Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000823

Physical Location & Seq

Genomic Coordinates Reverse (-)

19387751 .. 19395423

Gene Structure 7673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG175200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 209 bp

ATGCCTACCAAGGTTCTGCACATTACCACCAGGAAGTCACCCTGTGGAGAAGGTACCAACACATGGGACAGATTTGAGTTGCGTGGGCATAAGCGTGTTATTGATCTCTTCAGCTCTCCTGATGTCTGTGCTGCTTGGATTTCAAGGCTTGAAGGAGGATTTGCGAACTTGGAGGTCGAAGAACGACTCACGTTGAGGTCTGTTGCGAT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

69

Amino Acids

7.8

Weight (kDa)

7.85

Isoelectric Point (pI)

53.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	1 - 50	1.3e-11	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45030 AT3G47370 AT3G47370 AT3G47370 AT5G62300 AT5G62300
fragaria_vesca	FvH4_4g30020 FvH4_7g28020 FvH4_7g28020 FvH4_7g28020
malus_domestica	MD01G1184700.v1.1 MD07G1256900.v1.1
prunus_persica	Prupe.1G120500_v2.0.a1 Prupe.1G287000_v2.0.a1 Prupe.2G281000_v2.0.a1 Prupe.2G281100_v2.0.a1 Prupe.5G012000_v2.0.a1 Prupe.5G059500_v2.0.a1
pyrus_communis	pycom01g19640 pycom07g22980
rosa_chinensis	RchiOBHm_Chr1g0318011 RchiOBHm_Chr1g0324851 RchiOBHm_Chr1g0350101 RchiOBHm_Chr1g0374951 RchiOBHm_Chr4g0396241 RchiOBHm_Chr4g0438311
rosa_laevigata	RLG00000006371 RLG00000010263 RLG00000018308 RLG00000026704
rosa_multiflora	Rmu_sc0001225.1_g000007 Rmu_sc0002962.1_g000010 Rmu_sc0011129.1_g000002
rosa_roxburghii	Rroxscaffold_2G00109290 Rroxscaffold_2G00154010 Rroxscaffold_4G00283150 Rroxscaffold_4G00305070 Rroxscaffold_5G00379400
rosa_rugosa	Rorug01G0386300 Rorug03G0329000 Rorug03G0329100 Rorug03G0329200 Rorug03G0329200 Rorug03G0329300 Rorug03G0329400 Rorug03G0329500 Rorug04G0308900 Rorug06G0060300
rosa_samantha	Rh1BG361500 Rh1CG375100 Rh1CG421700 Rh1DG392500 Rh2AG274500 Rh2AG496700 Rh2CG292500 Rh2CG482700 Rh4AG360000 Rh4BG371000 Rh4DG365900 Rh5AG175200 Rh5CG471800
rosa_wichuraiana	Rw0G006460 Rw0G016400 Rw1G035270 Rw5G003840 Rw5G025040 Rw6G009770 Rw6G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	53
AccB7I	CCANNNNNTGG	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	94
AdeI	CACNNNGTG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	144, 152
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	131
Asp718I	GGTACC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	31
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	118
BshNI	GGYRCC	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	113
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	1 cut(s)	63
CviJI	RGCY	2 cut(s)	114, 148
CviKI_1	RGCY	2 cut(s)	114, 148
CviQI	GTAC	1 cut(s)	54
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
DraIII	CACNNNGTG	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	1 cut(s)	66
FaiI	YATR	2 cut(s)	64, 90
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	66
HinfI	GANTC	1 cut(s)	186
HphI	GGTGA	1 cut(s)	30
Hpy188III	TCNNGA	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	44, 146
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	19
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	66
KpnI	GGTACC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	4 cut(s)	16, 43, 55, 132
Lsp1109I	GCAGC	1 cut(s)	118
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	100, 191
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	3 cut(s)	149, 166, 189
MslI	CAYNNNNRTG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	55
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	6 cut(s)	15, 55, 116, 177, 194, 200
SmiMI	CAYNNNNRTG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	9
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	36
Van91I	CCANNNNNTGG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.