Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

20842401 .. 20844064

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28020.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGTACGCAGCGATGAAGCCAACCAAGCCAGGTCTTGAGGAGCCACAGGAGCAGATCCACAAGATCAGGATCACCCTCTCTTCCAAGAACGTCAAGAACTTGGAAAAAGTTTGTGCTGATTTGGTTCGCGGTGCTAAGGATAAGGGGCTCAGGGTGAAGGGTCCAGTGAGAATGCCTACCAAGGTTCTGCACATTACCACCAGGAAGTCTCCCTGTGGAGAAGGTACTAACACATGGGACAGATTTGAGTTGCGTGTGCACAAGCGTGTTATTGACCTGTTCAGCTCACCTGATGTTGTGAAGCAGATCACCTCCATTACTATTGAACCTGGTGTCGAAGTGGAGGTCACAATTGCTGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

123

Amino Acids

13.64

Weight (kDa)

9.51

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	24 - 75	3.6e-14	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	2 cut(s)	52, 80
AfaI	GTAC	2 cut(s)	8, 229
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	3 cut(s)	31, 203, 331
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	288
AluI	AGCT	1 cut(s)	288
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	216
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	2 cut(s)	52, 80
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	4 cut(s)	67, 169, 282, 304
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	23
BciT130I	CCWGG	3 cut(s)	33, 205, 333
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	216
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	33, 205, 333
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	45, 165
BmrFI	CCNGG	3 cut(s)	33, 205, 333
Bpu10I	CCTNAGC	2 cut(s)	138, 152
BpuEI	CTTGAG	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	3 cut(s)	33, 205, 333
BseDI	CCNNGG	1 cut(s)	183
BseJI	GATNNNNATC	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	264
BsiWI	CGTACG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	180
Bsp1286I	GDGCHC	2 cut(s)	153, 264
Bsp143I	GATC	5 cut(s)	57, 66, 72, 309, 361
BspACI	CCGC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	45, 165
BspPI	GGATC	2 cut(s)	52, 80
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	5 cut(s)	57, 66, 72, 309, 361
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	3 cut(s)	33, 205, 333
Bst6I	CTCTTC	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	138, 152
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	5 cut(s)	60, 69, 75, 312, 364
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	5 cut(s)	57, 66, 72, 309, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 28, 52
BstNI	CCWGG	3 cut(s)	33, 205, 333
BstSCI	CCNGG	3 cut(s)	31, 203, 331
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	7, 228
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	5 cut(s)	22, 31, 46, 151, 288
CviKI_1	RGCY	5 cut(s)	22, 31, 46, 151, 288
CviQI	GTAC	2 cut(s)	7, 228
DdeI	CTNAG	2 cut(s)	138, 152
DpnI	GATC	5 cut(s)	59, 68, 74, 311, 363
DpnII	GATC	5 cut(s)	57, 66, 72, 309, 361
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	164
EcoRII	CCWGG	3 cut(s)	31, 203, 331
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	240
FaiI	YATR	1 cut(s)	238
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	1 cut(s)	236
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	1 cut(s)	12
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	240
HphI	GGTGA	4 cut(s)	67, 169, 282, 304
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188III	TCNNGA	3 cut(s)	38, 70, 97
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	154, 218
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	193, 262
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 28, 52
HpyF3I	CTNAG	2 cut(s)	138, 152
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	5 cut(s)	57, 66, 72, 309, 361
LmnI	GCTCC	2 cut(s)	43, 52
Lsp1109I	GCAGC	1 cut(s)	23
MabI	ACCWGGT	1 cut(s)	331
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	5 cut(s)	59, 68, 74, 311, 363
MboI	GATC	5 cut(s)	57, 66, 72, 309, 361
MboII	GAAGA	1 cut(s)	75
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	153, 264
MluCI	AATT	1 cut(s)	354
MnlI	CCTC	4 cut(s)	34, 89, 325, 340
MslI	CAYNNNNRTG	1 cut(s)	267
MspR9I	CCNGG	3 cut(s)	33, 205, 333
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	3 cut(s)	33, 205, 333
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	11, 28, 52
NdeII	GATC	5 cut(s)	57, 66, 72, 309, 361
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	2 cut(s)	45, 165
NmuCI	GTSAC	1 cut(s)	349
OliI	CACNNNNGTG	1 cut(s)	267
PctI	GAATGC	1 cut(s)	180
Pfl23II	CGTACG	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	13
Psp6I	CCWGG	3 cut(s)	31, 203, 331
PspGI	CCWGG	3 cut(s)	31, 203, 331
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	45, 165
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	8, 229
RsaNI	GTAC	2 cut(s)	7, 228
RseI	CAYNNNNRTG	1 cut(s)	267
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	5 cut(s)	57, 66, 72, 309, 361
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	33, 205, 333
SduI	GDGCHC	2 cut(s)	153, 264
SexAI	ACCWGGT	1 cut(s)	331
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	31, 203, 331
StyI	CCWWGG	1 cut(s)	183
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	339
TasI	AATT	1 cut(s)	354
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	174
VneI	GTGCAC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.