Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

38083533 .. 38100185

Gene Structure 16653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0329200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1992 bp

ATGAAGGCCGTCGTCTTGCTCTGCTGCTGCTGCTTTCTGTTCCAATGTTTCGCTGTTACAAACCAGACAGCAGAGCTGCTTGTTGATGCTTCTCAATCATCCGGACGACTAATATCTCCAACACTCTTTGGAATTTTCTTCGAGGAGATTAACCATGCTGGCGCTGGTGGGTTGTGGGCTGAGCTTGTAAGCAACAGAGGTTTTGAATCTGGGGGACCTAACACTCCTTCCAACATTGATCCCTGGTCAATTATTGGGAATGAGTCATCTTTGCTTGTATCGACGGACCGGTCGTCATGTTTCGAGCGCAATAAAGTTGCACTTCGAATGGAGGTTCTATGTGACAGCCAAGATGCCAATATCTGTCCTTCTGGGGGTGTTGGAATTTATAACCCTGGGTTCTGGGGCATGAATGTCGAAAAAGGGAAGACCTACATTGTAACTCTTTATGTTCGTTCATCTGGAGGAATCAATGTATCTGTATCGTTGACGAGTTCCAATGGACTGCAGACTCTTGCTGCTGATAACATTATAGCTTCTGTTTCAGAAGTTTCAAACTGGACGAAATTTAAAGTTCTGTTGGAAGCCAAAGCAACAAATCCTAGTTCAAGATTGCAATTGACAACCACCAGAAAAGGGTTGATATGGTTTGATCAAGTGTCAGTCATGCCTTCGGACACATACAAGGGACATGGATTTAGGAAGGACCTTGTCGACATGTTGGCAGATCTAAAACCCCAATTTATTAGATTTCCAGGTGGCTGTTTTGTTGAAGGTGAATGGTTAAGAAATGCATTTCGTTGGAAAGAAACAATTGGACCATGGGAAGAGAGACCTGGACACTTTGGTGATGTTTGGATGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTTTTGCAACTAGCAGAGGACCTTGGTACACGGCCAATTTGGGTGTTCAACAATGGAATCAGCCACAATGATCAAGTTGATACTTCCAATGTCTTACCGTTTGTACAGGAAGCTCTTGATGGTATTGAGTTTGCTAGGGGCGATCCTGATTCTACATGGGGTTCTCTCCGTGCCGCAATGGGACACCCAGAGCCCTTTGACTTGAGATATGTTGCTGTTGGGAATGAGGATTGTGGCAAAAAGAATTACCGAGGAAATTACCTTAAGTTCTACAGTGCTATAAAGCGTGCCTATCCAGACATCCAAATAATTTCTAACTGCGATGGCTCTTCTCAACCTTTGGATCATCCAGCTGATTTGTATGACTTTCATGTTTATACTTCAGCAAGCAACATGTTTTCGATGGCTCATCGGTTTGATCGTGCACCACGTAAGGGTCCCAAGGCTTTTGTGAGTGAGTATGCTGTGACCGGAAAAGATGCTGGAGCAGGAAGTCTTCTTGCAGCATTGGCAGAAGCCGGATTTCTGATTGGGCTTGAAAAAAACAGTGATGTTGTTGAGATGGCAAGTTATGCGCCACTCTTTGTGAATGCCAATAACAAGCGGTGGAACCCAGATGCAATCGTGTTTAACTCCTCACAGCTGTATGGAACTCCTAGCTACTGGGTGCAATGTCTTTTTAGTGAATCAAGTGGAGCAACTATTTTCAATGCAACACTCCAAACAAATTCTTCTACTTCACTTCTTGCATCTGCAATTTCGTGGAAAAGTTCTGAAGATCAGAATACTTACCTAAGAATTAAGATTGTGAACTTTGGAAGCAACATAGTGAATCTTACGATCCGTGTTGATGGGTTGGGGCCAAATTTTGTTGGTCTGTCTGGATCAACCAAGACTGTGCTCACATCTAAAAATGTGATGGATGAGAACTCGTTTGGTGAGCCAAAGAAGGTCATACCGAACCTGAGTCTACTTGAACAGGCTGGTGAGGAAATGGATGTTGGACTTTCTGCACATTCCTTCACTTCAATTGATTTGTTAATGGAACCAAGCTATATCAGGACTGGAGCTGATTCTTTCTCCCTGTCTTCTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

663

Amino Acids

72.72

Weight (kDa)

5.06

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASD1_dom	PF22848	241 - 442	3.4e-59	Alpha-L-arabinofuranosidase 1 domain
