Rorug06G0060300

40S ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
8074706 .. 8076078
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0060300.1

Sequence Viewer

Length: 1197 bp
ATGGCCAAGTACCCTTCAGCTAGTATTCTGTTTCTTGTGGCTCTAGTTTGTGTTTCAGGAGTTGCACAAACCATCGGTCTTGATATTCACAATAATATTTGCAAATCTCTGGTGAAGACACGAGGTTATATTTGCCAAGAACATCATGTAACAACTGAAGATGGTTACATTCTCAGGTTGCTAAGAATTCCATATGGACGGTTTGGTAGCAAATCGACCACGGATCAGAAGCCGCCTGTTTTATTACAACATGGGCTTCTAACGGATGCAGCATCATGGCTACTTAATCCACCGAATCAGGCTTTGGCGTTCATCTTAGCTGACAAAGGATTTGATGTATGGCTTGCTAATGCTCGAGGAACGGACTCCAGTCGTGGACACAAATCACTTAGTACTAATGATCCTGCTTATTGGGACTGGACATGGGAACAGTTGGCTGCTTATGATCTTCCTGCTTTGGTCAATTATGTGAACAACCAAACCGGAGAGAAGTCACACTATGTTGGCCATTCCTTAGGCACGTTGACAGTACTAGCTGCCTTGTCCCAACAAAAGCTGAGAAACTCAATAAGATCAGCTGCTTTGCTTAGCCCGATTGCTCATCTGGGTCAGATATCCACATCGCTTGTAAGAGTTGCTACTCTAACATTTTTGCCTGAGCAATTCTACATCTTTGGTCTCCGGGAATTTCCTCTGCTAGGGCGATTAGAACAAACTTTGCAAACCATTGTTTGTATACATCCGGGCGTGGACTGCTCCTACATTTTGACTGCTATAACAGGTCCAAAATGTTGTGTAAGTCCTTCAAGTTTAGATCTTTACTATGAACATACACCACAATCCACTGCCACAAAGAATATTGTACATTTGTCTCAGATGATCAGAAGTGGAACCATAAGAATGTTCGATTACACTCTTCCACACACAAATATGCAGCACTACAATCAGTTTAGTCCTCCGGTGTACAACATGGCAAACATTCCGAAAGACATTCCTCTTTTCCTCAGCTATGGAGGGAGAGATGCACTTTCAGACGTCAACGATGTGAAAGCTTTGCTTTATGACCTCAAAGATCATGACAAAGACAAGCTTGTGGAACAATACGTAGAGGAGTATGCTCATTTGGATTTCATTATGGGTTGGAATGCCAATAGAAAAGTATATGATCCTCTGATCACTTTCTTTGGGCAACATTGA

Protein Analysis

398

Amino Acids

44.59

Weight (kDa)

