Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Forward (+)

64839273 .. 64840336

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010263

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAAACCCACCAAGCCTAGTCTCGAGGAGACACAGGAGCAGATCCAGAAGATCAGGATCACTCTCTCTTCCAAGAACGACGAGAGGCTCAGGGTGAAGGGACCAGTAAGGATGCCTACCAAGGTTATGCACATTACCACCAGGAAGTCACCCTGTGGAGAAGGTACCAACACATGGGACAAATTTGAGTTGCGTGGGCACAAGCGTGTTATTGATGTCTTCAGCTCTCCTGATGTTGTGAAGCAGATCACCTCCATTACAATTGAACCTGGTGTCGAAGTGGAGGTCACAATTGCCAACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

102

Amino Acids

11.47

Weight (kDa)

9.46

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	27 - 97	1.9e-19	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	174
AclWI	GGATC	2 cut(s)	37, 65
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	205
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	140, 268
AleI	CACNNNNGTG	1 cut(s)	204
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	23, 26
AlwI	GGATC	2 cut(s)	37, 65
Ama87I	CYCGRG	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	182
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
Asp718I	GGTACC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	106, 141, 241
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	142, 270
BcoDI	GTCTC	2 cut(s)	23, 26
BfaI	CTAG	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	142, 270
Bme18I	GGWCC	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	102, 166
BmrFI	CCNGG	2 cut(s)	142, 270
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	211
Bpu10I	CCTNAGC	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	56
BseBI	CCWGG	2 cut(s)	142, 270
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	23
BslFI	GGGAC	2 cut(s)	114, 191
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	23, 26
BsmFI	GGGAC	2 cut(s)	114, 191
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	42, 51, 57, 246
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	102, 166
BspPI	GGATC	2 cut(s)	37, 65
BspT107I	GGYRCC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	4 cut(s)	42, 51, 57, 246
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	2 cut(s)	142, 270
Bst6I	CTCTTC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	4 cut(s)	45, 54, 60, 249
BstMAI	GTCTC	2 cut(s)	23, 26
BstMBI	GATC	4 cut(s)	42, 51, 57, 246
BstNI	CCWGG	2 cut(s)	142, 270
BstSCI	CCNGG	2 cut(s)	140, 268
BstSLI	GKGCMC	1 cut(s)	201
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	101
CsiI	ACCWGGT	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	3 cut(s)	16, 88, 225
CviKI_1	RGCY	3 cut(s)	16, 88, 225
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	4 cut(s)	44, 53, 59, 248
DpnII	GATC	4 cut(s)	42, 51, 57, 246
DraIII	CACNNNGTG	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	140, 268
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	177
FaiI	YATR	2 cut(s)	128, 175
FaqI	GGGAC	2 cut(s)	114, 191
FatI	CATG	1 cut(s)	173
FokI	GGATG	1 cut(s)	124
FspBI	CTAG	1 cut(s)	18
Hin1II	CATG	1 cut(s)	177
HphI	GGTGA	3 cut(s)	106, 141, 241
Hpy188III	TCNNGA	4 cut(s)	23, 46, 55, 230
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	91, 155
HpyCH4V	TGCA	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	177
KpnI	GGTACC	1 cut(s)	168
Kzo9I	GATC	4 cut(s)	42, 51, 57, 246
LmnI	GCTCC	1 cut(s)	37
LweI	GCATC	1 cut(s)	102
MabI	ACCWGGT	1 cut(s)	268
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	147, 286
MalI	GATC	4 cut(s)	44, 53, 59, 248
MboI	GATC	4 cut(s)	42, 51, 57, 246
MboII	GAAGA	3 cut(s)	60, 61, 211
MfeI	CAATTG	2 cut(s)	261, 291
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	3 cut(s)	182, 261, 291
MnlI	CCTC	4 cut(s)	19, 78, 262, 277
MslI	CAYNNNNRTG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	142, 270
MunI	CAATTG	2 cut(s)	261, 291
MvaI	CCWGG	2 cut(s)	142, 270
NdeII	GATC	4 cut(s)	42, 51, 57, 246
NlaIII	CATG	1 cut(s)	177
NlaIV	GGNNCC	2 cut(s)	102, 166
NmuCI	GTSAC	2 cut(s)	147, 286
OliI	CACNNNNGTG	1 cut(s)	204
PaeR7I	CTCGAG	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	140, 268
PspGI	CCWGG	2 cut(s)	140, 268
PspN4I	GGNNCC	2 cut(s)	102, 166
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	204
Sau3AI	GATC	4 cut(s)	42, 51, 57, 246
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	142, 270
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	6 cut(s)	126, 166, 227, 254, 271, 288
SexAI	ACCWGGT	1 cut(s)	268
SfaNI	GCATC	1 cut(s)	102
Sfr274I	CTCGAG	1 cut(s)	23
SinI	GGWCC	1 cut(s)	101
SlaI	CTCGAG	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	3 cut(s)	182, 261, 291
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	2 cut(s)	140, 268
StyI	CCWWGG	1 cut(s)	120
TaqI	TCGA	2 cut(s)	24, 276
TasI	AATT	3 cut(s)	182, 261, 291
TseFI	GTSAC	2 cut(s)	147, 286
Tsp45I	GTSAC	2 cut(s)	147, 286
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	1 cut(s)	182
XhoI	CTCGAG	1 cut(s)	23
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.