Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001225.1

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

59113 .. 60604

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001225.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ctgggagtaggaaactggaaaagtcgggcatggaggtcacgccaaagaagtcgtgtctcagccatagccatagcctccgccgatataacggcggttctgctctccagccaaagccaaagccaaagccgccaccagacccgtcttctttggcgcgcgggaggtcggactcatggcctctgttttcctcctctgcgtcctcgttttggtctcctccaggctcagctttctcatgattctagaataattggttttatagagatgaatcggttattgggtctggtattgaagcagaggaggttgaagccgctgctctggagctccctcaattctccgccgtcacctagagtaaaagcagagaagcttgaaaaccatggctttcgcagcgatgaaacccacaaagcctggtctcgaggagacacaggagcagatccacaagatcaggatcactctctcttccaagaacgtcaagaacctcgagaaagggtgaagggaccagtggggatgcctacgaaggttctgcacattaccaccaggaagtctccctgtggagaaggtactaatacatgggacagatttgtgttgcgtgtgcacaagcgtgttattgatctcttcagctctcctgatgttgtgaagcagatcacctccattacaattgaacctggtggaggtcacaattgccgaaagttgaagacttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

232

Amino Acids

26.28

Weight (kDa)

11.23

Isoelectric Point (pI)

62.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	153, 155
AciI	CCGC	6 cut(s)	78, 92, 127, 155, 305, 332
AclWI	GGATC	2 cut(s)	422, 450
AcuI	CTGAAG	1 cut(s)	595
AfaI	GTAC	1 cut(s)	556
AfiI	CCNNNNNNNGG	2 cut(s)	203, 665
AgsI	TTSAA	5 cut(s)	286, 301, 365, 656, 688
AjnI	CCWGG	4 cut(s)	213, 401, 530, 658
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AleI	CACNNNNGTG	1 cut(s)	594
AluBI	AGCT	4 cut(s)	223, 318, 361, 615
AluI	AGCT	4 cut(s)	223, 318, 361, 615
Alw21I	GWGCWC	2 cut(s)	320, 591
Alw26I	GTCTC	5 cut(s)	61, 212, 408, 411, 543
Alw44I	GTGCAC	1 cut(s)	587
AlwI	GGATC	2 cut(s)	422, 450
Ama87I	CYCGRG	2 cut(s)	408, 474
AoxI	GGCC	1 cut(s)	172
ApaLI	GTGCAC	1 cut(s)	587
ApeKI	GCWGC	2 cut(s)	307, 381
AspLEI	GCGC	2 cut(s)	153, 155
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	3 cut(s)	330, 496, 631
AvaI	CYCGRG	2 cut(s)	408, 474
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	591
BanII	GRGCYC	1 cut(s)	320
BbsI	GAAGAC	2 cut(s)	134, 695
Bbv12I	GWGCWC	2 cut(s)	320, 591
BbvI	GCAGC	2 cut(s)	294, 393
BceAI	ACGGC	2 cut(s)	105, 319
BcgI	CGANNNNNNTGC	2 cut(s)	499, 533
BciT130I	CCWGG	4 cut(s)	215, 403, 532, 660
BcoDI	GTCTC	5 cut(s)	61, 212, 408, 411, 543
BfaI	CTAG	2 cut(s)	237, 342
BisI	GCNGC	4 cut(s)	127, 305, 308, 382
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	4 cut(s)	128, 306, 309, 383
Bme1390I	CCNGG	4 cut(s)	215, 403, 532, 660
Bme18I	GGWCC	1 cut(s)	491
BmeT110I	CYCGRG	2 cut(s)	408, 474
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	4 cut(s)	215, 403, 532, 660
BmsI	GCATC	1 cut(s)	492
BpiI	GAAGAC	2 cut(s)	134, 695
BpmI	CTGGAG	3 cut(s)	88, 197, 334
Bpu1102I	GCTNAGC	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	441
BsaI	GGTCTC	2 cut(s)	212, 411
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 665
Bse1I	ACTGG	2 cut(s)	20, 494
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	4 cut(s)	215, 403, 532, 660
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	507
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	2 cut(s)	203, 665
BseMII	CTCAG	2 cut(s)	72, 233
BseNI	ACTGG	2 cut(s)	20, 494
BsePI	GCGCGC	1 cut(s)	151
BseRI	GAGGAG	4 cut(s)	177, 200, 307, 426
BseSI	GKGCMC	1 cut(s)	591
BseXI	GCAGC	2 cut(s)	294, 393
BsgI	GTGCAG	1 cut(s)	503