6.75

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 36 - 96 1.1e-19 Partial alpha/beta-hydrolase lipase region
Abhydrolase_1 PF00561 78 - 201 7.3e-13 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1038
AccI GTMKAC 1 cut(s) 736
AciI CCGC 1 cut(s) 233
AclWI GGATC 3 cut(s) 231, 395, 1160
AcoI YGGCCR 2 cut(s) 3, 505
AcsI RAATTY 2 cut(s) 186, 686
AcuI CTGAAG 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 1035
AfaI GTAC 5 cut(s) 11, 394, 531, 864, 965
AfiI CCNNNNNNNGG 1 cut(s) 698
AgsI TTSAA 1 cut(s) 807
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AluBI AGCT 8 cut(s) 20, 320, 536, 556, 578, 1008, 1052, 1090
AluI AGCT 8 cut(s) 20, 320, 536, 556, 578, 1008, 1052, 1090
Alw26I GTCTC 2 cut(s) 683, 876
AlwI GGATC 3 cut(s) 231, 395, 1160
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 2 cut(s) 3, 505
ApeKI GCWGC 5 cut(s) 269, 437, 536, 578, 934
ApoI RAATTY 2 cut(s) 186, 686
ArsI GACNNNNNNTTYG 4 cut(s) 61, 93, 314, 346
AspS9I GGNCC 1 cut(s) 782
AsuC2I CCSGG 2 cut(s) 683, 744
AsuHPI GGTGA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 1 cut(s) 782
AxyI CCTNAGG 1 cut(s) 514
BalI TGGCCA 2 cut(s) 5, 507
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 1004
BbvI GCAGC 5 cut(s) 281, 424, 523, 565, 946
BccI CCATC 2 cut(s) 80, 155
BclI TGATCA 2 cut(s) 879, 1173
BcnI CCSGG 2 cut(s) 683, 744
BcoDI GTCTC 2 cut(s) 683, 876
BfaI CTAG 4 cut(s) 21, 44, 533, 698
BglII AGATCT 1 cut(s) 814
BisI GCNGC 6 cut(s) 233, 270, 438, 537, 579, 935
BlpI GCTNAGC 1 cut(s) 587
BlsI GCNGC 6 cut(s) 234, 271, 439, 538, 580, 936
BmcAI AGTACT 2 cut(s) 394, 531
Bme1390I CCNGG 2 cut(s) 683, 744
Bme18I GGWCC 1 cut(s) 782
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 782
BmiI GGNNCC 1 cut(s) 892
BmrFI CCNGG 2 cut(s) 683, 744
BmsI GCATC 3 cut(s) 256, 281, 1012
BoxI GACNNNNGTC 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 352
Bpu10I CCTNAGC 2 cut(s) 657, 1004
Bpu1102I GCTNAGC 1 cut(s) 587
BpuMI CCSGG 2 cut(s) 683, 744
BsaAI YACGTR 1 cut(s) 1105
BsaHI GRCGYC 1 cut(s) 1035
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 2 cut(s) 482, 958
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse1I ACTGG 2 cut(s) 369, 422
Bse21I CCTNAGG 1 cut(s) 514
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 271, 739
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMII CTCAG 5 cut(s) 187, 548, 648, 887, 1018
BseNI ACTGG 2 cut(s) 369, 422
BseRI GAGGAG 1 cut(s) 1124
BseXI GCAGC 5 cut(s) 281, 424, 523, 565, 946
BshFI GGCC 2 cut(s) 5, 507
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 4 cut(s) 483, 682, 743, 959
BslFI GGGAC 2 cut(s) 428, 529
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 2 cut(s) 683, 876
BsmFI GGGAC 2 cut(s) 428, 529
BsmI GAATGC 1 cut(s) 1150
BsnI GGCC 2 cut(s) 5, 507
Bso31I GGTCTC 1 cut(s) 683
BsoBI CYCGRG 1 cut(s) 354
Bsp1407I TGTACA 2 cut(s) 862, 963
Bsp143I GATC 9 cut(s) 223, 400, 445, 572, 814, 879, 1072, 1165, 1173
Bsp1720I GCTNAGC 1 cut(s) 587
BspACI CCGC 1 cut(s) 233
BspANI GGCC 2 cut(s) 5, 507
BspCNI CTCAG 5 cut(s) 186, 549, 649, 886, 1017
BspHI TCATGA 1 cut(s) 1075
BspLI GGNNCC 1 cut(s) 892
BspPI GGATC 3 cut(s) 231, 395, 1160
BspTNI GGTCTC 1 cut(s) 683
BsrGI TGTACA 2 cut(s) 862, 963
BsrI ACTGG 2 cut(s) 369, 422
