Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Forward (+)

33451334 .. 33453003

Gene Structure 1670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTTACGCAGGGATGAAACCCACCAAGCCTGGTCTCGAGGAGACACAGGAGCAGATCCAGAAGATCAGGATCACTCTCTCTTCCAAGAACGTCAAGAACCTCGAGAAAGTTTGTGCTGATTTGGTTCGCAGTGCCAAGGACAAGAGGCTCAGGGTGAAGGGACCAGGGAGGATGCCTACCAAGGTTCTGCACATTACCACCAGGAAGTCACCCTGTGGAGAAGGTACCAACACTCACAGATTTGAGTTGCGTGTGCACAAGCGTGTTATTGATCTCTTCAGCTCTCCTGATGTTGTGAAGCAGATCACCTCCATTACAATTGAACCAGGTGTCGAAGTAGAGGTCACAATTGCCAACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

121

Amino Acids

13.55

Weight (kDa)

9.89

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	24 - 117	2.2e-25	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	52, 80
AcuI	CTGAAG	1 cut(s)	265
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	326
AjnI	CCWGG	4 cut(s)	31, 166, 203, 328
AleI	CACNNNNGTG	1 cut(s)	264
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	38, 41
Alw44I	GTGCAC	1 cut(s)	257
AlwI	GGATC	2 cut(s)	52, 80
Ama87I	CYCGRG	2 cut(s)	38, 104
ApaLI	GTGCAC	1 cut(s)	257
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
Asp718I	GGTACC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	169, 204, 301
AvaI	CYCGRG	2 cut(s)	38, 104
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	261
BciT130I	CCWGG	4 cut(s)	33, 168, 205, 330
BcoDI	GTCTC	2 cut(s)	38, 41
Bme1390I	CCNGG	4 cut(s)	33, 168, 205, 330
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	2 cut(s)	38, 104
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	165, 229
BmrFI	CCNGG	4 cut(s)	33, 168, 205, 330
BmsI	GCATC	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	138, 167, 183
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	4 cut(s)	33, 168, 205, 330
BseDI	CCNNGG	3 cut(s)	138, 167, 183
BseGI	GGATG	2 cut(s)	21, 180
BseJI	GATNNNNATC	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	261
BsgI	GTGCAG	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	2 cut(s)	38, 104
BslFI	GGGAC	1 cut(s)	177
BsmAI	GTCTC	2 cut(s)	38, 41
BsmFI	GGGAC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	38, 104
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	5 cut(s)	57, 66, 72, 274, 306
BspCNI	CTCAG	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	165, 229
BspPI	GGATC	2 cut(s)	52, 80
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	138, 167, 183
BssMI	GATC	5 cut(s)	57, 66, 72, 274, 306
BssT1I	CCWWGG	2 cut(s)	138, 183
Bst2UI	CCWGG	4 cut(s)	33, 168, 205, 330
Bst6I	CTCTTC	2 cut(s)	88, 284
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	2 cut(s)	21, 180
BstKTI	GATC	5 cut(s)	60, 69, 75, 277, 309
BstMAI	GTCTC	2 cut(s)	38, 41
BstMBI	GATC	5 cut(s)	57, 66, 72, 274, 306
BstNI	CCWGG	4 cut(s)	33, 168, 205, 330
BstSCI	CCNGG	4 cut(s)	31, 166, 203, 328
BstSLI	GKGCMC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	21, 180
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	228
CviJI	RGCY	4 cut(s)	5, 31, 151, 285
CviKI_1	RGCY	4 cut(s)	5, 31, 151, 285
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	5 cut(s)	59, 68, 74, 276, 308
DpnII	GATC	5 cut(s)	57, 66, 72, 274, 306
DraIII	CACNNNGTG	1 cut(s)	218
Eam1104I	CTCTTC	2 cut(s)	88, 284
EarI	CTCTTC	2 cut(s)	88, 284
Eco130I	CCWWGG	2 cut(s)	138, 183
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	265
Eco88I	CYCGRG	2 cut(s)	38, 104
EcoRII	CCWGG	4 cut(s)	31, 166, 203, 328
EcoT14I	CCWWGG	2 cut(s)	138, 183
ErhI	CCWWGG	2 cut(s)	138, 183
FaqI	GGGAC	1 cut(s)	177
FokI	GGATG	2 cut(s)	28, 187
HphI	GGTGA	3 cut(s)	169, 204, 301
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188III	TCNNGA	6 cut(s)	38, 61, 70, 97, 106, 290
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	154, 218
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	193, 259
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	93
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	57, 66, 72, 274, 306
LmnI	GCTCC	1 cut(s)	52
LweI	GCATC	1 cut(s)	165
MabI	ACCWGGT	1 cut(s)	328
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	210, 346
MalI	GATC	5 cut(s)	59, 68, 74, 276, 308
MboI	GATC	5 cut(s)	57, 66, 72, 274, 306
MboII	GAAGA	3 cut(s)	75, 76, 271
MfeI	CAATTG	2 cut(s)	321, 351
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	2 cut(s)	321, 351
MnlI	CCTC	6 cut(s)	34, 113, 141, 165, 322, 337
MslI	CAYNNNNRTG	1 cut(s)	264
MspR9I	CCNGG	4 cut(s)	33, 168, 205, 330
MunI	CAATTG	2 cut(s)	321, 351
MvaI	CCWGG	4 cut(s)	33, 168, 205, 330
NdeII	GATC	5 cut(s)	57, 66, 72, 274, 306
NlaIV	GGNNCC	2 cut(s)	165, 229
NmuCI	GTSAC	2 cut(s)	210, 346
OliI	CACNNNNGTG	1 cut(s)	264
PaeR7I	CTCGAG	2 cut(s)	38, 104
Psp6I	CCWGG	4 cut(s)	31, 166, 203, 328
PspGI	CCWGG	4 cut(s)	31, 166, 203, 328
PspN4I	GGNNCC	2 cut(s)	165, 229
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	264
Sau3AI	GATC	5 cut(s)	57, 66, 72, 274, 306
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	4 cut(s)	33, 168, 205, 330
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	8 cut(s)	96, 105, 189, 229, 287, 314, 334, 348
SexAI	ACCWGGT	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	165
Sfr274I	CTCGAG	2 cut(s)	38, 104
SinI	GGWCC	1 cut(s)	164
SlaI	CTCGAG	2 cut(s)	38, 104
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	38, 104
SmoI	CTYRAG	2 cut(s)	38, 104
Sse9I	AATT	2 cut(s)	321, 351
StyD4I	CCNGG	4 cut(s)	31, 166, 203, 328
StyI	CCWWGG	2 cut(s)	138, 183
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	39, 105, 336
TasI	AATT	2 cut(s)	321, 351
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	2 cut(s)	210, 346
Tsp45I	GTSAC	2 cut(s)	210, 346
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	139
VneI	GTGCAC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	164
XhoI	CTCGAG	2 cut(s)	38, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.