Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Forward (+)

52835879 .. 52837007

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG371000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTACGGCGGCATACCAAGTTCCCACCAAGTCTGCAAAGCTTGGTTTGGAGGAGCAAAACCAAGAGCCGATTCGTAAGATTAGGATCACACTCTCCTCCAAGAAAGTGAAGAACGTTGAGAAAGTATGCAGTGATCTCATAAAGAGAGCCAAGCAACATCCTGATTCCATCAGGACTAAGGGTCCAGTGCGGATGCCCACTAAGACTCTTCGCATCACTACTAGGAAGTCCCCTTGTGGAGAAGGAACCAACACCTGGGATAGGTTCGAGATGCGTATTCACAAAAGAGTGATCGACCTCTTCACCACTCCAGGGACGGTCAGGAAAATTACTGAAATTGACATGGAACCAGGCGTGGAGGTTGAAGTTACTATTGGTGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

129

Amino Acids

14.61

Weight (kDa)

9.84

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	29 - 125	2.1e-26	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	258
AciI	CCGC	2 cut(s)	11, 193
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	1 cut(s)	95
AfiI	CCNNNNNNNGG	3 cut(s)	258, 264, 315
AgsI	TTSAA	1 cut(s)	368
AhdI	GACNNNNNGTC	1 cut(s)	183
AjnI	CCWGG	3 cut(s)	257, 313, 352
AjuI	GAANNNNNNNTTGG	3 cut(s)	57, 89, 360
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
AlwI	GGATC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	185
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	3 cut(s)	259, 315, 354
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	259, 315, 354
Bme18I	GGWCC	1 cut(s)	185
BmeRI	GACNNNNNGTC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	186, 250, 351
BmrFI	CCNGG	3 cut(s)	259, 315, 354
BmsI	GCATC	3 cut(s)	186, 225, 264
BpmI	CTGGAG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	258, 314
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 264, 315
Bse1I	ACTGG	1 cut(s)	188
Bse8I	GATNNNNATC	1 cut(s)	86
BseBI	CCWGG	3 cut(s)	259, 315, 354
BseDI	CCNNGG	2 cut(s)	258, 314
BseGI	GGATG	2 cut(s)	160, 201
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	3 cut(s)	258, 264, 315
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	2 cut(s)	68, 88
BslFI	GGGAC	2 cut(s)	217, 331
BslI	CCNNNNNNNGG	3 cut(s)	258, 264, 315
BsmFI	GGGAC	2 cut(s)	217, 331
Bsp143I	GATC	3 cut(s)	87, 136, 294
BspACI	CCGC	2 cut(s)	11, 193
BspLI	GGNNCC	3 cut(s)	186, 250, 351
BspPI	GGATC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	258, 314
BssMI	GATC	3 cut(s)	87, 136, 294
Bst2UI	CCWGG	3 cut(s)	259, 315, 354
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	2 cut(s)	216, 308
BstDEI	CTNAG	2 cut(s)	180, 204
BstENI	CCTNNNNNAGG	1 cut(s)	262
BstF5I	GGATG	2 cut(s)	160, 201
BstKTI	GATC	3 cut(s)	90, 139, 297
BstMBI	GATC	3 cut(s)	87, 136, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	3 cut(s)	259, 315, 354
BstSCI	CCNGG	3 cut(s)	257, 313, 352
BtsCI	GGATG	2 cut(s)	160, 201
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	139, 195
Cfr13I	GGNCC	1 cut(s)	185
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	4 cut(s)	5, 43, 70, 152
CviKI_1	RGCY	4 cut(s)	5, 43, 70, 152
DdeI	CTNAG	2 cut(s)	180, 204
DpnI	GATC	3 cut(s)	89, 138, 296
DpnII	GATC	3 cut(s)	87, 136, 294
DriI	GACNNNNNGTC	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	216, 308
Eam1105I	GACNNNNNGTC	1 cut(s)	183
EarI	CTCTTC	2 cut(s)	216, 308
Eco47I	GGWCC	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	262
EcoRII	CCWGG	3 cut(s)	257, 313, 352
FaeI	CATG	1 cut(s)	349
FaiI	YATR	4 cut(s)	16, 130, 143, 347
FaqI	GGGAC	2 cut(s)	217, 331
FatI	CATG	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	147, 208
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	297
Hin1II	CATG	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	3 cut(s)	73, 167, 208
HphI	GGTGA	1 cut(s)	298
Hpy188III	TCNNGA	4 cut(s)	164, 175, 271, 325
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	38, 132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	180, 204
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	87, 136, 294
LmnI	GCTCC	1 cut(s)	55
LweI	GCATC	3 cut(s)	186, 225, 264
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	370, 380
MalI	GATC	3 cut(s)	89, 138, 296
MboI	GATC	3 cut(s)	87, 136, 294
MboII	GAAGA	3 cut(s)	124, 203, 295
MluCI	AATT	2 cut(s)	330, 339
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	4 cut(s)	46, 109, 311, 355
MspR9I	CCNGG	3 cut(s)	259, 315, 354
MvaI	CCWGG	3 cut(s)	259, 315, 354
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	87, 136, 294
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	3 cut(s)	186, 250, 351
NmuCI	GTSAC	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	73, 167
PflMI	CCANNNNNTGG	1 cut(s)	258
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	3 cut(s)	257, 313, 352
PspGI	CCWGG	3 cut(s)	257, 313, 352
PspN4I	GGNNCC	3 cut(s)	186, 250, 351
PspPI	GGNCC	1 cut(s)	185
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	87, 136, 294
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	259, 315, 354
SetI	ASST	6 cut(s)	45, 120, 260, 269, 303, 366
SfaNI	GCATC	3 cut(s)	186, 225, 264
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	2 cut(s)	330, 339
SsiI	CCGC	2 cut(s)	11, 193
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	3 cut(s)	257, 313, 352
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	270, 297
TasI	AATT	2 cut(s)	330, 339
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	73, 167
TscAI	CASTG	2 cut(s)	139, 195
TseFI	GTSAC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	380
TspRI	CASTG	2 cut(s)	139, 195
Van91I	CCANNNNNTGG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	185
XagI	CCTNNNNNAGG	1 cut(s)	262
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.