Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

27991320 .. 27993114

Gene Structure 1795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G281000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTGACAACCCGACCCGACCCGTCCATAACTTTCACATTGTCACTTAGGTTGTTTTGCTTTTTTTGGGGTCAACAGGTTGTTAAAATAGATATTTTGCTTCATTTGGATAAATCCCTTGCCCTAAACCCTCACCTCACCCAGGAAAGCGAACGAGTAGCTTGGCTGAAGAAAATGGCTTATGCAGCGATGAAACCAAGCAAGGCAGGTCTGGAGGAGCAGGAGCAGATCCACAAGATCAGGATCACTCTCTCCTCCAAGAACGTCAAGAACCTCGAGAAAGTTTGCACTGATCTGGTTCGTGGTGCGAAGGACAAGAGGCTCCGGGTTAAGGGACCCGTGAGAATGCCAACCAAGGTTCTGCACATTACCACCAGGAAGTCTCCTTGTGGTGAAGGTACCAACACATGGGACAGATTTGAGTTACGTGTCCACAAGAGGGTGATTGACCTCTTCAGTTCTCCTGATGTCGTCAAGCAAATTACTTCCATTACAATTGAACCTGGTGTGGAAGTGGAGGTTACAATCGCAGACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

180

Amino Acids

20.36

Weight (kDa)

