Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

25021200 .. 25022564

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGACAGCGTATCAACCAATGAAACCAGGGAAGGCTGGTTTGGAAGAGCCACTCGAGCAGATTCACAAGATCAGAATTACTCTCTCCTCCAAGAATGTCAAGAACTTGGAAAAAGTGTGTACTGATTTGGTTCGTGGAGCTAAGGACAAGAGACTGAGAGTTAAGGGTCCAGTCAGAATGCCCACCAAGGTTCTCAAGATCACTACCCGTAAAGCTCCTTGTGGTGAAGGAACCAACACATGGGACAGATTCGAGCTTAGGGTACACAAGCGAGTTATAGATCTTTTCAGCTCTCCTGATGTGGTCAAGCAGATCACCTCCATCACCATTGAACCTGGTGTTGAAGTTGAGGTCACCATCGCTGACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

124

Amino Acids

13.88

Weight (kDa)

9.73

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	26 - 120	1.5e-28	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	124, 267
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	335, 347
AjnI	CCWGG	2 cut(s)	28, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	4 cut(s)	143, 218, 259, 294
AluI	AGCT	4 cut(s)	143, 218, 259, 294
Alw26I	GTCTC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	4 cut(s)	239, 310, 319, 349
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	170
BccI	CCATC	2 cut(s)	332, 368
BciT130I	CCWGG	2 cut(s)	30, 339
BcoDI	GTCTC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	30, 339
Bme18I	GGWCC	1 cut(s)	170
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	171, 235
BmrFI	CCNGG	2 cut(s)	30, 339
Bpu10I	CCTNAGC	2 cut(s)	144, 260
BpuEI	CTTGAG	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	29, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	30, 339
BseDI	CCNNGG	2 cut(s)	29, 189
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	56
Bsp143I	GATC	4 cut(s)	72, 201, 283, 315
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	171, 235
BspQI	GCTCTTC	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	29, 189
BssMI	GATC	4 cut(s)	72, 201, 283, 315
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	30, 339
Bst6I	CTCTTC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	144, 158, 260
BstEII	GGTNACC	1 cut(s)	355
BstKTI	GATC	4 cut(s)	75, 204, 286, 318
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	4 cut(s)	72, 201, 283, 315
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	2 cut(s)	30, 339
BstPI	GGTNACC	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	28, 337
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	170
CsiI	ACCWGGT	1 cut(s)	337
Csp6I	GTAC	2 cut(s)	123, 266
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	6 cut(s)	38, 52, 143, 218, 259, 294
CviKI_1	RGCY	6 cut(s)	38, 52, 143, 218, 259, 294
CviQI	GTAC	2 cut(s)	123, 266
DdeI	CTNAG	3 cut(s)	144, 158, 260
DpnI	GATC	4 cut(s)	74, 203, 285, 317
DpnII	GATC	4 cut(s)	72, 201, 283, 315
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	56
Eco91I	GGTNACC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	28, 337
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	246
FaiI	YATR	2 cut(s)	244, 281
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	1 cut(s)	242
Hin1II	CATG	1 cut(s)	246
HinfI	GANTC	3 cut(s)	64, 252, 368
HphI	GGTGA	4 cut(s)	239, 310, 319, 349
Hpy166II	GTNNAC	2 cut(s)	123, 268
Hpy188I	TCNGA	2 cut(s)	77, 179
Hpy188III	TCNNGA	3 cut(s)	103, 199, 299
Hpy8I	GTNNAC	2 cut(s)	123, 268
HpyAV	CCTTC	2 cut(s)	28, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	3 cut(s)	144, 158, 260
Hsp92II	CATG	1 cut(s)	246
Kzo9I	GATC	4 cut(s)	72, 201, 283, 315
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	140, 223
LpnPI	CCDG	7 cut(s)	15, 24, 42, 186, 312, 324, 351
MabI	ACCWGGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	4 cut(s)	74, 203, 285, 317
MboI	GATC	4 cut(s)	72, 201, 283, 315
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	3 cut(s)	100, 331, 346
MseI	TTAA	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	30, 339
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	2 cut(s)	30, 339
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	4 cut(s)	72, 201, 283, 315
NlaIII	CATG	1 cut(s)	246
NlaIV	GGNNCC	2 cut(s)	171, 235
NmuCI	GTSAC	1 cut(s)	355
PaeR7I	CTCGAG	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	42
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	64, 252
PflMI	CCANNNNNTGG	1 cut(s)	243
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	28, 337
PspEI	GGTNACC	1 cut(s)	355
PspGI	CCWGG	2 cut(s)	28, 337
PspN4I	GGNNCC	2 cut(s)	171, 235
PspPI	GGNCC	1 cut(s)	170
PspXI	VCTCGAGB	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	2 cut(s)	124, 267
RsaNI	GTAC	2 cut(s)	123, 266
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	165
Sau3AI	GATC	4 cut(s)	72, 201, 283, 315
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	30, 339
SetI	ASST	8 cut(s)	145, 195, 220, 261, 296, 323, 340, 357
SexAI	ACCWGGT	1 cut(s)	337
Sfr274I	CTCGAG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	56, 197
SmoI	CTYRAG	2 cut(s)	56, 197
Sse9I	AATT	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	28, 337
StyI	CCWWGG	1 cut(s)	189
TaqI	TCGA	2 cut(s)	57, 255
TasI	AATT	1 cut(s)	78
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	64, 252
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.