Alpha-L-AF_C	PF06964	462 - 638	6.4e-23	Alpha-L-arabinofuranosidase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AasI	GACNNNNNNGTC	1 cut(s)	289
AccI	GTMKAC	2 cut(s)	714, 1864
AccIII	TCCGGA	1 cut(s)	101
AciI	CCGC	2 cut(s)	1068, 1498
AclWI	GGATC	5 cut(s)	233, 1031, 1245, 1729, 1786
AcoI	YGGCCR	1 cut(s)	926
AcsI	RAATTY	5 cut(s)	132, 384, 566, 1621, 1759
AcuI	CTGAAG	2 cut(s)	1260, 1689
AfaI	GTAC	3 cut(s)	863, 922, 999
AfiI	CCNNNNNNNGG	3 cut(s)	374, 636, 1328
AflII	CTTAAG	1 cut(s)	1157
AflIII	ACRYGT	2 cut(s)	717, 1287
AgeI	ACCGGT	1 cut(s)	288
AgsI	TTSAA	9 cut(s)	206, 555, 609, 773, 943, 1433, 1603, 1871, 1923
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	4 cut(s)	242, 394, 754, 835
AjuI	GAANNNNNNNTTGG	2 cut(s)	1878, 1910
AleI	CACNNNNGTG	1 cut(s)	846
AluBI	AGCT	9 cut(s)	76, 184, 536, 1007, 1247, 1537, 1554, 1947, 1964
AluI	AGCT	9 cut(s)	76, 184, 536, 1007, 1247, 1537, 1554, 1947, 1964
Alw21I	GWGCWC	2 cut(s)	1321, 1797
Alw26I	GTCTC	1 cut(s)	826
Alw44I	GTGCAC	1 cut(s)	1317
AlwI	GGATC	5 cut(s)	233, 1031, 1245, 1729, 1786
Aor13HI	TCCGGA	1 cut(s)	101
AoxI	GGCC	3 cut(s)	6, 926, 1754
ApaLI	GTGCAC	1 cut(s)	1317
ApeKI	GCWGC	6 cut(s)	24, 27, 30, 76, 518, 1397
ApoI	RAATTY	5 cut(s)	132, 384, 566, 1621, 1759
AsiGI	ACCGGT	1 cut(s)	288
AspLEI	GCGC	3 cut(s)	164, 309, 1471
AspS9I	GGNCC	7 cut(s)	215, 286, 706, 818, 913, 1331, 1754
AsuHPI	GGTGA	4 cut(s)	788, 860, 1844, 1892
AsuII	TTCGAA	1 cut(s)	325
AvaII	GGWCC	6 cut(s)	215, 286, 706, 818, 913, 1331
BaeGI	GKGCMC	1 cut(s)	1321
BanII	GRGCYC	1 cut(s)	1089
BbsI	GAAGAC	3 cut(s)	434, 1382, 1974
Bbv12I	GWGCWC	2 cut(s)	1321, 1797
BbvI	GCAGC	6 cut(s)	11, 14, 17, 63, 505, 1409
BccI	CCATC	7 cut(s)	869, 1007, 1211, 1291, 1450, 1739, 1807
BceAI	ACGGC	1 cut(s)	941
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BciT130I	CCWGG	4 cut(s)	244, 396, 756, 837
BclI	TGATCA	2 cut(s)	652, 964
BcoDI	GTCTC	1 cut(s)	826
BfaI	CTAG	4 cut(s)	603, 905, 1029, 1551
BfmI	CTRYAG	2 cut(s)	506, 1165
BfoI	RGCGCY	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	1157
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	7 cut(s)	25, 28, 31, 77, 519, 1068, 1398
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	7 cut(s)	26, 29, 32, 78, 520, 1069, 1399
Bme1390I	CCNGG	4 cut(s)	244, 396, 756, 837
Bme18I	GGWCC	6 cut(s)	215, 286, 706, 818, 913, 1331
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgT120I	GGNCC	7 cut(s)	215, 286, 706, 818, 913, 1331, 1754
BmiI	GGNNCC	6 cut(s)	216, 1332, 1333, 1505, 1755, 1941
BmrFI	CCNGG	4 cut(s)	244, 396, 756, 837
