40S ribosomal protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NADPH_Ox | PF08414 | 146 - 248 | 3.8e-37 | Respiratory burst NADPH oxidase |
| EF-hand_7 | PF13499 | 248 - 314 | 3.7e-06 | EF-hand domain pair |
| Ferric_reduct | PF01794 | 418 - 565 | 1.4e-11 | Ferric reductase like transmembrane component |
| FAD_binding_8 | PF08022 | 609 - 725 | 1.2e-37 | FAD-binding domain |
| NAD_binding_6 | PF08030 | 731 - 919 | 6.3e-49 | Ferric reductase NAD binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 53 |
| Acc36I | ACCTGC | 1 cut(s) | 364 |
| Acc65I | GGTACC | 1 cut(s) | 1065 |
| AccB1I | GGYRCC | 3 cut(s) | 425, 1065, 2722 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 120, 519, 1478, 1587 |
| AccBSI | CCGCTC | 1 cut(s) | 1911 |
| AccI | GTMKAC | 3 cut(s) | 1155, 1683, 2664 |
| AccII | CGCG | 4 cut(s) | 32, 2623, 2625, 2678 |
| AccIII | TCCGGA | 1 cut(s) | 277 |
| AclI | AACGTT | 1 cut(s) | 538 |
| AclWI | GGATC | 3 cut(s) | 137, 269, 282 |
| AcoI | YGGCCR | 5 cut(s) | 231, 265, 294, 430, 1578 |
| AcsI | RAATTY | 4 cut(s) | 707, 1244, 2272, 2806 |
| AcuI | CTGAAG | 4 cut(s) | 410, 1049, 1646, 2558 |
| AcyI | GRCGYC | 4 cut(s) | 326, 426, 780, 2656 |
| AfeI | AGCGCT | 1 cut(s) | 885 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 16, 114, 120, 519, 1317, 1478, 1587 |
| AflIII | ACRYGT | 3 cut(s) | 1415, 1878, 1920 |
| AgeI | ACCGGT | 1 cut(s) | 1270 |
| AhlI | ACTAGT | 1 cut(s) | 155 |
| AjiI | CACGTC | 1 cut(s) | 1416 |
| AjnI | CCWGG | 3 cut(s) | 113, 449, 2549 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 602, 634, 833, 865 |
| Alw21I | GWGCWC | 5 cut(s) | 107, 240, 972, 1408, 2170 |
| Alw26I | GTCTC | 7 cut(s) | 345, 382, 655, 830, 1144, 1229, 2617 |
| Alw44I | GTGCAC | 2 cut(s) | 236, 968 |
| AlwI | GGATC | 3 cut(s) | 137, 269, 282 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1015, 1027 |
| Ama87I | CYCGRG | 2 cut(s) | 100, 2021 |
| Aor13HI | TCCGGA | 1 cut(s) | 277 |
| Aor51HI | AGCGCT | 1 cut(s) | 885 |
| ApaLI | GTGCAC | 2 cut(s) | 236, 968 |
| ApeKI | GCWGC | 5 cut(s) | 881, 955, 2038, 2203, 2680 |
| ApoI | RAATTY | 4 cut(s) | 707, 1244, 2272, 2806 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 719, 751 |
| AsiGI | ACCGGT | 1 cut(s) | 1270 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 80, 539 |
| Asp718I | GGTACC | 1 cut(s) | 1065 |
| AspLEI | GCGC | 6 cut(s) | 428, 886, 1937, 2625, 2680, 2758 |
| AspS9I | GGNCC | 8 cut(s) | 89, 447, 453, 522, 2156, 2226, 2400, 2775 |
| AsuC2I | CCSGG | 3 cut(s) | 647, 1857, 1986 |
| AsuHPI | GGTGA | 4 cut(s) | 605, 689, 1974, 2555 |
| AsuII | TTCGAA | 2 cut(s) | 1953, 2014 |
| AvaI | CYCGRG | 2 cut(s) | 100, 2021 |
| AvaII | GGWCC | 6 cut(s) | 89, 447, 453, 2156, 2400, 2775 |
| BaeGI | GKGCMC | 4 cut(s) | 240, 652, 972, 2725 |
