Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

32341503 .. 32343306

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1256900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGTACGCAGCGATGAAGCCGACCAAACCAGGTCTTGAGGAGTCTCAGGAGCAGATCCACAAGATCAGGATTACTCTTTCTTCCAAGAACGTCAAGAACCTCGAGAAAGTTTGCACTGATCTGGTTCGTGGTGCCAAGGACAAGCGCCTCAGGGTGAAGGGACCCGTGAGGATGCCAACCAAGGTTCTGAAAATCACCACCAGGAAGTCCCCTTGTGGTGAAGGAACCAACACATGGGATAGATTTGAGTTGCGTGTCCACAAGAGGGTTATCGACCTGTTCAGCTCACCGGATGTTGTCAAGCAAATCACTTCCATTACTATTGAACCTGGTGTTGAGGTGGAGGTTACAATCGCCGACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

123

Amino Acids

13.71

Weight (kDa)

9.73

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	24 - 118	3.6e-29	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	237
AclWI	GGATC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	237, 268
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	3 cut(s)	31, 203, 331
AluBI	AGCT	1 cut(s)	288
AluI	AGCT	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	52
Ama87I	CYCGRG	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	4 cut(s)	169, 190, 233, 282
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	23
BciT130I	CCWGG	3 cut(s)	33, 205, 333
BcoDI	GTCTC	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	151
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	33, 205, 333
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	4 cut(s)	136, 165, 166, 229
BmrFI	CCNGG	3 cut(s)	33, 205, 333
BmsI	GCATC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	138, 183
BsaWI	WCCGGW	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 268
Bse21I	CCTNAGG	1 cut(s)	152
BseBI	CCWGG	3 cut(s)	33, 205, 333
BseDI	CCNNGG	2 cut(s)	138, 183
BseGI	GGATG	2 cut(s)	180, 301
BseLI	CCNNNNNNNGG	2 cut(s)	237, 268
BseMII	CTCAG	2 cut(s)	62, 166
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	293
BsiWI	CGTACG	1 cut(s)	6
BslFI	GGGAC	2 cut(s)	177, 196
BslI	CCNNNNNNNGG	2 cut(s)	237, 268
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	2 cut(s)	177, 196
BsoBI	CYCGRG	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	57, 66, 121
BspCNI	CTCAG	2 cut(s)	61, 165
BspLI	GGNNCC	4 cut(s)	136, 165, 166, 229
BspPI	GGATC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	138, 183
BssMI	GATC	3 cut(s)	57, 66, 121
BssT1I	CCWWGG	2 cut(s)	138, 183
Bst2UI	CCWGG	3 cut(s)	33, 205, 333
BstDEI	CTNAG	2 cut(s)	48, 152
BstF5I	GGATG	2 cut(s)	180, 301
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	3 cut(s)	60, 69, 124
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	3 cut(s)	57, 66, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	3 cut(s)	33, 205, 333
BstSCI	CCNGG	3 cut(s)	31, 203, 331
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
Bsu36I	CCTNAGG	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	180, 301
BtsIMutI	CAGTG	1 cut(s)	117
CfoI	GCGC	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	164
CsiI	ACCWGGT	2 cut(s)	31, 331
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	2 cut(s)	22, 288
CviKI_1	RGCY	2 cut(s)	22, 288
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	48, 152
DpnI	GATC	3 cut(s)	59, 68, 123
DpnII	GATC	3 cut(s)	57, 66, 121
Eco130I	CCWWGG	2 cut(s)	138, 183
Eco47I	GGWCC	1 cut(s)	164
Eco81I	CCTNAGG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	3 cut(s)	31, 203, 331
EcoT14I	CCWWGG	2 cut(s)	138, 183
ErhI	CCWWGG	2 cut(s)	138, 183
FaeI	CATG	1 cut(s)	240
FaiI	YATR	1 cut(s)	238
FaqI	GGGAC	2 cut(s)	177, 196
FatI	CATG	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	187, 308
Fsp4HI	GCNGC	1 cut(s)	12
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	151
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	240
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	44, 362
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	4 cut(s)	169, 190, 233, 282
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	5 cut(s)	38, 50, 70, 97, 106
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	154, 218
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	48, 152
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	240
HspAI	GCGC	1 cut(s)	148
KflI	GGGWCCC	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	57, 66, 121
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	165
MabI	ACCWGGT	2 cut(s)	31, 331
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	3 cut(s)	59, 68, 123
MboI	GATC	3 cut(s)	57, 66, 121
MboII	GAAGA	1 cut(s)	75
MflI	RGATCY	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	53, 356
MnlI	CCTC	7 cut(s)	34, 113, 161, 165, 261, 334, 340
MseI	TTAA	1 cut(s)	367
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	3 cut(s)	33, 205, 333
MvaI	CCWGG	3 cut(s)	33, 205, 333
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	57, 66, 121
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	4 cut(s)	136, 165, 166, 229
PaeR7I	CTCGAG	1 cut(s)	104
Pfl23II	CGTACG	1 cut(s)	6
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	52, 356
PpsI	GAGTC	2 cut(s)	52, 356
PpuMI	RGGWCCY	1 cut(s)	164
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	3 cut(s)	31, 203, 331
PspGI	CCWGG	3 cut(s)	31, 203, 331
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	4 cut(s)	136, 165, 166, 229
PspPI	GGNCC	1 cut(s)	164
PspPPI	RGGWCCY	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	367
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	57, 66, 121
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	2 cut(s)	53, 356
ScrFI	CCNGG	3 cut(s)	33, 205, 333
SetI	ASST	9 cut(s)	37, 96, 105, 189, 282, 290, 334, 345, 351
SexAI	ACCWGGT	2 cut(s)	31, 331
SfaNI	GCATC	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	38, 104
SmoI	CTYRAG	2 cut(s)	38, 104
StyD4I	CCNGG	3 cut(s)	31, 203, 331
StyI	CCWWGG	2 cut(s)	138, 183
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	105, 276
Tru1I	TTAA	1 cut(s)	367
Tru9I	TTAA	1 cut(s)	367
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.