Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002962.1

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

24701 .. 26214

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002962.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggaggtcacgccaaagaagtcgtggttcagtcatagccatagcctccgccgatataacggcggattctgctctccagccaaagcgaaagccgccaccagacccgtcttctttggcgtacgggaggtcggactcatggcctctgttttcctcctctgcgtcctcgttttgaggttgaagccgctgctccagagctccctcaattctccgccgtcacctagagtaaaaacagagaagcttgaaaaccatggcttacgcagcgatgaaacccaccaagctaggtctcgaggagacacaggagcagatccagaagatcaggatcactgtctcttccaagaacgtcaagaacctcgagaaagtgccaaggacaagaggctcagggtgaagggaccagtgaggatgcctaccaaggttctgcacattaccaccaggaccagtgagaagttgcgtgggcacaagcgtgttattgatctcttcagctctcctgatgttgtgaagcagatcacctccattacaattgaacctggtgtcgaagtggaggtcacaattgccaaccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

186

Amino Acids

20.92

Weight (kDa)

9.85

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	49, 63, 93, 182, 209
AclWI	GGATC	2 cut(s)	299, 327
AcuI	CTGAAG	1 cut(s)	460
AfaI	GTAC	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	178, 242, 521
AjnI	CCWGG	2 cut(s)	428, 523
AleI	CACNNNNGTG	1 cut(s)	459
AluBI	AGCT	4 cut(s)	195, 238, 278, 480
AluI	AGCT	4 cut(s)	195, 238, 278, 480
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	3 cut(s)	285, 288, 332
AlwI	GGATC	2 cut(s)	299, 327
Ama87I	CYCGRG	2 cut(s)	285, 351
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	184, 258
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
AspS9I	GGNCC	2 cut(s)	389, 432
AsuHPI	GGTGA	3 cut(s)	207, 394, 496
AvaI	CYCGRG	2 cut(s)	285, 351
AvaII	GGWCC	2 cut(s)	389, 432
BaeGI	GKGCMC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	171, 270
BceAI	ACGGC	2 cut(s)	76, 196
BciT130I	CCWGG	2 cut(s)	430, 525
BcoDI	GTCTC	3 cut(s)	285, 288, 332
BfaI	CTAG	2 cut(s)	219, 279
BisI	GCNGC	4 cut(s)	93, 182, 185, 259
BlsI	GCNGC	4 cut(s)	94, 183, 186, 260
Bme1390I	CCNGG	2 cut(s)	430, 525
Bme18I	GGWCC	2 cut(s)	389, 432
BmeT110I	CYCGRG	2 cut(s)	285, 351
BmgT120I	GGNCC	2 cut(s)	389, 432
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	2 cut(s)	430, 525
BmsI	GCATC	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	100
BpmI	CTGGAG	2 cut(s)	60, 173
Bpu10I	CCTNAGC	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	247, 363, 408
Bse1I	ACTGG	2 cut(s)	392, 435
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	430, 525
BseDI	CCNNGG	3 cut(s)	247, 363, 408
BseGI	GGATG	1 cut(s)	405
BseJI	GATNNNNATC	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	391
BseNI	ACTGG	2 cut(s)	392, 435
BseRI	GAGGAG	2 cut(s)	143, 303
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	171, 270
BsgI	GTGCAG	1 cut(s)	401
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	197
BsiHKCI	CYCGRG	2 cut(s)	285, 351
BsiWI	CGTACG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	402
BsmAI	GTCTC	3 cut(s)	285, 288, 332
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	288
BsoBI	CYCGRG	2 cut(s)	285, 351
Bsp1286I	GDGCHC	2 cut(s)	197, 456
Bsp143I	GATC	5 cut(s)	304, 313, 319, 469, 501
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	5 cut(s)	49, 63, 93, 182, 209
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	390
BspPI	GGATC	2 cut(s)	299, 327
BspTNI	GGTCTC	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	392, 435
BssECI	CCNNGG	3 cut(s)	247, 363, 408
BssMI	GATC	5 cut(s)	304, 313, 319, 469, 501
BssT1I	CCWWGG	3 cut(s)	247, 363, 408
Bst2UI	CCWGG	2 cut(s)	430, 525
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	2 cut(s)	335, 479
BstDEI	CTNAG	1 cut(s)	377
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	405
BstKTI	GATC	5 cut(s)	307, 316, 322, 472, 504
BstMAI	GTCTC	3 cut(s)	285, 288, 332
BstMBI	GATC	5 cut(s)	304, 313, 319, 469, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 92, 258
BstNI	CCWGG	2 cut(s)	430, 525
BstSCI	CCNGG	2 cut(s)	428, 523
BstSLI	GKGCMC	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	171, 270
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	322, 399, 442
Cfr13I	GGNCC	2 cut(s)	389, 432
CseI	GACGC	1 cut(s)	148
CsiI	ACCWGGT	1 cut(s)	523
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	2 cut(s)	136, 248