| BalI | TGGCCA | 3 cut(s) | 267, 296, 1580 |
| BamHI | GGATCC | 1 cut(s) | 274 |
| BanI | GGYRCC | 3 cut(s) | 425, 1065, 2722 |
| BanII | GRGCYC | 2 cut(s) | 107, 2444 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1064, 1096 |
| BauI | CACGAG | 3 cut(s) | 14, 269, 2428 |
| BbsI | GAAGAC | 2 cut(s) | 308, 1079 |
| Bbv12I | GWGCWC | 5 cut(s) | 107, 240, 972, 1408, 2170 |
| BbvCI | CCTCAGC | 1 cut(s) | 2744 |
| BbvI | GCAGC | 5 cut(s) | 893, 942, 2050, 2190, 2667 |
| BccI | CCATC | 7 cut(s) | 14, 692, 779, 1056, 1192, 1674, 2479 |
| BceAI | ACGGC | 3 cut(s) | 218, 386, 532 |
| BciT130I | CCWGG | 3 cut(s) | 115, 451, 2551 |
| BclI | TGATCA | 1 cut(s) | 1797 |
| BcnI | CCSGG | 3 cut(s) | 647, 1857, 1986 |
| BcoDI | GTCTC | 7 cut(s) | 345, 382, 655, 830, 1144, 1229, 2617 |
| BcuI | ACTAGT | 1 cut(s) | 155 |
| BfaI | CTAG | 7 cut(s) | 95, 156, 165, 744, 2294, 2324, 2812 |
| BfmI | CTRYAG | 1 cut(s) | 1563 |
| BfoI | RGCGCY | 3 cut(s) | 429, 887, 2759 |
| BfuAI | ACCTGC | 1 cut(s) | 364 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 293 |
| BisI | GCNGC | 9 cut(s) | 252, 882, 956, 1622, 1889, 1938, 2039, 2204, 2681 |
| BlsI | GCNGC | 9 cut(s) | 253, 883, 957, 1623, 1890, 1939, 2040, 2205, 2682 |
| BmcAI | AGTACT | 2 cut(s) | 163, 1082 |
| Bme1390I | CCNGG | 6 cut(s) | 115, 451, 647, 1857, 1986, 2551 |
| Bme18I | GGWCC | 6 cut(s) | 89, 447, 453, 2156, 2400, 2775 |
| BmeT110I | CYCGRG | 2 cut(s) | 100, 2021 |
| BmgBI | CACGTC | 1 cut(s) | 1416 |
| BmgT120I | GGNCC | 8 cut(s) | 89, 447, 453, 522, 2156, 2226, 2400, 2775 |
| BmiI | GGNNCC | 7 cut(s) | 276, 427, 749, 1067, 2227, 2402, 2724 |
| BmrFI | CCNGG | 6 cut(s) | 115, 451, 647, 1857, 1986, 2551 |
| BmrI | ACTGGG | 1 cut(s) | 1545 |
| BmsI | GCATC | 5 cut(s) | 1110, 1827, 1969, 2536, 2692 |
| BmuI | ACTGGG | 1 cut(s) | 1545 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2624 |
| BpiI | GAAGAC | 2 cut(s) | 308, 1079 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 26, 58 |
| BpmI | CTGGAG | 2 cut(s) | 97, 734 |
| Bpu10I | CCTNAGC | 3 cut(s) | 870, 2000, 2744 |
| Bpu14I | TTCGAA | 2 cut(s) | 1953, 2014 |
| BpuEI | CTTGAG | 3 cut(s) | 467, 1823, 2027 |
| BpuMI | CCSGG | 3 cut(s) | 647, 1857, 1986 |
| Bsa29I | ATCGAT | 1 cut(s) | 977 |
| BsaAI | YACGTR | 1 cut(s) | 196 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1341, 2147 |
| BsaHI | GRCGYC | 4 cut(s) | 326, 426, 780, 2656 |
| BsaI | GGTCTC | 1 cut(s) | 382 |
| BsaJI | CCNNGG | 9 cut(s) | 30, 51, 114, 498, 621, 1427, 1586, 2215, 2235 |
| BsaWI | WCCGGW | 5 cut(s) | 277, 333, 444, 964, 1270 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 32, 62, 833, 863, 2762, 2792 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 16, 114, 120, 519, 1317, 1478, 1587 |
| Bse118I | RCCGGY | 5 cut(s) | 428, 632, 1270, 1768, 2725 |
