Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Forward (+)

29871727 .. 29872934

Gene Structure 1208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTACGGCGGCATACCAGGTACCTGTGAAACCTGCAAAGCTGGGTTTGGAGGGGCAACAGCAAGAACCGGTTCGTAGGATTAGGATCACACTCTCCTCCACCAAAGTGAAGAACGTTGAGAAAGTTTGCAGTGATCTCATAAAGAGAGCCAAGGAACATCCTGATCCCATCAGGACTAAGGGTCCAGTGCGCATGCCTACTAAGACTCTTCGCATCACTACAAGGAAGGCCCCTTGTGGAGAAGGTACCAACACCTGGGATAGGTTTGAGATGCGTATTCACAAAAGAGTGATGGACCTCTTCACCACTCCAGGGACGGTCAAGACGATTACTGCAATTGACATGGAACCAGGCGTGGAGGTTGAAGTTACCATTGGTGACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

130

Amino Acids

14.45

Weight (kDa)

9.82

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	29 - 125	2.8e-25	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	43
Acc65I	GGTACC	2 cut(s)	22, 248
AccB1I	GGYRCC	2 cut(s)	22, 248
AccB7I	CCANNNNNTGG	1 cut(s)	258
AciI	CCGC	1 cut(s)	11
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	2 cut(s)	95, 161
AfaI	GTAC	2 cut(s)	24, 250
AfiI	CCNNNNNNNGG	3 cut(s)	258, 264, 315
AgeI	ACCGGT	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	368
AhdI	GACNNNNNGTC	1 cut(s)	183
AjnI	CCWGG	4 cut(s)	18, 257, 313, 352
AjuI	GAANNNNNNNTTGG	1 cut(s)	360
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
AlwI	GGATC	2 cut(s)	95, 161
AoxI	GGCC	1 cut(s)	231
AsiGI	ACCGGT	1 cut(s)	70
Asp700I	GAANNNNTTC	1 cut(s)	72
Asp718I	GGTACC	2 cut(s)	22, 248
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	3 cut(s)	185, 232, 298
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	185, 298
BanI	GGYRCC	2 cut(s)	22, 248
BccI	CCATC	2 cut(s)	179, 289
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	4 cut(s)	20, 259, 315, 354
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	4 cut(s)	20, 259, 315, 354
Bme18I	GGWCC	2 cut(s)	185, 298
BmeRI	GACNNNNNGTC	1 cut(s)	183
BmgT120I	GGNCC	3 cut(s)	185, 232, 298
BmiI	GGNNCC	5 cut(s)	24, 186, 234, 250, 351
BmrFI	CCNGG	4 cut(s)	20, 259, 315, 354
BmsI	GCATC	2 cut(s)	225, 264
BpmI	CTGGAG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	153, 258, 314
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 264, 315
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	188
Bse8I	GATNNNNATC	1 cut(s)	86
BseBI	CCWGG	4 cut(s)	20, 259, 315, 354
BseDI	CCNNGG	3 cut(s)	153, 258, 314
BseGI	GGATG	1 cut(s)	160
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	3 cut(s)	258, 264, 315
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	43
BshFI	GGCC	1 cut(s)	233
BshNI	GGYRCC	2 cut(s)	22, 248
BshTI	ACCGGT	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	3 cut(s)	258, 264, 315
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	87, 136, 166
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	233
BspLI	GGNNCC	5 cut(s)	24, 186, 234, 250, 351
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	95, 161
BspT107I	GGYRCC	2 cut(s)	22, 248
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	3 cut(s)	153, 258, 314
BssMI	GATC	3 cut(s)	87, 136, 166
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	4 cut(s)	20, 259, 315, 354
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	2 cut(s)	216, 308
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	180, 204
BstENI	CCTNNNNNAGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	3 cut(s)	90, 139, 169
BstMBI	GATC	3 cut(s)	87, 136, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	4 cut(s)	20, 259, 315, 354
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	4 cut(s)	18, 257, 313, 352
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	139, 195
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	197
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	3 cut(s)	185, 232, 298