BmrI	ACTGGG	1 cut(s)	1567
BmsI	GCATC	5 cut(s)	76, 343, 1363, 1501, 1652
BmuI	ACTGGG	1 cut(s)	1567
BpiI	GAAGAC	3 cut(s)	434, 1382, 1974
BpmI	CTGGAG	3 cut(s)	483, 1398, 1980
Bpu1102I	GCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	1117
BsaAI	YACGTR	1 cut(s)	1325
BsaI	GGTCTC	1 cut(s)	826
BsaJI	CCNNGG	7 cut(s)	242, 394, 395, 821, 916, 1144, 1335
BsaWI	WCCGGW	3 cut(s)	101, 288, 1364
Bsc4I	CCNNNNNNNGG	3 cut(s)	374, 636, 1328
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	4 cut(s)	563, 869, 1562, 1963
Bse3DI	GCAATG	2 cut(s)	1077, 1571
BseAI	TCCGGA	1 cut(s)	101
BseBI	CCWGG	4 cut(s)	244, 396, 756, 837
BseDI	CCNNGG	7 cut(s)	242, 394, 395, 821, 916, 1144, 1335
BseGI	GGATG	6 cut(s)	98, 864, 1194, 1240, 1822, 1897
BseLI	CCNNNNNNNGG	3 cut(s)	374, 636, 1328
BseMI	GCAATG	2 cut(s)	1077, 1571
BseMII	CTCAG	2 cut(s)	171, 1850
BseNI	ACTGG	4 cut(s)	563, 869, 1562, 1963
BseRI	GAGGAG	2 cut(s)	158, 1519
BseSI	GKGCMC	1 cut(s)	1321
BseXI	GCAGC	6 cut(s)	11, 14, 17, 63, 505, 1409
BsgI	GTGCAG	1 cut(s)	1890
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	3 cut(s)	8, 928, 1756
BshTI	ACCGGT	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	293
BsiHKAI	GWGCWC	2 cut(s)	1321, 1797
BsiSI	CCGG	4 cut(s)	102, 289, 1365, 1413
BslFI	GGGAC	4 cut(s)	228, 702, 1089, 1317
BslI	CCNNNNNNNGG	3 cut(s)	374, 636, 1328
BsmAI	GTCTC	1 cut(s)	826
BsmFI	GGGAC	4 cut(s)	228, 702, 1089, 1317
BsmI	GAATGC	1 cut(s)	1489
BsnI	GGCC	3 cut(s)	8, 928, 1756
Bso31I	GGTCTC	1 cut(s)	826
Bsp119I	TTCGAA	1 cut(s)	325
Bsp1286I	GDGCHC	3 cut(s)	1089, 1321, 1797
Bsp13I	TCCGGA	1 cut(s)	101
Bsp1407I	TGTACA	1 cut(s)	997
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	821
BspACI	CCGC	2 cut(s)	1068, 1498
BspANI	GGCC	3 cut(s)	8, 928, 1756
BspCNI	CTCAG	2 cut(s)	172, 1851
BspEI	TCCGGA	1 cut(s)	101
BspLI	GGNNCC	6 cut(s)	216, 1332, 1333, 1505, 1755, 1941
BspMAI	CTGCAG	1 cut(s)	510
BspPI	GGATC	5 cut(s)	233, 1031, 1245, 1729, 1786
BspQI	GCTCTTC	1 cut(s)	1228
BspT104I	TTCGAA	1 cut(s)	325
BspTI	CTTAAG	1 cut(s)	1157
BspTNI	GGTCTC	1 cut(s)	826
BsrDI	GCAATG	2 cut(s)	1077, 1571
BsrFI	RCCGGY	1 cut(s)	288
BsrGI	TGTACA	1 cut(s)	997
BsrI	ACTGG	4 cut(s)	563, 869, 1562, 1963
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	7 cut(s)	242, 394, 395, 821, 916, 1144, 1335
BssT1I	CCWWGG	3 cut(s)	821, 916, 1335
Bst2UI	CCWGG	4 cut(s)	244, 396, 756, 837
Bst4CI	ACNGT	4 cut(s)	993, 1169, 1442, 1792
Bst6I	CTCTTC	2 cut(s)	822, 1228
BstAFI	CTTAAG	1 cut(s)	1157
BstAPI	GCANNNNNTGC	1 cut(s)	1466
BstAUI	TGTACA	1 cut(s)	997