| Bse1I | ACTGG | 4 cut(s) | 1508, 1540, 1826, 2526 |
| Bse3DI | GCAATG | 1 cut(s) | 1362 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1341, 2147 |
| BseAI | TCCGGA | 1 cut(s) | 277 |
| BseBI | CCWGG | 3 cut(s) | 115, 451, 2551 |
| BseCI | ATCGAT | 1 cut(s) | 977 |
| BseDI | CCNNGG | 9 cut(s) | 30, 51, 114, 498, 621, 1427, 1586, 2215, 2235 |
| BseGI | GGATG | 5 cut(s) | 25, 213, 1758, 1960, 2686 |
| BseJI | GATNNNNATC | 2 cut(s) | 1341, 2147 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 16, 114, 120, 519, 1317, 1478, 1587 |
| BseMI | GCAATG | 1 cut(s) | 1362 |
| BseNI | ACTGG | 4 cut(s) | 1508, 1540, 1826, 2526 |
| BseRI | GAGGAG | 6 cut(s) | 97, 100, 139, 335, 563, 1242 |
| BseSI | GKGCMC | 4 cut(s) | 240, 652, 972, 2725 |
| BseX3I | CGGCCG | 1 cut(s) | 430 |
| BseXI | GCAGC | 5 cut(s) | 893, 942, 2050, 2190, 2667 |
| BseYI | CCCAGC | 2 cut(s) | 519, 2129 |
| BsgI | GTGCAG | 2 cut(s) | 447, 1859 |
| Bsh1236I | CGCG | 4 cut(s) | 32, 2623, 2625, 2678 |
| Bsh1285I | CGRYCG | 3 cut(s) | 338, 433, 445 |
| BshNI | GGYRCC | 3 cut(s) | 425, 1065, 2722 |
| BshTI | ACCGGT | 1 cut(s) | 1270 |
| BshVI | ATCGAT | 1 cut(s) | 977 |
| BsiEI | CGRYCG | 3 cut(s) | 338, 433, 445 |
| BsiHKAI | GWGCWC | 5 cut(s) | 107, 240, 972, 1408, 2170 |
| BsiHKCI | CYCGRG | 2 cut(s) | 100, 2021 |
| BslFI | GGGAC | 2 cut(s) | 1313, 2632 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 16, 114, 120, 519, 1317, 1478, 1587 |
| BsmAI | GTCTC | 7 cut(s) | 345, 382, 655, 830, 1144, 1229, 2617 |
| BsmBI | CGTCTC | 2 cut(s) | 345, 655 |
| BsmFI | GGGAC | 2 cut(s) | 1313, 2632 |
| BsmI | GAATGC | 2 cut(s) | 602, 1568 |
| Bso31I | GGTCTC | 1 cut(s) | 382 |
| BsoBI | CYCGRG | 2 cut(s) | 100, 2021 |
| Bsp119I | TTCGAA | 2 cut(s) | 1953, 2014 |
| Bsp1286I | GDGCHC | 8 cut(s) | 107, 240, 652, 972, 1408, 2170, 2444, 2725 |
| Bsp13I | TCCGGA | 1 cut(s) | 277 |
| Bsp143I | GATC | 5 cut(s) | 129, 274, 978, 1797, 1811 |
| Bsp19I | CCATGG | 1 cut(s) | 2235 |
| BspDI | ATCGAT | 1 cut(s) | 977 |
| BspEI | TCCGGA | 1 cut(s) | 277 |
| BspFNI | CGCG | 4 cut(s) | 32, 2623, 2625, 2678 |
| BspLI | GGNNCC | 7 cut(s) | 276, 427, 749, 1067, 2227, 2402, 2724 |
| BspMI | ACCTGC | 1 cut(s) | 364 |
| BspPI | GGATC | 3 cut(s) | 137, 269, 282 |
| BspQI | GCTCTTC | 2 cut(s) | 470, 891 |
| BspT104I | TTCGAA | 2 cut(s) | 1953, 2014 |
| BspT107I | GGYRCC | 3 cut(s) | 425, 1065, 2722 |
| BspTNI | GGTCTC | 1 cut(s) | 382 |
| BsrBI | CCGCTC | 1 cut(s) | 1911 |
| BsrDI | GCAATG | 1 cut(s) | 1362 |
| BsrFI | RCCGGY | 5 cut(s) | 428, 632, 1270, 1768, 2725 |
| BsrI | ACTGG | 4 cut(s) | 1508, 1540, 1826, 2526 |
| BssAI | RCCGGY | 5 cut(s) | 428, 632, 1270, 1768, 2725 |
| BssECI | CCNNGG | 9 cut(s) | 30, 51, 114, 498, 621, 1427, 1586, 2215, 2235 |
