40S ribosomal protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1038 |
| AccI | GTMKAC | 1 cut(s) | 736 |
| AciI | CCGC | 1 cut(s) | 233 |
| AclWI | GGATC | 3 cut(s) | 231, 395, 1160 |
| AcoI | YGGCCR | 2 cut(s) | 3, 505 |
| AcsI | RAATTY | 2 cut(s) | 186, 686 |
| AcuI | CTGAAG | 1 cut(s) | 177 |
| AcyI | GRCGYC | 1 cut(s) | 1035 |
| AfaI | GTAC | 5 cut(s) | 11, 394, 531, 864, 965 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 698 |
| AgsI | TTSAA | 1 cut(s) | 807 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 287, 319 |
| AluBI | AGCT | 8 cut(s) | 20, 320, 536, 556, 578, 1008, 1052, 1090 |
| AluI | AGCT | 8 cut(s) | 20, 320, 536, 556, 578, 1008, 1052, 1090 |
| Alw26I | GTCTC | 2 cut(s) | 683, 876 |
| AlwI | GGATC | 3 cut(s) | 231, 395, 1160 |
| Ama87I | CYCGRG | 1 cut(s) | 354 |
| AoxI | GGCC | 2 cut(s) | 3, 505 |
| ApeKI | GCWGC | 5 cut(s) | 269, 437, 536, 578, 934 |
| ApoI | RAATTY | 2 cut(s) | 186, 686 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 61, 93, 314, 346 |
| AspS9I | GGNCC | 1 cut(s) | 782 |
| AsuC2I | CCSGG | 2 cut(s) | 683, 744 |
| AsuHPI | GGTGA | 1 cut(s) | 124 |
| AvaI | CYCGRG | 1 cut(s) | 354 |
| AvaII | GGWCC | 1 cut(s) | 782 |
| AxyI | CCTNAGG | 1 cut(s) | 514 |
| BalI | TGGCCA | 2 cut(s) | 5, 507 |
| BauI | CACGAG | 1 cut(s) | 120 |
| BbsI | GAAGAC | 1 cut(s) | 122 |
| BbvCI | CCTCAGC | 1 cut(s) | 1004 |
| BbvI | GCAGC | 5 cut(s) | 281, 424, 523, 565, 946 |
| BccI | CCATC | 2 cut(s) | 80, 155 |
| BclI | TGATCA | 2 cut(s) | 879, 1173 |
| BcnI | CCSGG | 2 cut(s) | 683, 744 |
| BcoDI | GTCTC | 2 cut(s) | 683, 876 |
| BfaI | CTAG | 4 cut(s) | 21, 44, 533, 698 |
| BglII | AGATCT | 1 cut(s) | 814 |
| BisI | GCNGC | 6 cut(s) | 233, 270, 438, 537, 579, 935 |
| BlpI | GCTNAGC | 1 cut(s) | 587 |
| BlsI | GCNGC | 6 cut(s) | 234, 271, 439, 538, 580, 936 |
| BmcAI | AGTACT | 2 cut(s) | 394, 531 |
| Bme1390I | CCNGG | 2 cut(s) | 683, 744 |
| Bme18I | GGWCC | 1 cut(s) | 782 |
| BmeT110I | CYCGRG | 1 cut(s) | 354 |
| BmgT120I | GGNCC | 1 cut(s) | 782 |
| BmiI | GGNNCC | 1 cut(s) | 892 |
| BmrFI | CCNGG | 2 cut(s) | 683, 744 |
| BmsI | GCATC | 3 cut(s) | 256, 281, 1012 |
| BoxI | GACNNNNGTC | 1 cut(s) | 369 |
| BpiI | GAAGAC | 1 cut(s) | 122 |
| BpmI | CTGGAG | 1 cut(s) | 352 |
| Bpu10I | CCTNAGC | 2 cut(s) | 657, 1004 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 587 |
| BpuMI | CCSGG | 2 cut(s) | 683, 744 |
| BsaAI | YACGTR | 1 cut(s) | 1105 |
| BsaHI | GRCGYC | 1 cut(s) | 1035 |
| BsaI | GGTCTC | 1 cut(s) | 683 |