BstBAI	YACGTR	1 cut(s)	1325
BstBI	TTCGAA	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	160, 1182, 1282
BstDEI	CTNAG	3 cut(s)	180, 1688, 1859
BstDSI	CCRYGG	1 cut(s)	821
BstF5I	GGATG	6 cut(s)	98, 864, 1194, 1240, 1822, 1897
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	3 cut(s)	164, 309, 1471
BstMAI	GTCTC	1 cut(s)	826
BstMCI	CGRYCG	1 cut(s)	293
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 1403, 1466
BstNI	CCWGG	4 cut(s)	244, 396, 756, 837
BstNSI	RCATGY	2 cut(s)	721, 1291
BstSCI	CCNGG	4 cut(s)	242, 394, 754, 835
BstSFI	CTRYAG	2 cut(s)	506, 1165
BstSLI	GKGCMC	1 cut(s)	1321
BstV1I	GCAGC	6 cut(s)	11, 14, 17, 63, 505, 1409
BstV2I	GAAGAC	3 cut(s)	434, 1382, 1974
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BsuRI	GGCC	3 cut(s)	8, 928, 1756
BtgI	CCRYGG	1 cut(s)	821
BtgZI	GCGATG	1 cut(s)	1230
BtsCI	GGATG	6 cut(s)	98, 864, 1194, 1240, 1822, 1897
BtsIMutI	CAGTG	2 cut(s)	1174, 1447
Cac8I	GCNNGC	3 cut(s)	160, 1182, 1282
CfoI	GCGC	3 cut(s)	164, 309, 1471
Cfr10I	RCCGGY	1 cut(s)	288
Cfr13I	GGNCC	7 cut(s)	215, 286, 706, 818, 913, 1331, 1754
CpoI	CGGWCCG	1 cut(s)	286
Csp6I	GTAC	3 cut(s)	862, 921, 998
CspAI	ACCGGT	1 cut(s)	288
CspI	CGGWCCG	1 cut(s)	286
CviQI	GTAC	3 cut(s)	862, 921, 998
DdeI	CTNAG	3 cut(s)	180, 1688, 1859
DraI	TTTAAA	1 cut(s)	571
DrdI	GACNNNNNNGTC	1 cut(s)	289
DriI	GACNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	926
Eam1104I	CTCTTC	2 cut(s)	822, 1228
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	2 cut(s)	822, 1228
Eco130I	CCWWGG	3 cut(s)	821, 916, 1335
Eco24I	GRGCYC	1 cut(s)	1089
Eco31I	GGTCTC	1 cut(s)	826
Eco47I	GGWCC	6 cut(s)	215, 286, 706, 818, 913, 1331
Eco57I	CTGAAG	2 cut(s)	1260, 1689
EcoO109I	RGGNCCY	4 cut(s)	215, 706, 913, 1331
EcoRII	CCWGG	4 cut(s)	242, 394, 754, 835
EcoT14I	CCWWGG	3 cut(s)	821, 916, 1335
EcoT22I	ATGCAT	1 cut(s)	796
EcoT38I	GRGCYC	1 cut(s)	1089
ErhI	CCWWGG	3 cut(s)	821, 916, 1335
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	4 cut(s)	228, 702, 1089, 1317
FbaI	TGATCA	2 cut(s)	652, 964
FblI	GTMKAC	2 cut(s)	714, 1864
Fnu4HI	GCNGC	7 cut(s)	25, 28, 31, 77, 519, 1068, 1398
FokI	GGATG	6 cut(s)	85, 871, 1181, 1227, 1829, 1904
FriOI	GRGCYC	1 cut(s)	1089
Fsp4HI	GCNGC	7 cut(s)	25, 28, 31, 77, 519, 1068, 1398
FspBI	CTAG	4 cut(s)	603, 905, 1029, 1551
GlaI	GCGC	3 cut(s)	163, 308, 1470
GluI	GCNGC	7 cut(s)	25, 28, 31, 77, 519, 1068, 1398
GsuI	CTGGAG	3 cut(s)	483, 1398, 1980
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	8, 928, 1756
HapII	CCGG	4 cut(s)	102, 289, 1365, 1413