| BssMI | GATC | 5 cut(s) | 129, 274, 978, 1797, 1811 |
| BssNAI | GTATAC | 1 cut(s) | 1156 |
| BssNI | GRCGYC | 4 cut(s) | 326, 426, 780, 2656 |
| BssSI | CACGAG | 3 cut(s) | 14, 269, 2428 |
| BssT1I | CCWWGG | 4 cut(s) | 498, 621, 1586, 2235 |
| Bst1107I | GTATAC | 1 cut(s) | 1156 |
| Bst2BI | CACGAG | 3 cut(s) | 14, 269, 2428 |
| Bst2UI | CCWGG | 3 cut(s) | 115, 451, 2551 |
| Bst4CI | ACNGT | 8 cut(s) | 242, 529, 985, 1455, 2050, 2156, 2522, 2717 |
| Bst6I | CTCTTC | 7 cut(s) | 143, 470, 586, 593, 891, 1695, 1984 |
| BstACI | GRCGYC | 4 cut(s) | 326, 426, 780, 2656 |
| BstBAI | YACGTR | 1 cut(s) | 196 |
| BstBI | TTCGAA | 2 cut(s) | 1953, 2014 |
| BstC8I | GCNNGC | 8 cut(s) | 285, 294, 430, 634, 638, 960, 1869, 1913 |
| BstDSI | CCRYGG | 2 cut(s) | 30, 2235 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 112 |
| BstF5I | GGATG | 5 cut(s) | 25, 213, 1758, 1960, 2686 |
| BstFNI | CGCG | 4 cut(s) | 32, 2623, 2625, 2678 |
| BstH2I | RGCGCY | 3 cut(s) | 429, 887, 2759 |
| BstHHI | GCGC | 6 cut(s) | 428, 886, 1937, 2625, 2680, 2758 |
| BstKTI | GATC | 5 cut(s) | 132, 277, 981, 1800, 1814 |
| BstMAI | GTCTC | 7 cut(s) | 345, 382, 655, 830, 1144, 1229, 2617 |
| BstMBI | GATC | 5 cut(s) | 129, 274, 978, 1797, 1811 |
| BstMCI | CGRYCG | 3 cut(s) | 338, 433, 445 |
| BstNI | CCWGG | 3 cut(s) | 115, 451, 2551 |
| BstNSI | RCATGY | 3 cut(s) | 1882, 1924, 2113 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2624 |
| BstSCI | CCNGG | 6 cut(s) | 113, 449, 645, 1855, 1984, 2549 |
| BstSFI | CTRYAG | 1 cut(s) | 1563 |
| BstSLI | GKGCMC | 4 cut(s) | 240, 652, 972, 2725 |
| BstUI | CGCG | 4 cut(s) | 32, 2623, 2625, 2678 |
| BstV1I | GCAGC | 5 cut(s) | 893, 942, 2050, 2190, 2667 |
| BstV2I | GAAGAC | 2 cut(s) | 308, 1079 |
| BstX2I | RGATCY | 1 cut(s) | 274 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1956, 2236 |
| BstYI | RGATCY | 1 cut(s) | 274 |
| BstZ17I | GTATAC | 1 cut(s) | 1156 |
| BstZI | CGGCCG | 1 cut(s) | 430 |
| Bsu15I | ATCGAT | 1 cut(s) | 977 |
| BsuTUI | ATCGAT | 1 cut(s) | 977 |
| BtgI | CCRYGG | 2 cut(s) | 30, 2235 |
| BtrI | CACGTC | 1 cut(s) | 1416 |
| BtsCI | GGATG | 5 cut(s) | 25, 213, 1758, 1960, 2686 |
| BtsI | GCAGTG | 3 cut(s) | 459, 1770, 1871 |
| BtsIMutI | CAGTG | 9 cut(s) | 247, 459, 835, 1256, 1770, 1833, 1871, 2533, 2558 |
| BveI | ACCTGC | 1 cut(s) | 364 |
| Cac8I | GCNNGC | 8 cut(s) | 285, 294, 430, 634, 638, 960, 1869, 1913 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1015, 1027 |
| CfoI | GCGC | 6 cut(s) | 428, 886, 1937, 2625, 2680, 2758 |
| Cfr10I | RCCGGY | 5 cut(s) | 428, 632, 1270, 1768, 2725 |
| Cfr13I | GGNCC | 8 cut(s) | 89, 447, 453, 522, 2156, 2226, 2400, 2775 |
| Cfr42I | CCGCGG | 1 cut(s) | 33 |
| ClaI | ATCGAT | 1 cut(s) | 977 |
| CseI | GACGC | 9 cut(s) | 315, 370, 383, 672, 788, 1993, 2614, 2629, 2645 |