| BsaJI | CCNNGG | 1 cut(s) | 219 |
| BsaWI | WCCGGW | 2 cut(s) | 482, 958 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 698 |
| Bse1I | ACTGG | 2 cut(s) | 369, 422 |
| Bse21I | CCTNAGG | 1 cut(s) | 514 |
| BseDI | CCNNGG | 1 cut(s) | 219 |
| BseGI | GGATG | 2 cut(s) | 271, 739 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 698 |
| BseMII | CTCAG | 5 cut(s) | 187, 548, 648, 887, 1018 |
| BseNI | ACTGG | 2 cut(s) | 369, 422 |
| BseRI | GAGGAG | 1 cut(s) | 1124 |
| BseXI | GCAGC | 5 cut(s) | 281, 424, 523, 565, 946 |
| BshFI | GGCC | 2 cut(s) | 5, 507 |
| BsiHKCI | CYCGRG | 1 cut(s) | 354 |
| BsiSI | CCGG | 4 cut(s) | 483, 682, 743, 959 |
| BslFI | GGGAC | 2 cut(s) | 428, 529 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 698 |
| BsmAI | GTCTC | 2 cut(s) | 683, 876 |
| BsmFI | GGGAC | 2 cut(s) | 428, 529 |
| BsmI | GAATGC | 1 cut(s) | 1150 |
| BsnI | GGCC | 2 cut(s) | 5, 507 |
| Bso31I | GGTCTC | 1 cut(s) | 683 |
| BsoBI | CYCGRG | 1 cut(s) | 354 |
| Bsp1407I | TGTACA | 2 cut(s) | 862, 963 |
| Bsp143I | GATC | 9 cut(s) | 223, 400, 445, 572, 814, 879, 1072, 1165, 1173 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 587 |
| BspACI | CCGC | 1 cut(s) | 233 |
| BspANI | GGCC | 2 cut(s) | 5, 507 |
| BspCNI | CTCAG | 5 cut(s) | 186, 549, 649, 886, 1017 |
| BspHI | TCATGA | 1 cut(s) | 1075 |
| BspLI | GGNNCC | 1 cut(s) | 892 |
| BspPI | GGATC | 3 cut(s) | 231, 395, 1160 |
| BspTNI | GGTCTC | 1 cut(s) | 683 |
| BsrGI | TGTACA | 2 cut(s) | 862, 963 |
| BsrI | ACTGG | 2 cut(s) | 369, 422 |
| BssECI | CCNNGG | 1 cut(s) | 219 |
| BssMI | GATC | 9 cut(s) | 223, 400, 445, 572, 814, 879, 1072, 1165, 1173 |
| BssNAI | GTATAC | 1 cut(s) | 737 |
| BssNI | GRCGYC | 1 cut(s) | 1035 |
| BssSI | CACGAG | 1 cut(s) | 120 |
| Bst1107I | GTATAC | 1 cut(s) | 737 |
| Bst2BI | CACGAG | 1 cut(s) | 120 |
| Bst4CI | ACNGT | 3 cut(s) | 201, 432, 529 |
| Bst6I | CTCTTC | 1 cut(s) | 921 |
| BstACI | GRCGYC | 1 cut(s) | 1035 |
| BstAUI | TGTACA | 2 cut(s) | 862, 963 |
| BstBAI | YACGTR | 1 cut(s) | 1105 |
| BstC8I | GCNNGC | 1 cut(s) | 345 |
| BstDSI | CCRYGG | 1 cut(s) | 219 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 696 |
| BstF5I | GGATG | 2 cut(s) | 271, 739 |
| BstKTI | GATC | 9 cut(s) | 226, 403, 448, 575, 817, 882, 1075, 1168, 1176 |
| BstMAI | GTCTC | 2 cut(s) | 683, 876 |
| BstMBI | GATC | 9 cut(s) | 223, 400, 445, 572, 814, 879, 1072, 1165, 1173 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 753 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 369 |
