Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

49782484 .. 49786546

Gene Structure 4063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0386300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCGGACGCCGTGATCAATGGCCTCGCCGGCGCCGGCGGAGGGATCATCGCCCAGCTAATCACATATCCACTCCAGACTGTGAACACTCGTCAGCAAACGGAACGTGATCTGAAAAAGGAGAAGAGGAAGCTCGGAACCGTTGAACAAATAGGCCAGGTTATAAAGAATGAAGGATGGGAACGGTTGTACGGAGGTTTGACGCCGTCGTTGGTGGGAACAGCAGCATCTCAGGGTGTTTACTATTATTTCTATCAAATATTCAGGAACAAGGCTGAAGTTGCTGCCCTTGAACGTAGTAAGTTGGGCATTGGTGATGGATCTGTTGGAATGCTCTCTTCACTAGTGGTGGCTGCATTATCTGGGTGTGTGAATGTACTATTGACAAATCCTATATGGGTAGTTGTTACACGCATGCAGACTCATAGAAAAACTTCAAAGTCTCAGCCTGATCAGATGCTATCAACTGATCCAGAGGAAGCAATTGTTGCTGCAGCTGAGCCTCCTCCCTTCGGGACTAGTCATGCGGTACAAGAAGTTTATGATGAAGGTGGATTTTTCAGTTTCTGGAGAGGTGTATTTCCAACATTGATCATGGTGAGTAATCCTTCCATGCAGTTTATGCTGTATGAAACTATGTTGAATAAGCTGAAGAAAAGACGTGCCTTGAGTAAGAAGAATAACAATGGTATTACTGCTGTAGAGATATTCCTGCTTGGTGCTTTGGCAAAACTAGGTGCTACTGTCGTGACATATCCTCTTTTAGTCGTGAAGGCGAGACTTCAAGCGAAACAGGTCACAACTGGTGACAAAAGGCATCATTATAAAGGAACTCTGGATGCCATTTTAAAGATGATTCGCTATGAAGGGTTCTATGGTTTCTACAAAGGGATGAGCACAAAAATAGTACAAAGTGTACTCGCTGCTGCTGTTTTGTTCATGGTCAAGGAAGAACTCGTCAAGGGTGTTCGGTTCATGCTCGCTAACAAAGCGAAATCAAAGCCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

336

Amino Acids

36.92

Weight (kDa)