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 9 cut(s) 223, 400, 445, 572, 814, 879, 1072, 1165, 1173
BssNAI GTATAC 1 cut(s) 737
BssNI GRCGYC 1 cut(s) 1035
BssSI CACGAG 1 cut(s) 120
Bst1107I GTATAC 1 cut(s) 737
Bst2BI CACGAG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 201, 432, 529
Bst6I CTCTTC 1 cut(s) 921
BstACI GRCGYC 1 cut(s) 1035
BstAUI TGTACA 2 cut(s) 862, 963
BstBAI YACGTR 1 cut(s) 1105
BstC8I GCNNGC 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 696
BstF5I GGATG 2 cut(s) 271, 739
BstKTI GATC 9 cut(s) 226, 403, 448, 575, 817, 882, 1075, 1168, 1176
BstMAI GTCTC 2 cut(s) 683, 876
BstMBI GATC 9 cut(s) 223, 400, 445, 572, 814, 879, 1072, 1165, 1173
BstMWI GCNNNNNNNGC 1 cut(s) 753
BstPAI GACNNNNGTC 1 cut(s) 369
BstSCI CCNGG 2 cut(s) 681, 742
BstSNI TACGTA 1 cut(s) 1105
BstV1I GCAGC 5 cut(s) 281, 424, 523, 565, 946
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 814
BstYI RGATCY 1 cut(s) 814
BstZ17I GTATAC 1 cut(s) 737
Bsu36I CCTNAGG 1 cut(s) 514
BsuRI GGCC 2 cut(s) 5, 507
BtgI CCRYGG 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 606
BtsCI GGATG 2 cut(s) 271, 739
BtsI GCAGTG 1 cut(s) 843
BtsIMutI CAGTG 1 cut(s) 843
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 1075
Cfr13I GGNCC 1 cut(s) 782
Csp6I GTAC 5 cut(s) 10, 393, 530, 863, 964
CspCI CAANNNNNGTGG 2 cut(s) 607, 642
CviAII CATG 6 cut(s) 146, 251, 276, 423, 970, 1076
CviQI GTAC 5 cut(s) 10, 393, 530, 863, 964
DpnI GATC 9 cut(s) 225, 402, 447, 574, 816, 881, 1074, 1167, 1175
DpnII GATC 9 cut(s) 223, 400, 445, 572, 814, 879, 1072, 1165, 1173
EaeI YGGCCR 2 cut(s) 3, 505
Eam1104I CTCTTC 1 cut(s) 921
EarI CTCTTC 1 cut(s) 921
Eco105I TACGTA 1 cut(s) 1105
Eco31I GGTCTC 1 cut(s) 683
Eco32I GATATC 1 cut(s) 615
Eco47I GGWCC 1 cut(s) 782
Eco57I CTGAAG 1 cut(s) 177
Eco81I CCTNAGG 1 cut(s) 514
Eco88I CYCGRG 1 cut(s) 354
EcoNI CCTNNNNNAGG 1 cut(s) 696
EcoRI GAATTC 1 cut(s) 186
EcoRV GATATC 1 cut(s) 615
FaeI CATG 6 cut(s) 149, 254, 279, 426, 973, 1079
FalI AAGNNNNNCTT 4 cut(s) 1041, 1073, 1074, 1106
FaqI GGGAC 2 cut(s) 428, 529
FatI CATG 6 cut(s) 145, 250, 275, 422, 969, 1075
FauNDI CATATG 1 cut(s) 193
FbaI TGATCA 2 cut(s) 879, 1173
FblI GTMKAC 1 cut(s) 736
Fnu4HI GCNGC 6 cut(s) 233, 270, 438, 537, 579, 935
FokI GGATG 2 cut(s) 278, 726
Fsp4HI GCNGC 6 cut(s) 233, 270, 438, 537, 579, 935
FspBI CTAG 4 cut(s) 21, 44, 533, 698
GluI GCNGC 6 cut(s) 233, 270, 438, 537, 579, 935
GsuI CTGGAG 1 cut(s) 352
HaeIII GGCC 2 cut(s) 5, 507
HapII CCGG 4 cut(s) 483, 682, 743, 959
Hin1I GRCGYC 1 cut(s) 1035
Hin1II CATG 6 cut(s) 149, 254, 279, 426, 973, 1079
HincII GTYRAC 2 cut(s) 525, 1039
HindII GTYRAC 2 cut(s) 525, 1039
HindIII AAGCTT 2 cut(s) 1050, 1088
HinfI GANTC 2 cut(s) 295, 365
HpaII CCGG 4 cut(s) 483, 682, 743, 959
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 7 cut(s) 377, 472, 525, 737, 751, 964, 1039
Hpy188I TCNGA 7 cut(s) 228, 612, 876, 884, 984, 1033, 1173
Hpy188III TCNNGA 3 cut(s) 57, 80, 1076
Hpy8I GTNNAC 7 cut(s) 377, 472, 525, 737, 751, 964, 1039
HpyAV CCTTC 2 cut(s) 24, 813
HpyCH4III ACNGT 3 cut(s) 201, 432, 529
HpyCH4IV ACGT 3 cut(s) 521, 1035, 1104
HpyCH4V TGCA 6 cut(s) 65, 102, 269, 721, 934, 1025
HpyF10VI GCNNNNNNNGC 1 cut(s) 753
HpySE526I ACGT 3 cut(s) 521, 1035, 1104
Hsp92I GRCGYC 1 cut(s) 1035
Hsp92II CATG 6 cut(s) 149, 254, 279, 426, 973, 1079