| BstSCI | CCNGG | 2 cut(s) | 681, 742 |
| BstSNI | TACGTA | 1 cut(s) | 1105 |
| BstV1I | GCAGC | 5 cut(s) | 281, 424, 523, 565, 946 |
| BstV2I | GAAGAC | 1 cut(s) | 122 |
| BstX2I | RGATCY | 1 cut(s) | 814 |
| BstYI | RGATCY | 1 cut(s) | 814 |
| BstZ17I | GTATAC | 1 cut(s) | 737 |
| Bsu36I | CCTNAGG | 1 cut(s) | 514 |
| BsuRI | GGCC | 2 cut(s) | 5, 507 |
| BtgI | CCRYGG | 1 cut(s) | 219 |
| BtgZI | GCGATG | 1 cut(s) | 606 |
| BtsCI | GGATG | 2 cut(s) | 271, 739 |
| BtsI | GCAGTG | 1 cut(s) | 843 |
| BtsIMutI | CAGTG | 1 cut(s) | 843 |
| Cac8I | GCNNGC | 1 cut(s) | 345 |
| CciI | TCATGA | 1 cut(s) | 1075 |
| Cfr13I | GGNCC | 1 cut(s) | 782 |
| Csp6I | GTAC | 5 cut(s) | 10, 393, 530, 863, 964 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 607, 642 |
| CviAII | CATG | 6 cut(s) | 146, 251, 276, 423, 970, 1076 |
| CviQI | GTAC | 5 cut(s) | 10, 393, 530, 863, 964 |
| DpnI | GATC | 9 cut(s) | 225, 402, 447, 574, 816, 881, 1074, 1167, 1175 |
| DpnII | GATC | 9 cut(s) | 223, 400, 445, 572, 814, 879, 1072, 1165, 1173 |
| EaeI | YGGCCR | 2 cut(s) | 3, 505 |
| Eam1104I | CTCTTC | 1 cut(s) | 921 |
| EarI | CTCTTC | 1 cut(s) | 921 |
| Eco105I | TACGTA | 1 cut(s) | 1105 |
| Eco31I | GGTCTC | 1 cut(s) | 683 |
| Eco32I | GATATC | 1 cut(s) | 615 |
| Eco47I | GGWCC | 1 cut(s) | 782 |
| Eco57I | CTGAAG | 1 cut(s) | 177 |
| Eco81I | CCTNAGG | 1 cut(s) | 514 |
| Eco88I | CYCGRG | 1 cut(s) | 354 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 696 |
| EcoRI | GAATTC | 1 cut(s) | 186 |
| EcoRV | GATATC | 1 cut(s) | 615 |
| FaeI | CATG | 6 cut(s) | 149, 254, 279, 426, 973, 1079 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1041, 1073, 1074, 1106 |
| FaqI | GGGAC | 2 cut(s) | 428, 529 |
| FatI | CATG | 6 cut(s) | 145, 250, 275, 422, 969, 1075 |
| FauNDI | CATATG | 1 cut(s) | 193 |
| FbaI | TGATCA | 2 cut(s) | 879, 1173 |
| FblI | GTMKAC | 1 cut(s) | 736 |
| Fnu4HI | GCNGC | 6 cut(s) | 233, 270, 438, 537, 579, 935 |
| FokI | GGATG | 2 cut(s) | 278, 726 |
| Fsp4HI | GCNGC | 6 cut(s) | 233, 270, 438, 537, 579, 935 |
| FspBI | CTAG | 4 cut(s) | 21, 44, 533, 698 |
| GluI | GCNGC | 6 cut(s) | 233, 270, 438, 537, 579, 935 |
| GsuI | CTGGAG | 1 cut(s) | 352 |
| HaeIII | GGCC | 2 cut(s) | 5, 507 |
| HapII | CCGG | 4 cut(s) | 483, 682, 743, 959 |
| Hin1I | GRCGYC | 1 cut(s) | 1035 |
| Hin1II | CATG | 6 cut(s) | 149, 254, 279, 426, 973, 1079 |
| HincII | GTYRAC | 2 cut(s) | 525, 1039 |
| HindII | GTYRAC | 2 cut(s) | 525, 1039 |
