RchiOBHm_Chr1g0350101

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000823
Physical Location & Seq
Forward (+)
43205789 .. 43206187
399 bp
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UTR
Exon/CDS
Intron
PRQ57599

Sequence Viewer

Length: 192 bp
ATGGAGGCAACCCCAAAGAAGTCGTGGCTGAGCCATAGCCTCCGCCGATATAACGGCGGATTCTACTCTTCAGCCAAAGGTAAAGCCGCCACCAGACCCGTCTTCTTTGGCGCGTGGAAGCTCAGACTCGTGGCCTCTGTTTTCCTCCTTTGCGTCGTCGTTTTGTTTCCTCCGGGCTCAGCTTTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.94

Weight (kDa)

10.7

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 113
AciI CCGC 3 cut(s) 43, 57, 87
AcuI CTGAAG 1 cut(s) 54
AluBI AGCT 2 cut(s) 121, 182
AluI AGCT 2 cut(s) 121, 182
AoxI GGCC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 174
BanII GRGCYC 1 cut(s) 179
BauI CACGAG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 70
BcnI CCSGG 1 cut(s) 174
BisI GCNGC 1 cut(s) 87
BlpI GCTNAGC 2 cut(s) 29, 178
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 94
Bpu1102I GCTNAGC 2 cut(s) 29, 178
BpuMI CCSGG 1 cut(s) 174
BseMII CTCAG 3 cut(s) 20, 136, 192
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 173
BsnI GGCC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 179
Bsp1720I GCTNAGC 2 cut(s) 29, 178
BspACI CCGC 3 cut(s) 43, 57, 87
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 3 cut(s) 21, 135, 191
BspFNI CGCG 1 cut(s) 113
BspHI TCATGA 1 cut(s) 188
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 73
BstDEI CTNAG 3 cut(s) 29, 122, 178
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 172
BstUI CGCG 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 94
BsuRI GGCC 1 cut(s) 134
CciI TCATGA 1 cut(s) 188
CfoI GCGC 1 cut(s) 113
CseI GACGC 1 cut(s) 142
CviAII CATG 1 cut(s) 189
CviJI RGCY 9 cut(s) 28, 33, 39, 74, 86, 121, 134, 177, 182
CviKI_1 RGCY 9 cut(s) 28, 33, 39, 74, 86, 121, 134, 177, 182
DdeI CTNAG 3 cut(s) 29, 122, 178
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
EciI GGCGGA 2 cut(s) 32, 72
Eco24I GRGCYC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 179
FaeI CATG 1 cut(s) 192
FaiI YATR 3 cut(s) 36, 51, 190
FatI CATG 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 87
GlaI GCGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 142
HhaI GCGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 192
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 2 cut(s) 60, 126
HpaII CCGG 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 1 cut(s) 189
Hpy99I CGWCG 2 cut(s) 158, 161
HpyF3I CTNAG 3 cut(s) 29, 122, 178
Hsp92II CATG 1 cut(s) 192
HspAI GCGC 1 cut(s) 111
LpnPI CCDG 2 cut(s) 106, 186
MboII GAAGA 2 cut(s) 60, 94
MhlI GDGCHC 1 cut(s) 179
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 4 cut(s) 50, 145, 155, 180
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 113
NciI CCSGG 1 cut(s) 174
NlaIII CATG 1 cut(s) 192
PagI TCATGA 1 cut(s) 188
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
SatI GCNGC 1 cut(s) 87
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 1 cut(s) 179
SetI ASST 3 cut(s) 82, 123, 184
SgeI CNNG 9 cut(s) 36, 105, 110, 124, 126, 140, 142, 185, 186
SsiI CCGC 3 cut(s) 43, 57, 87
StyD4I CCNGG 1 cut(s) 172
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 60
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.