Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Forward (+)

28171876 .. 28172988

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018308

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTTTCGCAGCGATGAAACCCACAAAGCCTGGTCTCGAGGAGACACAGGAGCAGATCCAGAAGATCAGGATCACTCTCTCTTCCAAGAACGTCAAGAACCTGGAGAAAGTTTGTGCTGATTTGGTTCACGGTGCCAAGGACAAGAGGCTCAGGGTGAAGGCACCAGTGAGGATGCCTACCAAGGTTCTGCACATTACCACCAGGAAGTCACCCTGTGGAGAAGGTACCAACACCTGGGACAGATTTGAGTTGCGTGTGCACAATTGTGTTATTGATCTCTTCAGCTCTCCTTATGTTGTGAAGCAGATCACCTCCATTACATTTGAACCAGGTCGAAGTGGAGGTCACAATTGCCGACCAATAAACATCTCGCTTCAAGATTTGGTCAAGTTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

134

Amino Acids

14.97

Weight (kDa)

9.81

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	24 - 108	8.2e-22	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	3 cut(s)	134, 163, 227
AccB7I	CCANNNNNTGG	1 cut(s)	237
AclWI	GGATC	2 cut(s)	52, 80
AcuI	CTGAAG	1 cut(s)	268
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	329, 380
AjnI	CCWGG	5 cut(s)	31, 102, 203, 236, 331
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	288
AluI	AGCT	1 cut(s)	288
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	38, 41
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	2 cut(s)	52, 80
Ama87I	CYCGRG	1 cut(s)	38
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
Asp718I	GGTACC	1 cut(s)	227
AsuHPI	GGTGA	3 cut(s)	169, 204, 304
AvaI	CYCGRG	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	264
BanI	GGYRCC	3 cut(s)	134, 163, 227
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	23
BciT130I	CCWGG	5 cut(s)	33, 104, 205, 238, 333
BcoDI	GTCTC	2 cut(s)	38, 41
BfaI	CTAG	1 cut(s)	400
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	5 cut(s)	33, 104, 205, 238, 333
BmeT110I	CYCGRG	1 cut(s)	38
BmiI	GGNNCC	3 cut(s)	136, 165, 229
BmrFI	CCNGG	5 cut(s)	33, 104, 205, 238, 333
BmsI	GCATC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	138, 183, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	5 cut(s)	33, 104, 205, 238, 333
BseDI	CCNNGG	3 cut(s)	138, 183, 237
BseGI	GGATG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	176
BshNI	GGYRCC	3 cut(s)	134, 163, 227
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	38, 41
BsmFI	GGGAC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	5 cut(s)	57, 66, 72, 277, 309
BspCNI	CTCAG	1 cut(s)	165
BspLI	GGNNCC	3 cut(s)	136, 165, 229
BspPI	GGATC	2 cut(s)	52, 80
BspT107I	GGYRCC	3 cut(s)	134, 163, 227
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	3 cut(s)	138, 183, 237
BssMI	GATC	5 cut(s)	57, 66, 72, 277, 309
BssT1I	CCWWGG	2 cut(s)	138, 183
Bst2UI	CCWGG	5 cut(s)	33, 104, 205, 238, 333
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	2 cut(s)	88, 287
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	5 cut(s)	60, 69, 75, 280, 312
BstMAI	GTCTC	2 cut(s)	38, 41
BstMBI	GATC	5 cut(s)	57, 66, 72, 277, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	5 cut(s)	33, 104, 205, 238, 333
BstSCI	CCNGG	5 cut(s)	31, 102, 203, 236, 331
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	174
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	228
CviJI	RGCY	4 cut(s)	5, 31, 151, 288
CviKI_1	RGCY	4 cut(s)	5, 31, 151, 288
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	5 cut(s)	59, 68, 74, 279, 311
DpnII	GATC	5 cut(s)	57, 66, 72, 277, 309
DraIII	CACNNNGTG	1 cut(s)	218
Eam1104I	CTCTTC	2 cut(s)	88, 287
EarI	CTCTTC	2 cut(s)	88, 287
Eco130I	CCWWGG	2 cut(s)	138, 183
Eco31I	GGTCTC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	38
EcoRII	CCWGG	5 cut(s)	31, 102, 203, 236, 331
EcoT14I	CCWWGG	2 cut(s)	138, 183
ErhI	CCWWGG	2 cut(s)	138, 183
FaiI	YATR	1 cut(s)	297
FaqI	GGGAC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	400
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	125
HphI	GGTGA	3 cut(s)	169, 204, 304
Hpy166II	GTNNAC	2 cut(s)	130, 262
Hpy188III	TCNNGA	5 cut(s)	38, 61, 70, 97, 380
Hpy8I	GTNNAC	2 cut(s)	130, 262
HpyAV	CCTTC	2 cut(s)	154, 218
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	193, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	93
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	57, 66, 72, 277, 309
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	165
MabI	ACCWGGT	1 cut(s)	331
MaeI	CTAG	1 cut(s)	400
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	210, 347
MalI	GATC	5 cut(s)	59, 68, 74, 279, 311
MboI	GATC	5 cut(s)	57, 66, 72, 277, 309
MboII	GAAGA	3 cut(s)	75, 76, 274
MfeI	CAATTG	2 cut(s)	265, 352
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	2 cut(s)	265, 352
MnlI	CCTC	5 cut(s)	34, 141, 165, 325, 338
MslI	CAYNNNNRTG	1 cut(s)	267
MspR9I	CCNGG	5 cut(s)	33, 104, 205, 238, 333
MunI	CAATTG	2 cut(s)	265, 352
MvaI	CCWGG	5 cut(s)	33, 104, 205, 238, 333
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	5 cut(s)	57, 66, 72, 277, 309
NlaIV	GGNNCC	3 cut(s)	136, 165, 229
NmuCI	GTSAC	2 cut(s)	210, 347
OliI	CACNNNNGTG	1 cut(s)	267
PaeR7I	CTCGAG	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	13
Psp6I	CCWGG	5 cut(s)	31, 102, 203, 236, 331
PspGI	CCWGG	5 cut(s)	31, 102, 203, 236, 331
PspN4I	GGNNCC	3 cut(s)	136, 165, 229
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	267
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	5 cut(s)	57, 66, 72, 277, 309
ScrFI	CCNGG	5 cut(s)	33, 104, 205, 238, 333
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	9 cut(s)	96, 105, 189, 229, 239, 290, 317, 337, 349
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	38
SlaI	CTCGAG	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	265, 352
SspMI	CTAG	1 cut(s)	400
StyD4I	CCNGG	5 cut(s)	31, 102, 203, 236, 331
StyI	CCWWGG	2 cut(s)	138, 183
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	39, 337
TasI	AATT	2 cut(s)	265, 352
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	2 cut(s)	210, 347
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	2 cut(s)	210, 347
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	237
VneI	GTGCAC	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	38
XspI	CTAG	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.