HhaI	GCGC	3 cut(s)	164, 309, 1471
Hin6I	GCGC	3 cut(s)	162, 307, 1469
HinP1I	GCGC	3 cut(s)	162, 307, 1469
HincII	GTYRAC	2 cut(s)	489, 715
HindII	GTYRAC	2 cut(s)	489, 715
HpaII	CCGG	4 cut(s)	102, 289, 1365, 1413
HphI	GGTGA	4 cut(s)	788, 860, 1844, 1892
Hpy166II	GTNNAC	6 cut(s)	489, 715, 923, 1319, 1705, 1865
Hpy188I	TCNGA	5 cut(s)	547, 676, 1422, 1669, 1677
Hpy188III	TCNNGA	8 cut(s)	102, 462, 609, 1010, 1040, 1190, 1776, 1954
Hpy8I	GTNNAC	6 cut(s)	489, 715, 923, 1319, 1705, 1865
Hpy99I	CGWCG	2 cut(s)	14, 286
HpyAV	CCTTC	7 cut(s)	237, 378, 681, 697, 767, 1837, 1924
HpyCH4III	ACNGT	4 cut(s)	993, 1169, 1442, 1792
HpyCH4IV	ACGT	1 cut(s)	1324
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 1403, 1466
HpyF3I	CTNAG	3 cut(s)	180, 1688, 1859
HpySE526I	ACGT	1 cut(s)	1324
HspAI	GCGC	3 cut(s)	162, 307, 1469
KflI	GGGWCCC	1 cut(s)	1331
Kpn2I	TCCGGA	1 cut(s)	101
Ksp22I	TGATCA	2 cut(s)	652, 964
LguI	GCTCTTC	1 cut(s)	1228
LmnI	GCTCC	3 cut(s)	1379, 1589, 1961
Lsp1109I	GCAGC	6 cut(s)	11, 14, 17, 63, 505, 1409
LweI	GCATC	5 cut(s)	76, 343, 1363, 1501, 1652
MaeI	CTAG	4 cut(s)	603, 905, 1029, 1551
MaeII	ACGT	1 cut(s)	1324
MaeIII	GTNAC	4 cut(s)	55, 341, 439, 1360
MboII	GAAGA	8 cut(s)	130, 439, 839, 1215, 1382, 1617, 1682, 1974
MfeI	CAATTG	3 cut(s)	617, 813, 1923
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	3 cut(s)	1089, 1321, 1797
MlyI	GAGTC	3 cut(s)	272, 505, 1870
MmeI	TCCRAC	6 cut(s)	143, 255, 361, 561, 782, 1876
MnlI	CCTC	9 cut(s)	136, 191, 325, 458, 904, 1114, 1139, 1540, 1876
Mph1103I	ATGCAT	1 cut(s)	796
MroI	TCCGGA	1 cut(s)	101
MseI	TTAA	7 cut(s)	150, 570, 785, 1158, 1524, 1695, 1934
MslI	CAYNNNNRTG	1 cut(s)	846
MspA1I	CMGCKG	2 cut(s)	1247, 1537
MspCI	CTTAAG	1 cut(s)	1157
MspI	CCGG	4 cut(s)	102, 289, 1365, 1413
MspR9I	CCNGG	4 cut(s)	244, 396, 756, 837
MunI	CAATTG	3 cut(s)	617, 813, 1923
Mva1269I	GAATGC	1 cut(s)	1489
MvaI	CCWGG	4 cut(s)	244, 396, 756, 837
MwoI	GCNNNNNNNGC	3 cut(s)	30, 1403, 1466
NcoI	CCATGG	1 cut(s)	821
NlaIV	GGNNCC	6 cut(s)	216, 1332, 1333, 1505, 1755, 1941
NmuCI	GTSAC	2 cut(s)	341, 1360
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	2 cut(s)	721, 1291
NspV	TTCGAA	1 cut(s)	325
OliI	CACNNNNGTG	1 cut(s)	846
PasI	CCCWGGG	1 cut(s)	395
PciI	ACATGT	2 cut(s)	717, 1287
PciSI	GCTCTTC	1 cut(s)	1228
PcsI	WCGNNNNNNNCGW	3 cut(s)	290, 1312, 1321
PctI	GAATGC	1 cut(s)	1489
PfeI	GAWTC	7 cut(s)	206, 468, 951, 1043, 1580, 1726, 1967
PflFI	GACNNNGTC	1 cut(s)	710
PinAI	ACCGGT	1 cut(s)	288
PkrI	GCNGC	7 cut(s)	26, 29, 32, 78, 520, 1069, 1399