Ksp22I TGATCA 2 cut(s) 879, 1173
Kzo9I GATC 9 cut(s) 223, 400, 445, 572, 814, 879, 1072, 1165, 1173
LmnI GCTCC 1 cut(s) 761
Lsp1109I GCAGC 5 cut(s) 281, 424, 523, 565, 946
LweI GCATC 3 cut(s) 256, 281, 1012
MaeI CTAG 4 cut(s) 21, 44, 533, 698
MaeII ACGT 3 cut(s) 521, 1035, 1104
MaeIII GTNAC 3 cut(s) 148, 164, 492
MalI GATC 9 cut(s) 225, 402, 447, 574, 816, 881, 1074, 1167, 1175
MboI GATC 9 cut(s) 223, 400, 445, 572, 814, 879, 1072, 1165, 1173
MboII GAAGA 4 cut(s) 127, 170, 440, 908
MflI RGATCY 1 cut(s) 814
MlsI TGGCCA 2 cut(s) 5, 507
MluCI AATT 4 cut(s) 186, 463, 662, 686
MluNI TGGCCA 2 cut(s) 5, 507
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 1121
Mox20I TGGCCA 2 cut(s) 5, 507
MscI TGGCCA 2 cut(s) 5, 507
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 2 cut(s) 899, 929
Msp20I TGGCCA 2 cut(s) 5, 507
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 4 cut(s) 483, 682, 743, 959
MspR9I CCNGG 2 cut(s) 683, 744
Mva1269I GAATGC 1 cut(s) 1150
MwoI GCNNNNNNNGC 1 cut(s) 753
NciI CCSGG 2 cut(s) 683, 744
NdeI CATATG 1 cut(s) 193
NdeII GATC 9 cut(s) 223, 400, 445, 572, 814, 879, 1072, 1165, 1173
NlaIII CATG 6 cut(s) 149, 254, 279, 426, 973, 1079
NlaIV GGNNCC 1 cut(s) 892
NmuCI GTSAC 1 cut(s) 492
PaeR7I CTCGAG 1 cut(s) 354
PagI TCATGA 1 cut(s) 1075
PctI GAATGC 1 cut(s) 1150
PfeI GAWTC 1 cut(s) 295
PfoI TCCNGGA 1 cut(s) 681
PkrI GCNGC 6 cut(s) 234, 271, 439, 538, 580, 936
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 1105
PshAI GACNNNNGTC 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 892
PspPI GGNCC 1 cut(s) 782
PspXI VCTCGAGB 1 cut(s) 354
PsuI RGATCY 1 cut(s) 814
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 5 cut(s) 11, 394, 531, 864, 965
RsaNI GTAC 5 cut(s) 10, 393, 530, 863, 964
RseI CAYNNNNRTG 2 cut(s) 899, 929
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 6 cut(s) 233, 270, 438, 537, 579, 935
Sau3AI GATC 9 cut(s) 223, 400, 445, 572, 814, 879, 1072, 1165, 1173
Sau96I GGNCC 1 cut(s) 782
ScaI AGTACT 2 cut(s) 394, 531
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 683, 744
SfaNI GCATC 3 cut(s) 256, 281, 1012
Sfr274I CTCGAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 782
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 2 cut(s) 899, 929
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
SnaBI TACGTA 1 cut(s) 1105
Sse9I AATT 4 cut(s) 186, 463, 662, 686
SsiI CCGC 1 cut(s) 233
SspI AATATT 2 cut(s) 97, 859
SspMI CTAG 4 cut(s) 21, 44, 533, 698
StyD4I CCNGG 2 cut(s) 681, 742
TaaI ACNGT 3 cut(s) 201, 432, 529
TaiI ACGT 3 cut(s) 524, 1038, 1107
TaqI TCGA 3 cut(s) 215, 355, 906
TaqII GACCGA 1 cut(s) 65
TasI AATT 4 cut(s) 186, 463, 662, 686
TatI WGTACW 4 cut(s) 392, 529, 862, 963
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 850
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 5 cut(s) 269, 437, 536, 578, 934
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 3 cut(s) 301, 840, 1120
TspGWI ACGGA 3 cut(s) 236, 278, 377
TspRI CASTG 1 cut(s) 850
VpaK11BI GGWCC 1 cut(s) 782
XagI CCTNNNNNAGG 1 cut(s) 696
XapI RAATTY 2 cut(s) 186, 686
XhoI CTCGAG 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 736
XspI CTAG 4 cut(s) 21, 44, 533, 698
ZraI GACGTC 1 cut(s) 1036
ZrmI AGTACT 2 cut(s) 394, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.