| HindIII | AAGCTT | 2 cut(s) | 1050, 1088 |
| HinfI | GANTC | 2 cut(s) | 295, 365 |
| HpaII | CCGG | 4 cut(s) | 483, 682, 743, 959 |
| HphI | GGTGA | 1 cut(s) | 124 |
| Hpy166II | GTNNAC | 7 cut(s) | 377, 472, 525, 737, 751, 964, 1039 |
| Hpy188I | TCNGA | 7 cut(s) | 228, 612, 876, 884, 984, 1033, 1173 |
| Hpy188III | TCNNGA | 3 cut(s) | 57, 80, 1076 |
| Hpy8I | GTNNAC | 7 cut(s) | 377, 472, 525, 737, 751, 964, 1039 |
| HpyAV | CCTTC | 2 cut(s) | 24, 813 |
| HpyCH4III | ACNGT | 3 cut(s) | 201, 432, 529 |
| HpyCH4IV | ACGT | 3 cut(s) | 521, 1035, 1104 |
| HpyCH4V | TGCA | 6 cut(s) | 65, 102, 269, 721, 934, 1025 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 753 |
| HpySE526I | ACGT | 3 cut(s) | 521, 1035, 1104 |
| Hsp92I | GRCGYC | 1 cut(s) | 1035 |
| Hsp92II | CATG | 6 cut(s) | 149, 254, 279, 426, 973, 1079 |
| Ksp22I | TGATCA | 2 cut(s) | 879, 1173 |
| Kzo9I | GATC | 9 cut(s) | 223, 400, 445, 572, 814, 879, 1072, 1165, 1173 |
| LmnI | GCTCC | 1 cut(s) | 761 |
| Lsp1109I | GCAGC | 5 cut(s) | 281, 424, 523, 565, 946 |
| LweI | GCATC | 3 cut(s) | 256, 281, 1012 |
| MaeI | CTAG | 4 cut(s) | 21, 44, 533, 698 |
| MaeII | ACGT | 3 cut(s) | 521, 1035, 1104 |
| MaeIII | GTNAC | 3 cut(s) | 148, 164, 492 |
| MalI | GATC | 9 cut(s) | 225, 402, 447, 574, 816, 881, 1074, 1167, 1175 |
| MboI | GATC | 9 cut(s) | 223, 400, 445, 572, 814, 879, 1072, 1165, 1173 |
| MboII | GAAGA | 4 cut(s) | 127, 170, 440, 908 |
| MflI | RGATCY | 1 cut(s) | 814 |
| MlsI | TGGCCA | 2 cut(s) | 5, 507 |
| MluCI | AATT | 4 cut(s) | 186, 463, 662, 686 |
| MluNI | TGGCCA | 2 cut(s) | 5, 507 |
| MlyI | GAGTC | 1 cut(s) | 359 |
| MmeI | TCCRAC | 1 cut(s) | 1121 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 507 |
| MscI | TGGCCA | 2 cut(s) | 5, 507 |
| MseI | TTAA | 1 cut(s) | 285 |
| MslI | CAYNNNNRTG | 2 cut(s) | 899, 929 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 507 |
| MspA1I | CMGCKG | 1 cut(s) | 578 |
| MspI | CCGG | 4 cut(s) | 483, 682, 743, 959 |
| MspR9I | CCNGG | 2 cut(s) | 683, 744 |
| Mva1269I | GAATGC | 1 cut(s) | 1150 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 753 |
| NciI | CCSGG | 2 cut(s) | 683, 744 |
| NdeI | CATATG | 1 cut(s) | 193 |
| NdeII | GATC | 9 cut(s) | 223, 400, 445, 572, 814, 879, 1072, 1165, 1173 |
| NlaIII | CATG | 6 cut(s) | 149, 254, 279, 426, 973, 1079 |
| NlaIV | GGNNCC | 1 cut(s) | 892 |
| NmuCI | GTSAC | 1 cut(s) | 492 |
| PaeR7I | CTCGAG | 1 cut(s) | 354 |
| PagI | TCATGA | 1 cut(s) | 1075 |
| PctI | GAATGC | 1 cut(s) | 1150 |
