Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

49151405 .. 49153249

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG361500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTTACGCAGCGATGAAACCCACCAAGCCTGGTCTCGAGGAGACACAGGAGCAGATCCACAAGATCAGAATCACTCTCTCTTCCAAGAACGTCAAGAACCTCGAGAAAGTTTGTGCTGATTTGGTTCGCGGTGCCAAGGACAAGAGGCTTAGGGTGAAGGGACCAGTGAGGATGCCTACCAAGGTTCTGCACATTACCACCAGGAAGTCTCCCTGTGGAGAAGGTACTAACACATGGGACAGATTTGAGTTGCGTGTGCACAAGCGTGTTATTGATCTCTTCAGCTCTCCTGATGTTGTGAAGCAGATCACCTCCATCACGATTGAACCCGGTGTTGAAGTGGAGGTCACAATTGCCGACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

122

Amino Acids

13.75

Weight (kDa)

9.65

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	24 - 118	1.1e-28	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccII	CGCG	1 cut(s)	132
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	268
AfaI	GTAC	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	329, 341
AjnI	CCWGG	2 cut(s)	31, 203
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	288
AluI	AGCT	1 cut(s)	288
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	3 cut(s)	38, 41, 216
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	52
Ama87I	CYCGRG	2 cut(s)	38, 104
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	169, 304
AvaI	CYCGRG	2 cut(s)	38, 104
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	33, 205
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	3 cut(s)	38, 41, 216
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	33, 205, 333
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	2 cut(s)	38, 104
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	136, 165
BmrFI	CCNGG	3 cut(s)	33, 205, 333
BmsI	GCATC	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	138, 183
Bse1I	ACTGG	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	33, 205
BseDI	CCNNGG	2 cut(s)	138, 183
BseGI	GGATG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	2 cut(s)	38, 104
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	2 cut(s)	177, 254
BsmAI	GTCTC	3 cut(s)	38, 41, 216
BsmFI	GGGAC	2 cut(s)	177, 254
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	38, 104
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	57, 66, 277, 309
BspACI	CCGC	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	136, 165
BspPI	GGATC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	138, 183
BssMI	GATC	4 cut(s)	57, 66, 277, 309
BssT1I	CCWWGG	2 cut(s)	138, 183
Bst2UI	CCWGG	2 cut(s)	33, 205
Bst6I	CTCTTC	2 cut(s)	88, 287
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	4 cut(s)	60, 69, 280, 312
BstMAI	GTCTC	3 cut(s)	38, 41, 216
BstMBI	GATC	4 cut(s)	57, 66, 277, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	33, 205
BstSCI	CCNGG	3 cut(s)	31, 203, 331
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	4 cut(s)	5, 31, 151, 288
CviKI_1	RGCY	4 cut(s)	5, 31, 151, 288
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	4 cut(s)	59, 68, 279, 311
DpnII	GATC	4 cut(s)	57, 66, 277, 309
Eam1104I	CTCTTC	2 cut(s)	88, 287
EarI	CTCTTC	2 cut(s)	88, 287
Eco130I	CCWWGG	2 cut(s)	138, 183
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	268
Eco88I	CYCGRG	2 cut(s)	38, 104
EcoRII	CCWGG	2 cut(s)	31, 203
EcoT14I	CCWWGG	2 cut(s)	138, 183
ErhI	CCWWGG	2 cut(s)	138, 183
FaeI	CATG	1 cut(s)	240
FaiI	YATR	1 cut(s)	238
FaqI	GGGAC	2 cut(s)	177, 254
FatI	CATG	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
HapII	CCGG	1 cut(s)	333
Hin1II	CATG	1 cut(s)	240
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	2 cut(s)	169, 304
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	5 cut(s)	38, 97, 106, 293, 322
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	154, 218
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	193, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	57, 66, 277, 309
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	9 cut(s)	18, 35, 45, 180, 190, 217, 229, 306, 346
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	165
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	4 cut(s)	59, 68, 279, 311
MboI	GATC	4 cut(s)	57, 66, 277, 309
MboII	GAAGA	2 cut(s)	75, 274
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	1 cut(s)	354
MnlI	CCTC	6 cut(s)	34, 113, 141, 165, 325, 340
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	3 cut(s)	33, 205, 333
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	2 cut(s)	33, 205
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	4 cut(s)	57, 66, 277, 309
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	2 cut(s)	136, 165
NmuCI	GTSAC	1 cut(s)	349
OliI	CACNNNNGTG	1 cut(s)	267
PaeR7I	CTCGAG	2 cut(s)	38, 104
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	31, 203
PspGI	CCWGG	2 cut(s)	31, 203
PspN4I	GGNNCC	2 cut(s)	136, 165
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	267
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	57, 66, 277, 309
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	33, 205, 333
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	7 cut(s)	96, 105, 189, 229, 290, 317, 351
SfaNI	GCATC	1 cut(s)	165
Sfr274I	CTCGAG	2 cut(s)	38, 104
SinI	GGWCC	1 cut(s)	164
SlaI	CTCGAG	2 cut(s)	38, 104
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	38, 104
SmoI	CTYRAG	2 cut(s)	38, 104
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	31, 203, 331
StyI	CCWWGG	2 cut(s)	138, 183
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	39, 105
TasI	AATT	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	72
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	174
VneI	GTGCAC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	164
XhoI	CTCGAG	2 cut(s)	38, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.