| CsiI | ACCWGGT | 1 cut(s) | 449 |
| CspAI | ACCGGT | 1 cut(s) | 1270 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 655, 690 |
| DinI | GGCGCC | 1 cut(s) | 427 |
| DpnI | GATC | 5 cut(s) | 131, 276, 980, 1799, 1813 |
| DpnII | GATC | 5 cut(s) | 129, 274, 978, 1797, 1811 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 53 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 53 |
| EaeI | YGGCCR | 5 cut(s) | 231, 265, 294, 430, 1578 |
| EagI | CGGCCG | 1 cut(s) | 430 |
| Eam1104I | CTCTTC | 7 cut(s) | 143, 470, 586, 593, 891, 1695, 1984 |
| EarI | CTCTTC | 7 cut(s) | 143, 470, 586, 593, 891, 1695, 1984 |
| EciI | GGCGGA | 2 cut(s) | 445, 496 |
| Ecl136II | GAGCTC | 1 cut(s) | 105 |
| EclXI | CGGCCG | 1 cut(s) | 430 |
| Eco130I | CCWWGG | 4 cut(s) | 498, 621, 1586, 2235 |
| Eco147I | AGGCCT | 2 cut(s) | 191, 503 |
| Eco24I | GRGCYC | 2 cut(s) | 107, 2444 |
| Eco31I | GGTCTC | 1 cut(s) | 382 |
| Eco47I | GGWCC | 6 cut(s) | 89, 447, 453, 2156, 2400, 2775 |
| Eco47III | AGCGCT | 1 cut(s) | 885 |
| Eco52I | CGGCCG | 1 cut(s) | 430 |
| Eco53kI | GAGCTC | 1 cut(s) | 105 |
| Eco57I | CTGAAG | 4 cut(s) | 410, 1049, 1646, 2558 |
| Eco88I | CYCGRG | 2 cut(s) | 100, 2021 |
| EcoICRI | GAGCTC | 1 cut(s) | 105 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 112 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2400, 2775 |
| EcoRI | GAATTC | 1 cut(s) | 707 |
| EcoRII | CCWGG | 3 cut(s) | 113, 449, 2549 |
| EcoT14I | CCWWGG | 4 cut(s) | 498, 621, 1586, 2235 |
| EcoT22I | ATGCAT | 1 cut(s) | 602 |
| EcoT38I | GRGCYC | 2 cut(s) | 107, 2444 |
| EgeI | GGCGCC | 1 cut(s) | 427 |
| EheI | GGCGCC | 1 cut(s) | 427 |
| ErhI | CCWWGG | 4 cut(s) | 498, 621, 1586, 2235 |
| Esp3I | CGTCTC | 2 cut(s) | 345, 655 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1070, 1102, 1595, 1627 |
| FaqI | GGGAC | 2 cut(s) | 1313, 2632 |
| FauI | CCCGC | 1 cut(s) | 1904 |
| FbaI | TGATCA | 1 cut(s) | 1797 |
| FblI | GTMKAC | 3 cut(s) | 1155, 1683, 2664 |
| Fnu4HI | GCNGC | 9 cut(s) | 252, 882, 956, 1622, 1889, 1938, 2039, 2204, 2681 |
| FokI | GGATG | 5 cut(s) | 32, 200, 1765, 1947, 2673 |
| FriOI | GRGCYC | 2 cut(s) | 107, 2444 |
| Fsp4HI | GCNGC | 9 cut(s) | 252, 882, 956, 1622, 1889, 1938, 2039, 2204, 2681 |
| FspBI | CTAG | 7 cut(s) | 95, 156, 165, 744, 2294, 2324, 2812 |
| GlaI | GCGC | 6 cut(s) | 427, 885, 1936, 2624, 2679, 2757 |
| GluI | GCNGC | 9 cut(s) | 252, 882, 956, 1622, 1889, 1938, 2039, 2204, 2681 |
| GsaI | CCCAGC | 2 cut(s) | 523, 2133 |
| GsuI | CTGGAG | 2 cut(s) | 97, 734 |
| HaeII | RGCGCY | 3 cut(s) | 429, 887, 2759 |
| HgaI | GACGC | 9 cut(s) | 315, 370, 383, 672, 788, 1993, 2614, 2629, 2645 |
| HhaI | GCGC | 6 cut(s) | 428, 886, 1937, 2625, 2680, 2758 |
| Hin1I | GRCGYC | 4 cut(s) | 326, 426, 780, 2656 |