PleI	GAGTC	3 cut(s)	271, 505, 1869
PpsI	GAGTC	3 cut(s)	271, 505, 1869
Ppu21I	YACGTR	1 cut(s)	1325
PpuMI	RGGWCCY	4 cut(s)	215, 706, 913, 1331
PscI	ACATGT	2 cut(s)	717, 1287
PsiI	TTATAA	1 cut(s)	390
Psp5II	RGGWCCY	4 cut(s)	215, 706, 913, 1331
Psp6I	CCWGG	4 cut(s)	242, 394, 754, 835
PspGI	CCWGG	4 cut(s)	242, 394, 754, 835
PspN4I	GGNNCC	6 cut(s)	216, 1332, 1333, 1505, 1755, 1941
PspPI	GGNCC	7 cut(s)	215, 286, 706, 818, 913, 1331, 1754
PspPPI	RGGWCCY	4 cut(s)	215, 706, 913, 1331
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	727
PsyI	GACNNNGTC	1 cut(s)	710
PvuII	CAGCTG	2 cut(s)	1247, 1537
RsaI	GTAC	3 cut(s)	863, 922, 999
RsaNI	GTAC	3 cut(s)	862, 921, 998
RseI	CAYNNNNRTG	1 cut(s)	846
Rsr2I	CGGWCCG	1 cut(s)	286
RsrII	CGGWCCG	1 cut(s)	286
SalI	GTCGAC	1 cut(s)	713
SapI	GCTCTTC	1 cut(s)	1228
SaqAI	TTAA	7 cut(s)	150, 570, 785, 1158, 1524, 1695, 1934
SatI	GCNGC	7 cut(s)	25, 28, 31, 77, 519, 1068, 1398
Sau96I	GGNCC	7 cut(s)	215, 286, 706, 818, 913, 1331, 1754
SchI	GAGTC	3 cut(s)	272, 505, 1870
ScrFI	CCNGG	4 cut(s)	244, 396, 756, 837
SduI	GDGCHC	3 cut(s)	1089, 1321, 1797
SfaNI	GCATC	5 cut(s)	76, 343, 1363, 1501, 1652
SfcI	CTRYAG	2 cut(s)	506, 1165
SfuI	TTCGAA	1 cut(s)	325
SinI	GGWCC	6 cut(s)	215, 286, 706, 818, 913, 1331
SmiMI	CAYNNNNRTG	1 cut(s)	846
SmlI	CTYRAG	2 cut(s)	1096, 1157
SmoI	CTYRAG	2 cut(s)	1096, 1157
SsiI	CCGC	2 cut(s)	1068, 1498
SspMI	CTAG	4 cut(s)	603, 905, 1029, 1551
StyD4I	CCNGG	4 cut(s)	242, 394, 754, 835
StyI	CCWWGG	3 cut(s)	821, 916, 1335
TaaI	ACNGT	4 cut(s)	993, 1169, 1442, 1792
TaiI	ACGT	1 cut(s)	1327
TaqI	TCGA	7 cut(s)	141, 281, 303, 325, 417, 714, 1295
TatI	WGTACW	2 cut(s)	861, 997
TauI	GCSGC	1 cut(s)	1070
TfiI	GAWTC	7 cut(s)	206, 468, 951, 1043, 1580, 1726, 1967
Tru1I	TTAA	7 cut(s)	150, 570, 785, 1158, 1524, 1695, 1934
Tru9I	TTAA	7 cut(s)	150, 570, 785, 1158, 1524, 1695, 1934
TscAI	CASTG	2 cut(s)	1174, 1447
TseFI	GTSAC	2 cut(s)	341, 1360
TseI	GCWGC	6 cut(s)	24, 27, 30, 76, 518, 1397
Tsp45I	GTSAC	2 cut(s)	341, 1360
TspDTI	ATGAA	4 cut(s)	17, 425, 447, 1253
TspGWI	ACGGA	3 cut(s)	299, 1052, 1727
TspRI	CASTG	2 cut(s)	1174, 1447
Tth111I	GACNNNGTC	1 cut(s)	710
Vha464I	CTTAAG	1 cut(s)	1157
VneI	GTGCAC	1 cut(s)	1317
VpaK11BI	GGWCC	6 cut(s)	215, 286, 706, 818, 913, 1331
XapI	RAATTY	5 cut(s)	132, 384, 566, 1621, 1759
XceI	RCATGY	2 cut(s)	721, 1291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmiI	GTMKAC	2 cut(s)	714, 1864
XspI	CTAG	4 cut(s)	603, 905, 1029, 1551
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.