Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

16471361 .. 16472409

Gene Structure 1049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGACAGCGTATCAACCAATGAAACCAGGAAAGGCTGGTTTGGAAGAGCCACTCGAGCAGATTCACAAGATCAGGATTACTCTCTCCTCCAAGAATGTCAAGAACCTTGAGAAAGTGTGCACTGATTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTCAAGGGACCAGTGAGAATGCCCACTAAGGTTCTCAAGATCACTACCCGAAAAGCTCCCTGTGGTGAAGGAACCAATACATGGGACAGATTTGAACTTAGGGTGCACAAGCGAGTGATTGATCTCTTCAGCTCTCCTGATGTGGTCAAGCAAATCACATCCATCACCATTGAACCTGGTGTTGAGGTTGAGGTCACCATCGCCGACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

124

Amino Acids

13.88

Weight (kDa)

9.73

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	26 - 120	1.5e-28	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	257, 335
AhdI	GACNNNNNGTC	1 cut(s)	161
AjnI	CCWGG	2 cut(s)	28, 337
AluBI	AGCT	3 cut(s)	143, 218, 294
AluI	AGCT	3 cut(s)	143, 218, 294
Alw21I	GWGCWC	2 cut(s)	125, 270
Alw26I	GTCTC	1 cut(s)	148
Alw44I	GTGCAC	2 cut(s)	121, 266
Ama87I	CYCGRG	1 cut(s)	56
ApaLI	GTGCAC	2 cut(s)	121, 266
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	3 cut(s)	239, 319, 349
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	170
BaeGI	GKGCMC	2 cut(s)	125, 270
Bbv12I	GWGCWC	2 cut(s)	125, 270
BccI	CCATC	2 cut(s)	332, 368
BciT130I	CCWGG	2 cut(s)	30, 339
BcoDI	GTCTC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	30, 339
Bme18I	GGWCC	1 cut(s)	170
BmeRI	GACNNNNNGTC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	171, 235
BmrFI	CCNGG	2 cut(s)	30, 339
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	2 cut(s)	131, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	30, 339
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	2 cut(s)	125, 270
BsiHKAI	GWGCWC	2 cut(s)	125, 270
BsiHKCI	CYCGRG	1 cut(s)	56
BslFI	GGGAC	2 cut(s)	183, 260
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	2 cut(s)	183, 260
BsmI	GAATGC	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	125, 270
Bsp143I	GATC	3 cut(s)	72, 201, 283
BspLI	GGNNCC	2 cut(s)	171, 235
BspQI	GCTCTTC	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	173
BssMI	GATC	3 cut(s)	72, 201, 283
Bst2UI	CCWGG	2 cut(s)	30, 339
Bst6I	CTCTTC	2 cut(s)	42, 293
BstDEI	CTNAG	4 cut(s)	144, 158, 189, 260
BstEII	GGTNACC	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	320
BstKTI	GATC	3 cut(s)	75, 204, 286
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	3 cut(s)	72, 201, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	2 cut(s)	30, 339
BstPI	GGTNACC	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	28, 337
BstSLI	GKGCMC	2 cut(s)	125, 270
BtgZI	GCGATG	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	320
BtsIMutI	CAGTG	2 cut(s)	123, 180
Cfr13I	GGNCC	1 cut(s)	170
CsiI	ACCWGGT	1 cut(s)	337
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	5 cut(s)	38, 52, 143, 218, 294
CviKI_1	RGCY	5 cut(s)	38, 52, 143, 218, 294
DdeI	CTNAG	4 cut(s)	144, 158, 189, 260
DpnI	GATC	3 cut(s)	74, 203, 285
DpnII	GATC	3 cut(s)	72, 201, 283
DriI	GACNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	2 cut(s)	42, 293
Eam1105I	GACNNNNNGTC	1 cut(s)	161
EarI	CTCTTC	2 cut(s)	42, 293
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	56
Eco91I	GGTNACC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	28, 337
FaeI	CATG	1 cut(s)	246
FaiI	YATR	1 cut(s)	244
FaqI	GGGAC	2 cut(s)	183, 260
FatI	CATG	1 cut(s)	242
FokI	GGATG	1 cut(s)	307
Hin1II	CATG	1 cut(s)	246
HinfI	GANTC	3 cut(s)	64, 162, 368
HphI	GGTGA	3 cut(s)	239, 319, 349
Hpy166II	GTNNAC	2 cut(s)	123, 268
Hpy188III	TCNNGA	4 cut(s)	76, 103, 199, 299
Hpy8I	GTNNAC	2 cut(s)	123, 268
HpyAV	CCTTC	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	123, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	4 cut(s)	144, 158, 189, 260
Hsp92II	CATG	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	72, 201, 283
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	140, 223
LpnPI	CCDG	9 cut(s)	15, 24, 42, 61, 186, 235, 312, 324, 351
MabI	ACCWGGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	74, 203, 285
MboI	GATC	3 cut(s)	72, 201, 283
MboII	GAAGA	2 cut(s)	59, 280
MhlI	GDGCHC	2 cut(s)	125, 270
MlyI	GAGTC	2 cut(s)	171, 362
MnlI	CCTC	3 cut(s)	100, 340, 346
MspR9I	CCNGG	2 cut(s)	30, 339
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	2 cut(s)	30, 339
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	3 cut(s)	72, 201, 283
NlaIII	CATG	1 cut(s)	246
NlaIV	GGNNCC	2 cut(s)	171, 235
NmuCI	GTSAC	1 cut(s)	355
PaeR7I	CTCGAG	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	42
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	243
PleI	GAGTC	2 cut(s)	170, 362
PpsI	GAGTC	2 cut(s)	170, 362
Psp6I	CCWGG	2 cut(s)	28, 337
PspEI	GGTNACC	1 cut(s)	355
PspGI	CCWGG	2 cut(s)	28, 337
PspN4I	GGNNCC	2 cut(s)	171, 235
PspPI	GGNCC	1 cut(s)	170
PspXI	VCTCGAGB	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	72, 201, 283
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	2 cut(s)	171, 362
ScrFI	CCNGG	2 cut(s)	30, 339
SduI	GDGCHC	2 cut(s)	125, 270
SetI	ASST	8 cut(s)	111, 145, 195, 220, 296, 340, 351, 357
SexAI	ACCWGGT	1 cut(s)	337
Sfr274I	CTCGAG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	56
SmlI	CTYRAG	3 cut(s)	56, 110, 197
SmoI	CTYRAG	3 cut(s)	56, 110, 197
StyD4I	CCNGG	2 cut(s)	28, 337
TaqI	TCGA	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	64
TscAI	CASTG	2 cut(s)	130, 180
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	2 cut(s)	130, 180
Van91I	CCANNNNNTGG	1 cut(s)	243
VneI	GTGCAC	2 cut(s)	121, 266
VpaK11BI	GGWCC	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.