| Hin6I | GCGC | 6 cut(s) | 426, 884, 1935, 2623, 2678, 2756 |
| HinP1I | GCGC | 6 cut(s) | 426, 884, 1935, 2623, 2678, 2756 |
| HincII | GTYRAC | 2 cut(s) | 1533, 1930 |
| HindII | GTYRAC | 2 cut(s) | 1533, 1930 |
| HindIII | AAGCTT | 1 cut(s) | 2409 |
| HphI | GGTGA | 4 cut(s) | 605, 689, 1974, 2555 |
| Hpy166II | GTNNAC | 9 cut(s) | 238, 970, 1156, 1533, 1684, 1930, 2008, 2533, 2665 |
| Hpy8I | GTNNAC | 9 cut(s) | 238, 970, 1156, 1533, 1684, 1930, 2008, 2533, 2665 |
| Hpy99I | CGWCG | 9 cut(s) | 188, 224, 331, 364, 438, 533, 548, 2156, 2198 |
| HpyAV | CCTTC | 6 cut(s) | 70, 305, 1510, 1520, 2082, 2534 |
| HpyCH4III | ACNGT | 8 cut(s) | 242, 529, 985, 1455, 2050, 2156, 2522, 2717 |
| HpyCH4IV | ACGT | 5 cut(s) | 195, 436, 538, 1415, 2196 |
| HpySE526I | ACGT | 5 cut(s) | 195, 436, 538, 1415, 2196 |
| Hsp92I | GRCGYC | 4 cut(s) | 326, 426, 780, 2656 |
| HspAI | GCGC | 6 cut(s) | 426, 884, 1935, 2623, 2678, 2756 |
| KasI | GGCGCC | 1 cut(s) | 425 |
| Kpn2I | TCCGGA | 1 cut(s) | 277 |
| KpnI | GGTACC | 1 cut(s) | 1069 |
| KroI | GCCGGC | 2 cut(s) | 428, 632 |
| KroNI | GCCGGC | 2 cut(s) | 430, 634 |
| Ksp22I | TGATCA | 1 cut(s) | 1797 |
| KspI | CCGCGG | 1 cut(s) | 33 |
| Kzo9I | GATC | 5 cut(s) | 129, 274, 978, 1797, 1811 |
| LguI | GCTCTTC | 2 cut(s) | 470, 891 |
| Lsp1109I | GCAGC | 5 cut(s) | 893, 942, 2050, 2190, 2667 |
| LweI | GCATC | 5 cut(s) | 1110, 1827, 1969, 2536, 2692 |
| MabI | ACCWGGT | 1 cut(s) | 449 |
| MaeI | CTAG | 7 cut(s) | 95, 156, 165, 744, 2294, 2324, 2812 |
| MaeII | ACGT | 5 cut(s) | 195, 436, 538, 1415, 2196 |
| MaeIII | GTNAC | 4 cut(s) | 11, 202, 1266, 2425 |
| MalI | GATC | 5 cut(s) | 131, 276, 980, 1799, 1813 |
| MbiI | CCGCTC | 1 cut(s) | 1911 |
| MboI | GATC | 5 cut(s) | 129, 274, 978, 1797, 1811 |
| MfeI | CAATTG | 2 cut(s) | 2650, 2750 |
| MflI | RGATCY | 1 cut(s) | 274 |
| MhlI | GDGCHC | 8 cut(s) | 107, 240, 652, 972, 1408, 2170, 2444, 2725 |
| MlsI | TGGCCA | 3 cut(s) | 267, 296, 1580 |
| MluNI | TGGCCA | 3 cut(s) | 267, 296, 1580 |
| Mly113I | GGCGCC | 1 cut(s) | 426 |
| MlyI | GAGTC | 8 cut(s) | 41, 218, 298, 626, 734, 1015, 1027, 2026 |
| MmeI | TCCRAC | 4 cut(s) | 69, 876, 1351, 1369 |
| Mox20I | TGGCCA | 3 cut(s) | 267, 296, 1580 |
| Mph1103I | ATGCAT | 1 cut(s) | 602 |
| MreI | CGCCGGCG | 1 cut(s) | 632 |
| MroI | TCCGGA | 1 cut(s) | 277 |
| MroNI | GCCGGC | 2 cut(s) | 428, 632 |
| MroXI | GAANNNNTTC | 2 cut(s) | 80, 539 |
| MscI | TGGCCA | 3 cut(s) | 267, 296, 1580 |
| MseI | TTAA | 2 cut(s) | 1710, 2343 |
| MslI | CAYNNNNRTG | 5 cut(s) | 18, 605, 1954, 2062, 2234 |
| Msp20I | TGGCCA | 3 cut(s) | 267, 296, 1580 |
| MspA1I | CMGCKG | 3 cut(s) | 32, 87, 1624 |
| MspR9I | CCNGG | 6 cut(s) | 115, 451, 647, 1857, 1986, 2551 |
| MunI | CAATTG | 2 cut(s) | 2650, 2750 |