| PfeI | GAWTC | 1 cut(s) | 295 |
| PfoI | TCCNGGA | 1 cut(s) | 681 |
| PkrI | GCNGC | 6 cut(s) | 234, 271, 439, 538, 580, 936 |
| PleI | GAGTC | 1 cut(s) | 359 |
| PpsI | GAGTC | 1 cut(s) | 359 |
| Ppu21I | YACGTR | 1 cut(s) | 1105 |
| PshAI | GACNNNNGTC | 1 cut(s) | 369 |
| PspN4I | GGNNCC | 1 cut(s) | 892 |
| PspPI | GGNCC | 1 cut(s) | 782 |
| PspXI | VCTCGAGB | 1 cut(s) | 354 |
| PsuI | RGATCY | 1 cut(s) | 814 |
| PvuII | CAGCTG | 1 cut(s) | 578 |
| RsaI | GTAC | 5 cut(s) | 11, 394, 531, 864, 965 |
| RsaNI | GTAC | 5 cut(s) | 10, 393, 530, 863, 964 |
| RseI | CAYNNNNRTG | 2 cut(s) | 899, 929 |
| SaqAI | TTAA | 1 cut(s) | 285 |
| SatI | GCNGC | 6 cut(s) | 233, 270, 438, 537, 579, 935 |
| Sau3AI | GATC | 9 cut(s) | 223, 400, 445, 572, 814, 879, 1072, 1165, 1173 |
| Sau96I | GGNCC | 1 cut(s) | 782 |
| ScaI | AGTACT | 2 cut(s) | 394, 531 |
| SchI | GAGTC | 1 cut(s) | 359 |
| ScrFI | CCNGG | 2 cut(s) | 683, 744 |
| SfaNI | GCATC | 3 cut(s) | 256, 281, 1012 |
| Sfr274I | CTCGAG | 1 cut(s) | 354 |
| SinI | GGWCC | 1 cut(s) | 782 |
| SlaI | CTCGAG | 1 cut(s) | 354 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 899, 929 |
| SmlI | CTYRAG | 1 cut(s) | 354 |
| SmoI | CTYRAG | 1 cut(s) | 354 |
| SnaBI | TACGTA | 1 cut(s) | 1105 |
| Sse9I | AATT | 4 cut(s) | 186, 463, 662, 686 |
| SsiI | CCGC | 1 cut(s) | 233 |
| SspI | AATATT | 2 cut(s) | 97, 859 |
| SspMI | CTAG | 4 cut(s) | 21, 44, 533, 698 |
| StyD4I | CCNGG | 2 cut(s) | 681, 742 |
| TaaI | ACNGT | 3 cut(s) | 201, 432, 529 |
| TaiI | ACGT | 3 cut(s) | 524, 1038, 1107 |
| TaqI | TCGA | 3 cut(s) | 215, 355, 906 |
| TaqII | GACCGA | 1 cut(s) | 65 |
| TasI | AATT | 4 cut(s) | 186, 463, 662, 686 |
| TatI | WGTACW | 4 cut(s) | 392, 529, 862, 963 |
| TauI | GCSGC | 1 cut(s) | 235 |
| TfiI | GAWTC | 1 cut(s) | 295 |
| Tru1I | TTAA | 1 cut(s) | 285 |
| Tru9I | TTAA | 1 cut(s) | 285 |
| TscAI | CASTG | 1 cut(s) | 850 |
| TseFI | GTSAC | 1 cut(s) | 492 |
| TseI | GCWGC | 5 cut(s) | 269, 437, 536, 578, 934 |
| Tsp45I | GTSAC | 1 cut(s) | 492 |
| TspDTI | ATGAA | 3 cut(s) | 301, 840, 1120 |
| TspGWI | ACGGA | 3 cut(s) | 236, 278, 377 |
| TspRI | CASTG | 1 cut(s) | 850 |
| VpaK11BI | GGWCC | 1 cut(s) | 782 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 696 |
| XapI | RAATTY | 2 cut(s) | 186, 686 |
| XhoI | CTCGAG | 1 cut(s) | 354 |
| XmiI | GTMKAC | 1 cut(s) | 736 |
| XspI | CTAG | 4 cut(s) | 21, 44, 533, 698 |
| ZraI | GACGTC | 1 cut(s) | 1036 |
| ZrmI | AGTACT | 2 cut(s) | 394, 531 |