Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Forward (+)

38124350 .. 38125151

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0329300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTACGCGCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTGGGCATCATGAAGACTACTTCCGAGAGAGGTAGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCCTACAGAGATGCAGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

190

Amino Acids

20.94

Weight (kDa)

5.84

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	1.6e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	160
AciI	CCGC	2 cut(s)	501, 510
AclWI	GGATC	5 cut(s)	118, 131, 141, 330, 343
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	2 cut(s)	329, 452
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	428
AhlI	ACTAGT	1 cut(s)	314
AjnI	CCWGG	3 cut(s)	92, 322, 417
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	3 cut(s)	7, 199, 535
AluI	AGCT	3 cut(s)	7, 199, 535
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	5 cut(s)	118, 131, 141, 330, 343
Ama87I	CYCGRG	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	50, 293
Asp700I	GAANNNNTTC	2 cut(s)	316, 432
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	407, 467
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	2 cut(s)	123, 335
BanII	GRGCYC	2 cut(s)	262, 537
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	62, 280
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	3 cut(s)	94, 324, 419
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	2 cut(s)	168, 550
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	2 cut(s)	51, 294
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	2 cut(s)	52, 295
Bme1390I	CCNGG	4 cut(s)	55, 94, 324, 419
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	5 cut(s)	102, 125, 245, 337, 358
BmrFI	CCNGG	4 cut(s)	55, 94, 324, 419
BmsI	GCATC	2 cut(s)	480, 547
BpiI	GAAGAC	1 cut(s)	485
BpmI	CTGGAG	3 cut(s)	93, 179, 399
Bpu1102I	GCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	3 cut(s)	113, 282, 551
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 452
Bse1I	ACTGG	4 cut(s)	205, 334, 367, 376
BseBI	CCWGG	3 cut(s)	94, 324, 419
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	37, 389
BseLI	CCNNNNNNNGG	2 cut(s)	329, 452
BseMII	CTCAG	1 cut(s)	550
BseNI	ACTGG	4 cut(s)	205, 334, 367, 376
BseRI	GAGGAG	2 cut(s)	420, 423
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	62, 280
BseYI	CCCAGC	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	537
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	329, 452
BsmAI	GTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	3 cut(s)	262, 306, 537
Bsp143I	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
Bsp1720I	GCTNAGC	1 cut(s)	536
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	2 cut(s)	501, 510
BspCNI	CTCAG	1 cut(s)	549
BspFNI	CGCG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	5 cut(s)	102, 125, 245, 337, 358
BspPI	GGATC	5 cut(s)	118, 131, 141, 330, 343
BsrI	ACTGG	4 cut(s)	205, 334, 367, 376
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	3 cut(s)	94, 324, 419
Bst6I	CTCTTC	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	536, 570
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	37, 389
BstFNI	CGCG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	7 cut(s)	115, 126, 136, 189, 338, 346, 415
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	507, 566
BstNI	CCWGG	3 cut(s)	94, 324, 419
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	4 cut(s)	53, 92, 322, 417
BstSFI	CTRYAG	2 cut(s)	168, 550
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	62, 280
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	4 cut(s)	123, 133, 186, 335
BstYI	RGATCY	4 cut(s)	123, 133, 186, 335
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	37, 389
BtsIMutI	CAGTG	1 cut(s)	360
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	6 cut(s)	215, 307, 448, 452, 475, 565
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	2 cut(s)	536, 570
DpnI	GATC	7 cut(s)	114, 125, 135, 188, 337, 345, 414
DpnII	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	262, 537
Eco47I	GGWCC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	535
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	535
EcoRII	CCWGG	3 cut(s)	92, 322, 417
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	453
EcoT38I	GRGCYC	2 cut(s)	262, 537
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	6 cut(s)	218, 310, 451, 455, 478, 568
FaiI	YATR	9 cut(s)	177, 210, 216, 308, 449, 453, 476, 507, 566
FatI	CATG	6 cut(s)	214, 306, 447, 451, 474, 564
Fnu4HI	GCNGC	2 cut(s)	51, 294
FokI	GGATG	2 cut(s)	44, 376
FriOI	GRGCYC	2 cut(s)	262, 537
Fsp4HI	GCNGC	2 cut(s)	51, 294
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	51, 294
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	3 cut(s)	93, 179, 399
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	6 cut(s)	218, 310, 451, 455, 478, 568
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	407, 467
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	5 cut(s)	110, 182, 247, 263, 475
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	1 cut(s)	443
HpyCH4V	TGCA	4 cut(s)	285, 397, 451, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	507, 566
HpyF3I	CTNAG	2 cut(s)	536, 570
Hsp92II	CATG	6 cut(s)	218, 310, 451, 455, 478, 568
HspAI	GCGC	1 cut(s)	160
Kzo9I	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	62, 280
LweI	GCATC	2 cut(s)	480, 547
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	7 cut(s)	114, 125, 135, 188, 337, 345, 414
MboI	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
MboII	GAAGA	2 cut(s)	289, 490
MflI	RGATCY	4 cut(s)	123, 133, 186, 335
MhlI	GDGCHC	3 cut(s)	262, 306, 537
MluCI	AATT	1 cut(s)	349
Mph1103I	ATGCAT	1 cut(s)	453
MroXI	GAANNNNTTC	2 cut(s)	316, 432
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	4 cut(s)	55, 94, 324, 419
MvaI	CCWGG	3 cut(s)	94, 324, 419
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	507, 566
NciI	CCSGG	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
NlaIII	CATG	6 cut(s)	218, 310, 451, 455, 478, 568
NlaIV	GGNNCC	5 cut(s)	102, 125, 245, 337, 358
NsiI	ATGCAT	1 cut(s)	453
NspI	RCATGY	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	261
PagI	TCATGA	1 cut(s)	474
PciI	ACATGT	1 cut(s)	214
PdmI	GAANNNNTTC	2 cut(s)	316, 432
PkrI	GCNGC	2 cut(s)	52, 295
PscI	ACATGT	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	537
Psp6I	CCWGG	3 cut(s)	92, 322, 417
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	3 cut(s)	92, 322, 417
PspN4I	GGNNCC	5 cut(s)	102, 125, 245, 337, 358
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	4 cut(s)	123, 133, 186, 335
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	537
SatI	GCNGC	2 cut(s)	51, 294
Sau3AI	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
Sau96I	GGNCC	1 cut(s)	357
ScrFI	CCNGG	4 cut(s)	55, 94, 324, 419
SduI	GDGCHC	3 cut(s)	262, 306, 537
SetI	ASST	6 cut(s)	9, 98, 201, 284, 499, 537
SfaNI	GCATC	2 cut(s)	480, 547
SfcI	CTRYAG	2 cut(s)	168, 550
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	357
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	4 cut(s)	128, 261, 297, 530
SmoI	CTYRAG	4 cut(s)	128, 261, 297, 530
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	2 cut(s)	501, 510
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	4 cut(s)	53, 92, 322, 417
StyI	CCWWGG	1 cut(s)	306
TaqI	TCGA	2 cut(s)	27, 262
TasI	AATT	1 cut(s)	349
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	2 cut(s)	50, 293
TspDTI	ATGAA	2 cut(s)	290, 491
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	357
XceI	RCATGY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	2 cut(s)	316, 432
XspI	CTAG	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.