| Mva1269I | GAATGC | 2 cut(s) | 602, 1568 |
| MvaI | CCWGG | 3 cut(s) | 115, 451, 2551 |
| MvnI | CGCG | 4 cut(s) | 32, 2623, 2625, 2678 |
| NaeI | GCCGGC | 2 cut(s) | 430, 634 |
| NarI | GGCGCC | 1 cut(s) | 426 |
| NciI | CCSGG | 3 cut(s) | 647, 1857, 1986 |
| NcoI | CCATGG | 1 cut(s) | 2235 |
| NdeII | GATC | 5 cut(s) | 129, 274, 978, 1797, 1811 |
| NgoMIV | GCCGGC | 2 cut(s) | 428, 632 |
| NlaIV | GGNNCC | 7 cut(s) | 276, 427, 749, 1067, 2227, 2402, 2724 |
| NmeAIII | GCCGAG | 3 cut(s) | 1022, 2014, 2723 |
| NmuCI | GTSAC | 2 cut(s) | 11, 2425 |
| NsiI | ATGCAT | 1 cut(s) | 602 |
| NspI | RCATGY | 3 cut(s) | 1882, 1924, 2113 |
| NspV | TTCGAA | 2 cut(s) | 1953, 2014 |
| PaeR7I | CTCGAG | 1 cut(s) | 100 |
| PceI | AGGCCT | 2 cut(s) | 191, 503 |
| PciI | ACATGT | 2 cut(s) | 1878, 1920 |
| PciSI | GCTCTTC | 2 cut(s) | 470, 891 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 183, 192, 216, 335, 735 |
| PctI | GAATGC | 2 cut(s) | 602, 1568 |
| PdiI | GCCGGC | 2 cut(s) | 430, 634 |
| PdmI | GAANNNNTTC | 2 cut(s) | 80, 539 |
| PfeI | GAWTC | 7 cut(s) | 680, 792, 1435, 1834, 2220, 2464, 2578 |
| PflFI | GACNNNGTC | 1 cut(s) | 451 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 120, 519, 1478, 1587 |
| PfoI | TCCNGGA | 1 cut(s) | 1855 |
| PinAI | ACCGGT | 1 cut(s) | 1270 |
| PkrI | GCNGC | 9 cut(s) | 253, 883, 957, 1623, 1890, 1939, 2040, 2205, 2682 |
| PleI | GAGTC | 8 cut(s) | 41, 218, 298, 625, 734, 1014, 1026, 2026 |
| PluTI | GGCGCC | 1 cut(s) | 429 |
| PpsI | GAGTC | 8 cut(s) | 41, 218, 298, 625, 734, 1014, 1026, 2026 |
| Ppu21I | YACGTR | 1 cut(s) | 196 |
| PpuMI | RGGWCCY | 2 cut(s) | 2400, 2775 |
| PscI | ACATGT | 2 cut(s) | 1878, 1920 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2624 |
| Psp124BI | GAGCTC | 1 cut(s) | 107 |
| Psp1406I | AACGTT | 1 cut(s) | 538 |
| Psp5II | RGGWCCY | 2 cut(s) | 2400, 2775 |
| Psp6I | CCWGG | 3 cut(s) | 113, 449, 2549 |
| PspFI | CCCAGC | 2 cut(s) | 519, 2129 |
| PspGI | CCWGG | 3 cut(s) | 113, 449, 2549 |
| PspN4I | GGNNCC | 7 cut(s) | 276, 427, 749, 1067, 2227, 2402, 2724 |
| PspPI | GGNCC | 8 cut(s) | 89, 447, 453, 522, 2156, 2226, 2400, 2775 |
| PspPPI | RGGWCCY | 2 cut(s) | 2400, 2775 |
| PspXI | VCTCGAGB | 1 cut(s) | 100 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1015, 1027 |
| PsuI | RGATCY | 1 cut(s) | 274 |
| PsyI | GACNNNGTC | 1 cut(s) | 451 |
| RseI | CAYNNNNRTG | 5 cut(s) | 18, 605, 1954, 2062, 2234 |
| SacI | GAGCTC | 1 cut(s) | 107 |
| SacII | CCGCGG | 1 cut(s) | 33 |
| SapI | GCTCTTC | 2 cut(s) | 470, 891 |
| SaqAI | TTAA | 2 cut(s) | 1710, 2343 |
| SatI | GCNGC | 9 cut(s) | 252, 882, 956, 1622, 1889, 1938, 2039, 2204, 2681 |
| Sau3AI | GATC | 5 cut(s) | 129, 274, 978, 1797, 1811 |
| Sau96I | GGNCC | 8 cut(s) | 89, 447, 453, 522, 2156, 2226, 2400, 2775 |