9.64

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	398
AccB7I	CCANNNNNTGG	1 cut(s)	408
AclWI	GGATC	2 cut(s)	223, 251
AcuI	CTGAAG	2 cut(s)	188, 439
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	4 cut(s)	142, 331, 408, 439
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	1 cut(s)	500
AjnI	CCWGG	3 cut(s)	141, 374, 502
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	2 cut(s)	223, 251
Ama87I	CYCGRG	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	185
Asp718I	GGTACC	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	5 cut(s)	16, 125, 130, 404, 454
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	197
BciT130I	CCWGG	3 cut(s)	143, 376, 504
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	4 cut(s)	143, 326, 376, 504
Bme18I	GGWCC	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	4 cut(s)	323, 336, 337, 400
BmrFI	CCNGG	4 cut(s)	143, 326, 376, 504
BpmI	CTGGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	141, 354
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 331, 408, 439
Bse8I	GATNNNNATC	1 cut(s)	242
BseBI	CCWGG	3 cut(s)	143, 376, 504
BseDI	CCNNGG	2 cut(s)	141, 354
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	4 cut(s)	142, 331, 408, 439
BseRI	GAGGAG	2 cut(s)	230, 244
BseXI	GCAGC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	347
BshNI	GGYRCC	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	325
BslFI	GGGAC	2 cut(s)	348, 425
BslI	CCNNNNNNNGG	4 cut(s)	142, 331, 408, 439
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	348, 425
BsmI	GAATGC	1 cut(s)	351
BsoBI	CYCGRG	1 cut(s)	275
Bsp143I	GATC	4 cut(s)	228, 237, 243, 292
BspLI	GGNNCC	4 cut(s)	323, 336, 337, 400
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	223, 251
BspT107I	GGYRCC	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	141, 354
BssMI	GATC	4 cut(s)	228, 237, 243, 292
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	3 cut(s)	143, 376, 504
Bst6I	CTCTTC	1 cut(s)	458
BstBAI	YACGTR	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstKTI	GATC	4 cut(s)	231, 240, 246, 295
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	4 cut(s)	228, 237, 243, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	3 cut(s)	143, 376, 504
BstSCI	CCNGG	4 cut(s)	141, 324, 374, 502
BstV1I	GCAGC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	288
BveI	ACCTGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	335
CsiI	ACCWGGT	1 cut(s)	502
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	1 cut(s)	408
CviJI	RGCY	4 cut(s)	161, 166, 179, 322
CviKI_1	RGCY	4 cut(s)	161, 166, 179, 322
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	4 cut(s)	230, 239, 245, 294
DpnII	GATC	4 cut(s)	228, 237, 243, 292
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Eco130I	CCWWGG	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	335
Eco57I	CTGAAG	2 cut(s)	188, 439
Eco88I	CYCGRG	1 cut(s)	275
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRII	CCWGG	3 cut(s)	141, 374, 502
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	411
FaiI	YATR	3 cut(s)	29, 183, 409
FaqI	GGGAC	2 cut(s)	348, 425
FatI	CATG	1 cut(s)	407
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	233
HapII	CCGG	1 cut(s)	325
Hin1II	CATG	1 cut(s)	411
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	533
HpaII	CCGG	1 cut(s)	325
HphI	GGTGA	5 cut(s)	16, 125, 130, 404, 454
Hpy166II	GTNNAC	2 cut(s)	74, 433
Hpy188III	TCNNGA	5 cut(s)	212, 241, 268, 277, 464
Hpy8I	GTNNAC	2 cut(s)	74, 433
HpyAV	CCTTC	2 cut(s)	304, 389
HpyCH4IV	ACGT	2 cut(s)	264, 427
HpyCH4V	TGCA	3 cut(s)	185, 288, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	264, 427
Hsp92II	CATG	1 cut(s)	411
KflI	GGGWCCC	1 cut(s)	335
KpnI	GGTACC	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	228, 237, 243, 292
LmnI	GCTCC	3 cut(s)	217, 223, 327
Lsp1109I	GCAGC	1 cut(s)	197
MabI	ACCWGGT	1 cut(s)	502
MaeII	ACGT	2 cut(s)	264, 427
MaeIII	GTNAC	4 cut(s)	4, 42, 423, 520
MalI	GATC	4 cut(s)	230, 239, 245, 294
MboI	GATC	4 cut(s)	228, 237, 243, 292
MboII	GAAGA	2 cut(s)	181, 445
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	228
MluCI	AATT	2 cut(s)	480, 495
MlyI	GAGTC	1 cut(s)	527
MnlI	CCTC	9 cut(s)	141, 146, 208, 265, 284, 312, 432, 461, 511
MseI	TTAA	3 cut(s)	84, 330, 538
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	4 cut(s)	143, 326, 376, 504
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	3 cut(s)	143, 376, 504
MwoI	GCNNNNNNNGC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	4 cut(s)	228, 237, 243, 292
NlaIII	CATG	1 cut(s)	411
NlaIV	GGNNCC	4 cut(s)	323, 336, 337, 400
NmuCI	GTSAC	2 cut(s)	4, 42
PaeR7I	CTCGAG	1 cut(s)	275
PctI	GAATGC	1 cut(s)	351
PflMI	CCANNNNNTGG	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
Ppu21I	YACGTR	1 cut(s)	428
PpuMI	RGGWCCY	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	3 cut(s)	141, 374, 502
PspGI	CCWGG	3 cut(s)	141, 374, 502
PspN4I	GGNNCC	4 cut(s)	323, 336, 337, 400
PspPI	GGNCC	1 cut(s)	335
PspPPI	RGGWCCY	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
SaqAI	TTAA	3 cut(s)	84, 330, 538
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	4 cut(s)	228, 237, 243, 292
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	4 cut(s)	143, 326, 376, 504
SexAI	ACCWGGT	1 cut(s)	502
Sfr274I	CTCGAG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	335
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	480, 495
StyD4I	CCNGG	4 cut(s)	141, 324, 374, 502
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	2 cut(s)	267, 430
TaqI	TCGA	1 cut(s)	276
TasI	AATT	2 cut(s)	480, 495
Tru1I	TTAA	3 cut(s)	84, 330, 538
Tru9I	TTAA	3 cut(s)	84, 330, 538
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	4, 42
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	2 cut(s)	4, 42
TspDTI	ATGAA	2 cut(s)	92, 206
TspRI	CASTG	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	335
XagI	CCTNNNNNAGG	1 cut(s)	140
XhoI	CTCGAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.