Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

90712304 .. 90715749

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTTACGCAGCGATGAAACCCACCAAGCCTGGTCTCGAGGAGACACCGGAGCAGATCCAGAAGATCAGGATCACTCTCTCTTCCAAGAACGTCAAGAACCTCGAGAAAGTTTGTGCTGAATTGGTTCGCGGTGGCAAGGACAAGAGGCTCAGGGTGAAGGAACCAGTGAGGATGCCTACCAAGGTTCTGCACATTACAACCAGGAAGTCACCCTGTGGAGAAGGTACCAACACATGGGACAGATTTGAGTTGCGTTGGCACAAGCGTGTTATTAATCTCTTCAGCTCTCCTGATGTTGTGAAGCAGATCACCTCCATTACAATTGAACCTGGTGTCGAAGTGGAGGTCACAATTGCCAACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

122

Amino Acids

13.87

Weight (kDa)

9.78

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	24 - 118	4.2e-26	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccII	CGCG	1 cut(s)	132
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	2 cut(s)	52, 80
AcuI	CTGAAG	1 cut(s)	268
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	3 cut(s)	31, 203, 331
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	288
AluI	AGCT	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	38, 41
AlwI	GGATC	2 cut(s)	52, 80
Ama87I	CYCGRG	2 cut(s)	38, 104
ApeKI	GCWGC	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AseI	ATTAAT	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	126
Asp718I	GGTACC	1 cut(s)	227
AsuHPI	GGTGA	3 cut(s)	169, 204, 304
AvaI	CYCGRG	2 cut(s)	38, 104
BanI	GGYRCC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	23
BciT130I	CCWGG	3 cut(s)	33, 205, 333
BcoDI	GTCTC	2 cut(s)	38, 41
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	33, 205, 333
BmeT110I	CYCGRG	2 cut(s)	38, 104
BmiI	GGNNCC	2 cut(s)	165, 229
BmrFI	CCNGG	3 cut(s)	33, 205, 333
BmsI	GCATC	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	3 cut(s)	33, 205, 333
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	227
BsiHKCI	CYCGRG	2 cut(s)	38, 104
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	38, 41
BsmFI	GGGAC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	38, 104
Bsp143I	GATC	4 cut(s)	57, 66, 72, 309
BspACI	CCGC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	165, 229
BspPI	GGATC	2 cut(s)	52, 80
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	4 cut(s)	57, 66, 72, 309
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	3 cut(s)	33, 205, 333
Bst6I	CTCTTC	2 cut(s)	88, 287
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	4 cut(s)	60, 69, 75, 312
BstMAI	GTCTC	2 cut(s)	38, 41
BstMBI	GATC	4 cut(s)	57, 66, 72, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	3 cut(s)	33, 205, 333
BstSCI	CCNGG	3 cut(s)	31, 203, 331
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	174
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	4 cut(s)	5, 31, 151, 288
CviKI_1	RGCY	4 cut(s)	5, 31, 151, 288
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	4 cut(s)	59, 68, 74, 311
DpnII	GATC	4 cut(s)	57, 66, 72, 309
DraIII	CACNNNGTG	1 cut(s)	218
Eam1104I	CTCTTC	2 cut(s)	88, 287
EarI	CTCTTC	2 cut(s)	88, 287
Eco130I	CCWWGG	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	268
Eco88I	CYCGRG	2 cut(s)	38, 104
EcoRII	CCWGG	3 cut(s)	31, 203, 331
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	240
FaiI	YATR	1 cut(s)	238
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	1 cut(s)	240
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	3 cut(s)	169, 204, 304
Hpy188III	TCNNGA	6 cut(s)	38, 61, 70, 97, 106, 293
HpyAV	CCTTC	2 cut(s)	154, 218
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	240
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	57, 66, 72, 309
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	165
MabI	ACCWGGT	1 cut(s)	331
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	210, 349
MalI	GATC	4 cut(s)	59, 68, 74, 311
MboI	GATC	4 cut(s)	57, 66, 72, 309
MboII	GAAGA	3 cut(s)	75, 76, 274
MfeI	CAATTG	2 cut(s)	324, 354
MflI	RGATCY	1 cut(s)	57
MluCI	AATT	3 cut(s)	122, 324, 354
MnlI	CCTC	6 cut(s)	34, 113, 141, 165, 325, 340
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	3 cut(s)	33, 205, 333
MunI	CAATTG	2 cut(s)	324, 354
MvaI	CCWGG	3 cut(s)	33, 205, 333
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	57, 66, 72, 309
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	2 cut(s)	165, 229
NmuCI	GTSAC	2 cut(s)	210, 349
OliI	CACNNNNGTG	1 cut(s)	267
PaeR7I	CTCGAG	2 cut(s)	38, 104
PdmI	GAANNNNTTC	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	13
PshBI	ATTAAT	1 cut(s)	276
Psp6I	CCWGG	3 cut(s)	31, 203, 331
PspGI	CCWGG	3 cut(s)	31, 203, 331
PspN4I	GGNNCC	2 cut(s)	165, 229
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	57, 66, 72, 309
ScrFI	CCNGG	3 cut(s)	33, 205, 333
SetI	ASST	8 cut(s)	96, 105, 189, 229, 290, 317, 334, 351
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	165
Sfr274I	CTCGAG	2 cut(s)	38, 104
SlaI	CTCGAG	2 cut(s)	38, 104
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	38, 104
SmoI	CTYRAG	2 cut(s)	38, 104
Sse9I	AATT	3 cut(s)	122, 324, 354
SsiI	CCGC	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	31, 203, 331
StyI	CCWWGG	1 cut(s)	183
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	39, 105, 339
TasI	AATT	3 cut(s)	122, 324, 354
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	2 cut(s)	210, 349
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	2 cut(s)	210, 349
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	237
VspI	ATTAAT	1 cut(s)	276
XhoI	CTCGAG	2 cut(s)	38, 104
XmnI	GAANNNNTTC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.