(s)	38, 104
EcoRII	CCWGG	2 cut(s)	31, 217
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	1 cut(s)	126
FaiI	YATR	2 cut(s)	124, 131
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
HapII	CCGG	1 cut(s)	50
HgaI	GACGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	126
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	190
Hpy188III	TCNNGA	5 cut(s)	38, 61, 97, 106, 179
HpyCH4IV	ACGT	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	126
KpnI	GGTACC	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	57, 66, 163, 195
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	7 cut(s)	18, 45, 63, 74, 192, 204, 231
Lsp1109I	GCAGC	1 cut(s)	23
MabI	ACCWGGT	1 cut(s)	217
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	4 cut(s)	59, 68, 165, 197
MboI	GATC	4 cut(s)	57, 66, 163, 195
MboII	GAAGA	3 cut(s)	75, 76, 160
MfeI	CAATTG	2 cut(s)	210, 240
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	210, 240
MnlI	CCTC	4 cut(s)	34, 113, 211, 226
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	33, 219
MunI	CAATTG	2 cut(s)	210, 240
MvaI	CCWGG	2 cut(s)	33, 219
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	57, 66, 163, 195
NlaIII	CATG	1 cut(s)	126
NlaIV	GGNNCC	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	235
OliI	CACNNNNGTG	1 cut(s)	153
PaeR7I	CTCGAG	2 cut(s)	38, 104
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	31, 217
PspGI	CCWGG	2 cut(s)	31, 217
PspN4I	GGNNCC	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	153
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	57, 66, 163, 195
ScrFI	CCNGG	2 cut(s)	33, 219
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	7 cut(s)	96, 105, 115, 176, 203, 220, 237
SexAI	ACCWGGT	1 cut(s)	217
Sfr274I	CTCGAG	2 cut(s)	38, 104
SlaI	CTCGAG	2 cut(s)	38, 104
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	2 cut(s)	38, 104
SmoI	CTYRAG	2 cut(s)	38, 104
Sse9I	AATT	2 cut(s)	210, 240
StyD4I	CCNGG	2 cut(s)	31, 217
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	39, 105, 225
TasI	AATT	2 cut(s)	210, 240
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	123
XhoI	CTCGAG	2 cut(s)	38, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.