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	23, 249
CspAI	ACCGGT	1 cut(s)	70
CviAII	CATG	2 cut(s)	196, 346
CviJI	RGCY	4 cut(s)	5, 43, 152, 233
CviKI_1	RGCY	4 cut(s)	5, 43, 152, 233
CviQI	GTAC	2 cut(s)	23, 249
DdeI	CTNAG	2 cut(s)	180, 204
DpnI	GATC	3 cut(s)	89, 138, 168
DpnII	GATC	3 cut(s)	87, 136, 166
DriI	GACNNNNNGTC	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	216, 308
Eam1105I	GACNNNNNGTC	1 cut(s)	183
EarI	CTCTTC	2 cut(s)	216, 308
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	185, 298
EcoNI	CCTNNNNNAGG	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	4 cut(s)	18, 257, 313, 352
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	199, 349
FaiI	YATR	4 cut(s)	16, 143, 197, 347
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	2 cut(s)	195, 345
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	12
FspAI	RTGCGCAY	1 cut(s)	194
FspI	TGCGCA	1 cut(s)	194
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	12
GsaI	CCCAGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	199, 349
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	298
Hpy188III	TCNNGA	3 cut(s)	164, 175, 325
HpyAV	CCTTC	2 cut(s)	223, 239
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	38, 132, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	180, 204
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	199, 349
HspAI	GCGC	1 cut(s)	193
KpnI	GGTACC	2 cut(s)	26, 252
Kzo9I	GATC	3 cut(s)	87, 136, 166
LweI	GCATC	2 cut(s)	225, 264
MabI	ACCWGGT	1 cut(s)	18
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	370, 380
MalI	GATC	3 cut(s)	89, 138, 168
MboI	GATC	3 cut(s)	87, 136, 166
MboII	GAAGA	3 cut(s)	124, 203, 295
MfeI	CAATTG	1 cut(s)	339
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	4 cut(s)	46, 109, 311, 355
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	1 cut(s)	388
MslI	CAYNNNNRTG	1 cut(s)	107
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	4 cut(s)	20, 259, 315, 354
MunI	CAATTG	1 cut(s)	339
MvaI	CCWGG	4 cut(s)	20, 259, 315, 354
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	87, 136, 166
NlaIII	CATG	2 cut(s)	199, 349
NlaIV	GGNNCC	5 cut(s)	24, 186, 234, 250, 351
NmuCI	GTSAC	1 cut(s)	380
NsbI	TGCGCA	1 cut(s)	194
NspI	RCATGY	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	107
PaeI	GCATGC	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PdmI	GAANNNNTTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	258
PinAI	ACCGGT	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	4 cut(s)	18, 257, 313, 352
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	4 cut(s)	18, 257, 313, 352
PspN4I	GGNNCC	5 cut(s)	24, 186, 234, 250, 351
PspPI	GGNCC	3 cut(s)	185, 232, 298
RsaI	GTAC	2 cut(s)	24, 250
RsaNI	GTAC	2 cut(s)	23, 249
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	388
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	87, 136, 166
Sau96I	GGNCC	3 cut(s)	185, 232, 298
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	4 cut(s)	20, 259, 315, 354
SexAI	ACCWGGT	1 cut(s)	18
SfaNI	GCATC	2 cut(s)	225, 264
SinI	GGWCC	2 cut(s)	185, 298
SmiMI	CAYNNNNRTG	1 cut(s)	107
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	1 cut(s)	11
StyD4I	CCNGG	4 cut(s)	18, 257, 313, 352
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	120
TasI	AATT	1 cut(s)	339
TauI	GCSGC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TscAI	CASTG	2 cut(s)	139, 195
TseFI	GTSAC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	380
TspRI	CASTG	2 cut(s)	139, 195
Van91I	CCANNNNNTGG	1 cut(s)	258
VpaK11BI	GGWCC	2 cut(s)	185, 298
XagI	CCTNNNNNAGG	1 cut(s)	262
XceI	RCATGY	1 cut(s)	199
XmnI	GAANNNNTTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.