9.78

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 90	2e-17	Mitochondrial carrier protein
Mito_carr	PF00153	110 - 219	7.4e-18	Mitochondrial carrier protein
Mito_carr	PF00153	232 - 321	1.8e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	164, 825
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	2 cut(s)	39, 527
AclWI	GGATC	3 cut(s)	53, 328, 464
AcuI	CTGAAG	2 cut(s)	297, 671
AcyI	GRCGYC	3 cut(s)	9, 33, 203
AfaI	GTAC	5 cut(s)	191, 378, 531, 909, 918
AfiI	CCNNNNNNNGG	2 cut(s)	42, 512
AgsI	TTSAA	5 cut(s)	146, 293, 438, 643, 785
AhlI	ACTAGT	2 cut(s)	343, 518
AjiI	CACGTC	1 cut(s)	662
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	4 cut(s)	58, 133, 497, 649
AluI	AGCT	4 cut(s)	58, 133, 497, 649
Alw21I	GWGCWC	1 cut(s)	899
Alw26I	GTCTC	2 cut(s)	447, 772
AlwI	GGATC	3 cut(s)	53, 328, 464
AlwNI	CAGNNNCTG	1 cut(s)	567
AoxI	GGCC	2 cut(s)	22, 154
ApeKI	GCWGC	7 cut(s)	224, 284, 353, 491, 494, 923, 926
Asp700I	GAANNNNTTC	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	3 cut(s)	326, 610, 818
BanI	GGYRCC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	899
BbvI	GCAGC	7 cut(s)	236, 271, 340, 478, 506, 910, 913
BccI	CCATC	2 cut(s)	171, 311
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	158
BclI	TGATCA	3 cut(s)	15, 451, 591
BcoDI	GTCTC	2 cut(s)	447, 772
BcuI	ACTAGT	2 cut(s)	343, 518
BfaI	CTAG	3 cut(s)	344, 519, 734
BfmI	CTRYAG	2 cut(s)	492, 699
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	30
BisI	GCNGC	7 cut(s)	225, 285, 354, 492, 495, 924, 927
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	7 cut(s)	226, 286, 355, 493, 496, 925, 928
Bme1390I	CCNGG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	662
BmiI	GGNNCC	2 cut(s)	34, 139
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	4 cut(s)	236, 447, 826, 829
BpmI	CTGGAG	2 cut(s)	59, 589
Bpu1102I	GCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	688
BsaHI	GRCGYC	3 cut(s)	9, 33, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 512
Bse118I	RCCGGY	2 cut(s)	29, 35
Bse1I	ACTGG	1 cut(s)	808
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	3 cut(s)	182, 844, 897
BseLI	CCNNNNNNNGG	2 cut(s)	42, 512
BseMII	CTCAG	3 cut(s)	245, 458, 489
BseNI	ACTGG	1 cut(s)	808
BseRI	GAGGAG	1 cut(s)	495
BseXI	GCAGC	7 cut(s)	236, 271, 340, 478, 506, 910, 913
BseYI	CCCAGC	1 cut(s)	54
BshFI	GGCC	2 cut(s)	24, 156
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	899
BsiSI	CCGG	2 cut(s)	30, 36
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	2 cut(s)	42, 512
BsmAI	GTCTC	2 cut(s)	447, 772
BsmFI	GGGAC	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	24, 156
Bsp1286I	GDGCHC	1 cut(s)	899
Bsp143I	GATC	7 cut(s)	15, 45, 109, 320, 451, 469, 591
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	2 cut(s)	39, 527
BspANI	GGCC	2 cut(s)	24, 156
BspCNI	CTCAG	3 cut(s)	244, 457, 490
BspLI	GGNNCC	2 cut(s)	34, 139
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	3 cut(s)	53, 328, 464
BspT107I	GGYRCC	1 cut(s)	32
BsrFI	RCCGGY	2 cut(s)	29, 35
BsrI	ACTGG	1 cut(s)	808
BssAI	RCCGGY	2 cut(s)	29, 35
BssMI	GATC	7 cut(s)	15, 45, 109, 320, 451, 469, 591
BssNI	GRCGYC	3 cut(s)	9, 33, 203
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	4 cut(s)	82, 142, 186, 745
Bst6I	CTCTTC	2 cut(s)	119, 343
BstACI	GRCGYC	3 cut(s)	9, 33, 203
BstAPI	GCANNNNNTGC	2 cut(s)	488, 622
BstC8I	GCNNGC	4 cut(s)	31, 37, 416, 981
BstDEI	CTNAG	3 cut(s)	231, 444, 498
BstF5I	GGATG	3 cut(s)	182, 844, 897
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	7 cut(s)	18, 48, 112, 323, 454, 472, 594
BstMAI	GTCTC	2 cut(s)	447, 772
BstMBI	GATC	7 cut(s)	15, 45, 109, 320, 451, 469, 591
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 281, 488, 622, 989
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	2 cut(s)	492, 699
BstV1I	GCAGC	7 cut(s)	236, 271, 340, 478, 506, 910, 913
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	24, 156
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	662
BtsCI	GGATG	3 cut(s)	182, 844, 897
Cac8I	GCNNGC	4 cut(s)	31, 37, 416, 981
CaiI	CAGNNNCTG	1 cut(s)	567
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	2 cut(s)	29, 35
CseI	GACGC	2 cut(s)	17, 211
Csp6I	GTAC	5 cut(s)	190, 377, 530, 908, 917
CviAII	CATG	6 cut(s)	415, 524, 595, 613, 940, 976
CviQI	GTAC	5 cut(s)	190, 377, 530, 908, 917
DdeI	CTNAG	3 cut(s)	231, 444, 498
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	7 cut(s)	17, 47, 111, 322, 453, 471, 593
DpnII	GATC	7 cut(s)	15, 45, 109, 320, 451, 469, 591
DraI	TTTAAA	1 cut(s)	849
Eam1104I	CTCTTC	2 cut(s)	119, 343
EarI	CTCTTC	2 cut(s)	119, 343
EciI	GGCGGA	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	297, 671
EcoRII	CCWGG	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaeI	CATG	6 cut(s)	418, 527, 598, 616, 943, 979