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	5 cut(s)	306, 315, 321, 471, 503
DpnII	GATC	5 cut(s)	304, 313, 319, 469, 501
Eam1104I	CTCTTC	2 cut(s)	335, 479
EarI	CTCTTC	2 cut(s)	335, 479
EciI	GGCGGA	3 cut(s)	38, 78, 198
Ecl136II	GAGCTC	1 cut(s)	195
Eco130I	CCWWGG	3 cut(s)	247, 363, 408
Eco24I	GRGCYC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	389, 432
Eco53kI	GAGCTC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	460
Eco88I	CYCGRG	2 cut(s)	285, 351
EcoICRI	GAGCTC	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	428, 523
EcoT14I	CCWWGG	3 cut(s)	247, 363, 408
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	3 cut(s)	247, 363, 408
FaeI	CATG	2 cut(s)	139, 251
FaiI	YATR	5 cut(s)	36, 42, 57, 137, 249
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	2 cut(s)	135, 247
Fnu4HI	GCNGC	4 cut(s)	93, 182, 185, 259
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	4 cut(s)	93, 182, 185, 259
FspBI	CTAG	2 cut(s)	219, 279
GluI	GCNGC	4 cut(s)	93, 182, 185, 259
GsuI	CTGGAG	2 cut(s)	60, 173
HaeIII	GGCC	1 cut(s)	140
HgaI	GACGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	139, 251
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	66, 132
HphI	GGTGA	3 cut(s)	207, 394, 496
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	7 cut(s)	190, 285, 308, 317, 344, 353, 485
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	1 cut(s)	418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 92, 258
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	2 cut(s)	139, 251
Kzo9I	GATC	5 cut(s)	304, 313, 319, 469, 501
LmnI	GCTCC	3 cut(s)	192, 200, 299
Lsp1109I	GCAGC	2 cut(s)	171, 270
LweI	GCATC	1 cut(s)	390
MabI	ACCWGGT	1 cut(s)	523
MaeI	CTAG	2 cut(s)	219, 279
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	3 cut(s)	7, 213, 541
MalI	GATC	5 cut(s)	306, 315, 321, 471, 503
MboI	GATC	5 cut(s)	304, 313, 319, 469, 501
MboII	GAAGA	4 cut(s)	100, 322, 323, 466
MfeI	CAATTG	2 cut(s)	516, 546
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	197, 456
MluCI	AATT	3 cut(s)	202, 516, 546
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	109
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	430, 525
MunI	CAATTG	2 cut(s)	516, 546
MvaI	CCWGG	2 cut(s)	430, 525
MwoI	GCNNNNNNNGC	3 cut(s)	69, 92, 258
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	5 cut(s)	304, 313, 319, 469, 501
NlaIII	CATG	2 cut(s)	139, 251
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	3 cut(s)	7, 213, 541
OliI	CACNNNNGTG	1 cut(s)	459
PaeR7I	CTCGAG	2 cut(s)	285, 351
PfeI	GAWTC	1 cut(s)	66
Pfl23II	CGTACG	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	94, 183, 186, 260
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	428, 523
PspGI	CCWGG	2 cut(s)	428, 523
PspLI	CGTACG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	2 cut(s)	389, 432
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	197
SatI	GCNGC	4 cut(s)	93, 182, 185, 259
Sau3AI	GATC	5 cut(s)	304, 313, 319, 469, 501
Sau96I	GGNCC	2 cut(s)	389, 432
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	430, 525
SduI	GDGCHC	2 cut(s)	197, 456
SexAI	ACCWGGT	1 cut(s)	523
SfaNI	GCATC	1 cut(s)	390
Sfr274I	CTCGAG	2 cut(s)	285, 351
SinI	GGWCC	2 cut(s)	389, 432
SlaI	CTCGAG	2 cut(s)	285, 351
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	2 cut(s)	285, 351
SmoI	CTYRAG	2 cut(s)	285, 351
Sse9I	AATT	3 cut(s)	202, 516, 546
SsiI	CCGC	5 cut(s)	49, 63, 93, 182, 209
SspMI	CTAG	2 cut(s)	219, 279
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	428, 523
StyI	CCWWGG	3 cut(s)	247, 363, 408
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	3 cut(s)	286, 352, 531
TasI	AATT	3 cut(s)	202, 516, 546
TauI	GCSGC	2 cut(s)	95, 184
TfiI	GAWTC	1 cut(s)	66
TscAI	CASTG	3 cut(s)	329, 399, 442
TseFI	GTSAC	3 cut(s)	7, 213, 541
TseI	GCWGC	2 cut(s)	184, 258
Tsp45I	GTSAC	3 cut(s)	7, 213, 541
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	3 cut(s)	329, 399, 442
VpaK11BI	GGWCC	2 cut(s)	389, 432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XhoI	CTCGAG	2 cut(s)	285, 351
XspI	CTAG	2 cut(s)	219, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.