Bsh1236I	CGCG	2 cut(s)	153, 155
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	320, 591
BsiHKCI	CYCGRG	2 cut(s)	408, 474
BslFI	GGGAC	2 cut(s)	504, 581
BslI	CCNNNNNNNGG	2 cut(s)	203, 665
BsmAI	GTCTC	5 cut(s)	61, 212, 408, 411, 543
BsmFI	GGGAC	2 cut(s)	504, 581
BsnI	GGCC	1 cut(s)	174
Bso31I	GGTCTC	2 cut(s)	212, 411
BsoBI	CYCGRG	2 cut(s)	408, 474
Bsp1286I	GDGCHC	2 cut(s)	320, 591
Bsp143I	GATC	5 cut(s)	427, 436, 442, 604, 636
Bsp1720I	GCTNAGC	1 cut(s)	219
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	6 cut(s)	78, 92, 127, 155, 305, 332
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	2 cut(s)	71, 232
BspFNI	CGCG	2 cut(s)	153, 155
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	492
BspPI	GGATC	2 cut(s)	422, 450
BspTNI	GGTCTC	2 cut(s)	212, 411
BsrI	ACTGG	2 cut(s)	20, 494
BssECI	CCNNGG	1 cut(s)	370
BssHII	GCGCGC	1 cut(s)	151
BssMI	GATC	5 cut(s)	427, 436, 442, 604, 636
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	4 cut(s)	215, 403, 532, 660
Bst6I	CTCTTC	2 cut(s)	458, 614
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	58, 219
BstDSI	CCRYGG	1 cut(s)	370
BstENI	CCTNNNNNAGG	1 cut(s)	663
BstF5I	GGATG	1 cut(s)	507
BstFNI	CGCG	2 cut(s)	153, 155
BstHHI	GCGC	2 cut(s)	153, 155
BstKTI	GATC	5 cut(s)	430, 439, 445, 607, 639
BstMAI	GTCTC	5 cut(s)	61, 212, 408, 411, 543
BstMBI	GATC	5 cut(s)	427, 436, 442, 604, 636
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 381
BstNI	CCWGG	4 cut(s)	215, 403, 532, 660
BstSCI	CCNGG	4 cut(s)	213, 401, 530, 658
BstSLI	GKGCMC	1 cut(s)	591
BstUI	CGCG	2 cut(s)	153, 155
BstV1I	GCAGC	2 cut(s)	294, 393
BstV2I	GAAGAC	2 cut(s)	134, 695
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	370
BtgZI	GCGATG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	153
CciI	TCATGA	1 cut(s)	229
CfoI	GCGC	2 cut(s)	153, 155
Cfr13I	GGNCC	1 cut(s)	491
CseI	GACGC	1 cut(s)	182
CsiI	ACCWGGT	1 cut(s)	658
Csp6I	GTAC	1 cut(s)	555
CviAII	CATG	5 cut(s)	30, 170, 230, 371, 564
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	2 cut(s)	58, 219
DpnI	GATC	5 cut(s)	429, 438, 444, 606, 638
DpnII	GATC	5 cut(s)	427, 436, 442, 604, 636
Eam1104I	CTCTTC	2 cut(s)	458, 614
EarI	CTCTTC	2 cut(s)	458, 614
EciI	GGCGGA	2 cut(s)	67, 321
Ecl136II	GAGCTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	2 cut(s)	212, 411
Eco47I	GGWCC	1 cut(s)	491
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	595
Eco88I	CYCGRG	2 cut(s)	408, 474
EcoICRI	GAGCTC	1 cut(s)	318
EcoNI	CCTNNNNNAGG	1 cut(s)	663
EcoRII	CCWGG	4 cut(s)	213, 401, 530, 658
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	5 cut(s)	33, 173, 233, 374, 567
FaiI	YATR	9 cut(s)	31, 65, 71, 86, 171, 231, 254, 372, 565
FaqI	GGGAC	2 cut(s)	504, 581
FatI	CATG	5 cut(s)	29, 169, 229, 370, 563
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	4 cut(s)	127, 305, 308, 382
FokI	GGATG	1 cut(s)	514
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	4 cut(s)	127, 305, 308, 382
FspBI	CTAG	2 cut(s)	237, 342
GlaI	GCGC	2 cut(s)	152, 154
GluI	GCNGC	4 cut(s)	127, 305, 308, 382
GsuI	CTGGAG	3 cut(s)	88, 197, 334
HaeIII	GGCC	1 cut(s)	174
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	153, 155
Hin1II	CATG	5 cut(s)	33, 173, 233, 374, 567
Hin6I	GCGC	2 cut(s)	151, 153
HinP1I	GCGC	2 cut(s)	151, 153