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	6 cut(s)	414, 523, 594, 612, 939, 975
FbaI	TGATCA	3 cut(s)	15, 451, 591
Fnu4HI	GCNGC	7 cut(s)	225, 285, 354, 492, 495, 924, 927
FokI	GGATG	3 cut(s)	189, 851, 904
Fsp4HI	GCNGC	7 cut(s)	225, 285, 354, 492, 495, 924, 927
FspBI	CTAG	3 cut(s)	344, 519, 734
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	7 cut(s)	225, 285, 354, 492, 495, 924, 927
GsaI	CCCAGC	1 cut(s)	58
GsuI	CTGGAG	2 cut(s)	59, 589
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	24, 156
HapII	CCGG	2 cut(s)	30, 36
HgaI	GACGC	2 cut(s)	17, 211
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	3 cut(s)	9, 33, 203
Hin1II	CATG	6 cut(s)	418, 527, 598, 616, 943, 979
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	421, 856
HpaII	CCGG	2 cut(s)	30, 36
HphI	GGTGA	3 cut(s)	326, 610, 818
Hpy166II	GTNNAC	3 cut(s)	85, 241, 917
Hpy188I	TCNGA	4 cut(s)	7, 114, 137, 456
Hpy188III	TCNNGA	8 cut(s)	76, 265, 473, 514, 568, 748, 769, 836
Hpy8I	GTNNAC	3 cut(s)	85, 241, 917
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	6 cut(s)	167, 520, 542, 618, 766, 860
HpyCH4III	ACNGT	4 cut(s)	82, 142, 186, 745
HpyCH4IV	ACGT	3 cut(s)	106, 295, 661
HpyCH4V	TGCA	4 cut(s)	356, 418, 494, 616
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 281, 488, 622, 989
HpyF3I	CTNAG	3 cut(s)	231, 444, 498
HpySE526I	ACGT	3 cut(s)	106, 295, 661
Hsp92I	GRCGYC	3 cut(s)	9, 33, 203
Hsp92II	CATG	6 cut(s)	418, 527, 598, 616, 943, 979
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
KroI	GCCGGC	2 cut(s)	29, 35
KroNI	GCCGGC	2 cut(s)	31, 37
Ksp22I	TGATCA	3 cut(s)	15, 451, 591
Kzo9I	GATC	7 cut(s)	15, 45, 109, 320, 451, 469, 591
Lsp1109I	GCAGC	7 cut(s)	236, 271, 340, 478, 506, 910, 913
LweI	GCATC	4 cut(s)	236, 447, 826, 829
MaeI	CTAG	3 cut(s)	344, 519, 734
MaeII	ACGT	3 cut(s)	106, 295, 661
MaeIII	GTNAC	4 cut(s)	406, 748, 796, 806
MalI	GATC	7 cut(s)	17, 47, 111, 322, 453, 471, 593
MboI	GATC	7 cut(s)	15, 45, 109, 320, 451, 469, 591
MboII	GAAGA	5 cut(s)	136, 330, 664, 688, 962
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	899
MluCI	AATT	1 cut(s)	483
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	2 cut(s)	307, 608
MnlI	CCTC	9 cut(s)	35, 35, 120, 188, 469, 513, 516, 566, 768
MreI	CGCCGGCG	2 cut(s)	29, 35
MroNI	GCCGGC	2 cut(s)	29, 35
MroXI	GAANNNNTTC	1 cut(s)	433
MseI	TTAA	1 cut(s)	848
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	2 cut(s)	30, 36
MspR9I	CCNGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	5 cut(s)	30, 281, 488, 622, 989
NaeI	GCCGGC	2 cut(s)	31, 37
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	7 cut(s)	15, 45, 109, 320, 451, 469, 591
NgoMIV	GCCGGC	2 cut(s)	29, 35
NlaIII	CATG	6 cut(s)	418, 527, 598, 616, 943, 979
NlaIV	GGNNCC	2 cut(s)	34, 139
NmuCI	GTSAC	3 cut(s)	748, 796, 806
NspI	RCATGY	1 cut(s)	418
PaeI	GCATGC	1 cut(s)	418
PctI	GAATGC	1 cut(s)	336
PdiI	GCCGGC	2 cut(s)	31, 37
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	856
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	7 cut(s)	226, 286, 355, 493, 496, 925, 928
PleI	GAGTC	1 cut(s)	415
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	415
PsiI	TTATAA	2 cut(s)	164, 825
Psp6I	CCWGG	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	34, 139
PstI	CTGCAG	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	567
PsuI	RGATCY	1 cut(s)	320
PsyI	GACNNNGTC	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	5 cut(s)	191, 378, 531, 909, 918
RsaNI	GTAC	5 cut(s)	190, 377, 530, 908, 917
SaqAI	TTAA	1 cut(s)	848
SatI	GCNGC	7 cut(s)	225, 285, 354, 492, 495, 924, 927
Sau3AI	GATC	7 cut(s)	15, 45, 109, 320, 451, 469, 591
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	899
SfaNI	GCATC	4 cut(s)	236, 447, 826, 829
SfcI	CTRYAG	2 cut(s)	492, 699
SfoI	GGCGCC	1 cut(s)	34
SgrAI	CRCCGGYG	2 cut(s)	29, 35
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
SpeI	ACTAGT	2 cut(s)	343, 518
SphI	GCATGC	1 cut(s)	418
Sse9I	AATT	1 cut(s)	483
SsiI	CCGC	2 cut(s)	39, 527
SspDI	GGCGCC	1 cut(s)	32
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	3 cut(s)	344, 519, 734
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	4 cut(s)	82, 142, 186, 745
TaiI	ACGT	3 cut(s)	109, 298, 664
TasI	AATT	1 cut(s)	483
TatI	WGTACW	3 cut(s)	376, 907, 916
TfiI	GAWTC	1 cut(s)	856
Tru1I	TTAA	1 cut(s)	848
Tru9I	TTAA	1 cut(s)	848
TseFI	GTSAC	3 cut(s)	748, 796, 806
TseI	GCWGC	7 cut(s)	224, 284, 353, 491, 494, 923, 926
Tsp45I	GTSAC	3 cut(s)	748, 796, 806
TspDTI	ATGAA	6 cut(s)	186, 561, 645, 879, 928, 964
TspGWI	ACGGA	2 cut(s)	116, 207
Tth111I	GACNNNGTC	1 cut(s)	205
XceI	RCATGY	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	3 cut(s)	344, 519, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.