| ScaI | AGTACT | 2 cut(s) | 163, 1082 |
| SchI | GAGTC | 8 cut(s) | 41, 218, 298, 626, 734, 1015, 1027, 2026 |
| ScrFI | CCNGG | 6 cut(s) | 115, 451, 647, 1857, 1986, 2551 |
| SduI | GDGCHC | 8 cut(s) | 107, 240, 652, 972, 1408, 2170, 2444, 2725 |
| SexAI | ACCWGGT | 1 cut(s) | 449 |
| SfaNI | GCATC | 5 cut(s) | 1110, 1827, 1969, 2536, 2692 |
| SfcI | CTRYAG | 1 cut(s) | 1563 |
| SfoI | GGCGCC | 1 cut(s) | 427 |
| Sfr274I | CTCGAG | 1 cut(s) | 100 |
| Sfr303I | CCGCGG | 1 cut(s) | 33 |
| SfuI | TTCGAA | 2 cut(s) | 1953, 2014 |
| SgrAI | CRCCGGYG | 1 cut(s) | 632 |
| SgrBI | CCGCGG | 1 cut(s) | 33 |
| SinI | GGWCC | 6 cut(s) | 89, 447, 453, 2156, 2400, 2775 |
| SlaI | CTCGAG | 1 cut(s) | 100 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 18, 605, 1954, 2062, 2234 |
| SmlI | CTYRAG | 4 cut(s) | 100, 482, 1838, 2042 |
| SmoI | CTYRAG | 4 cut(s) | 100, 482, 1838, 2042 |
| SpeI | ACTAGT | 1 cut(s) | 155 |
| SseBI | AGGCCT | 2 cut(s) | 191, 503 |
| SspDI | GGCGCC | 1 cut(s) | 425 |
| SspMI | CTAG | 7 cut(s) | 95, 156, 165, 744, 2294, 2324, 2812 |
| SstI | GAGCTC | 1 cut(s) | 107 |
| StuI | AGGCCT | 2 cut(s) | 191, 503 |
| StyD4I | CCNGG | 6 cut(s) | 113, 449, 645, 1855, 1984, 2549 |
| StyI | CCWWGG | 4 cut(s) | 498, 621, 1586, 2235 |
| TaaI | ACNGT | 8 cut(s) | 242, 529, 985, 1455, 2050, 2156, 2522, 2717 |
| TaiI | ACGT | 5 cut(s) | 198, 439, 541, 1418, 2199 |
| TatI | WGTACW | 5 cut(s) | 161, 1080, 1170, 1917, 2320 |
| TauI | GCSGC | 4 cut(s) | 254, 1624, 1891, 1940 |
| TfiI | GAWTC | 7 cut(s) | 680, 792, 1435, 1834, 2220, 2464, 2578 |
| Tru1I | TTAA | 2 cut(s) | 1710, 2343 |
| Tru9I | TTAA | 2 cut(s) | 1710, 2343 |
| TscAI | CASTG | 9 cut(s) | 247, 466, 835, 1263, 1770, 1833, 1878, 2533, 2565 |
| TseFI | GTSAC | 2 cut(s) | 11, 2425 |
| TseI | GCWGC | 5 cut(s) | 881, 955, 2038, 2203, 2680 |
| Tsp45I | GTSAC | 2 cut(s) | 11, 2425 |
| TspDTI | ATGAA | 6 cut(s) | 478, 623, 1343, 2046, 2285, 2786 |
| TspGWI | ACGGA | 2 cut(s) | 1460, 2178 |
| TspRI | CASTG | 9 cut(s) | 247, 466, 835, 1263, 1770, 1833, 1878, 2533, 2565 |
| Tth111I | GACNNNGTC | 1 cut(s) | 451 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 120, 519, 1478, 1587 |
| VneI | GTGCAC | 2 cut(s) | 236, 968 |
| VpaK11BI | GGWCC | 6 cut(s) | 89, 447, 453, 2156, 2400, 2775 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 112 |
| XapI | RAATTY | 4 cut(s) | 707, 1244, 2272, 2806 |
| XceI | RCATGY | 3 cut(s) | 1882, 1924, 2113 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 304, 1059, 1318, 2594 |
| XhoI | CTCGAG | 1 cut(s) | 100 |
| XmiI | GTMKAC | 3 cut(s) | 1155, 1683, 2664 |
| XmnI | GAANNNNTTC | 2 cut(s) | 80, 539 |
| XspI | CTAG | 7 cut(s) | 95, 156, 165, 744, 2294, 2324, 2812 |
| ZrmI | AGTACT | 2 cut(s) | 163, 1082 |
| Zsp2I | ATGCAT | 1 cut(s) | 602 |