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	3 cut(s)	166, 233, 262
HphI	GGTGA	3 cut(s)	330, 496, 631
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	8 cut(s)	230, 237, 313, 408, 440, 467, 476, 620
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	3 cut(s)	481, 505, 545
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	2 cut(s)	520, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 381
HpyF3I	CTNAG	2 cut(s)	58, 219
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	5 cut(s)	33, 173, 233, 374, 567
HspAI	GCGC	2 cut(s)	151, 153
Kzo9I	GATC	5 cut(s)	427, 436, 442, 604, 636
LmnI	GCTCC	3 cut(s)	315, 323, 422
Lsp1109I	GCAGC	2 cut(s)	294, 393
LweI	GCATC	1 cut(s)	492
MabI	ACCWGGT	1 cut(s)	658
MaeI	CTAG	2 cut(s)	237, 342
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	3 cut(s)	36, 336, 668
MalI	GATC	5 cut(s)	429, 438, 444, 606, 638
MboI	GATC	5 cut(s)	427, 436, 442, 604, 636
MboII	GAAGA	3 cut(s)	134, 445, 601
MfeI	CAATTG	2 cut(s)	651, 673
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	2 cut(s)	320, 591
MluCI	AATT	4 cut(s)	243, 325, 651, 673
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	307
MspR9I	CCNGG	4 cut(s)	215, 403, 532, 660
MunI	CAATTG	2 cut(s)	651, 673
MvaI	CCWGG	4 cut(s)	215, 403, 532, 660
MvnI	CGCG	2 cut(s)	153, 155
MwoI	GCNNNNNNNGC	2 cut(s)	126, 381
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	5 cut(s)	427, 436, 442, 604, 636
NlaIII	CATG	5 cut(s)	33, 173, 233, 374, 567
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	3 cut(s)	36, 336, 668
OliI	CACNNNNGTG	1 cut(s)	594
PaeR7I	CTCGAG	2 cut(s)	408, 474
PagI	TCATGA	1 cut(s)	229
PauI	GCGCGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	233, 262
PkrI	GCNGC	4 cut(s)	128, 306, 309, 383
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	320
Psp6I	CCWGG	4 cut(s)	213, 401, 530, 658
PspGI	CCWGG	4 cut(s)	213, 401, 530, 658
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	427
PteI	GCGCGC	1 cut(s)	151
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
RseI	CAYNNNNRTG	1 cut(s)	594
SacI	GAGCTC	1 cut(s)	320
SatI	GCNGC	4 cut(s)	127, 305, 308, 382
Sau3AI	GATC	5 cut(s)	427, 436, 442, 604, 636
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	4 cut(s)	215, 403, 532, 660
SduI	GDGCHC	2 cut(s)	320, 591
SexAI	ACCWGGT	1 cut(s)	658
SfaNI	GCATC	1 cut(s)	492
Sfr274I	CTCGAG	2 cut(s)	408, 474
SinI	GGWCC	1 cut(s)	491
SlaI	CTCGAG	2 cut(s)	408, 474
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	2 cut(s)	408, 474
SmoI	CTYRAG	2 cut(s)	408, 474
Sse9I	AATT	4 cut(s)	243, 325, 651, 673
SsiI	CCGC	6 cut(s)	78, 92, 127, 155, 305, 332
SspMI	CTAG	2 cut(s)	237, 342
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	4 cut(s)	213, 401, 530, 658
StyI	CCWWGG	1 cut(s)	370
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	409, 475
TasI	AATT	4 cut(s)	243, 325, 651, 673
TauI	GCSGC	2 cut(s)	129, 307
TfiI	GAWTC	2 cut(s)	233, 262
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	3 cut(s)	36, 336, 668
TseI	GCWGC	2 cut(s)	307, 381
Tsp45I	GTSAC	3 cut(s)	36, 336, 668
TspDTI	ATGAA	2 cut(s)	275, 402
TspRI	CASTG	1 cut(s)	501
VneI	GTGCAC	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	491
XagI	CCTNNNNNAGG	1 cut(s)	663
XbaI	TCTAGA	1 cut(s)	236
XhoI	CTCGAG	2 cut(s)	408, 474
XspI	CTAG	2 cut(s)	237, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.