Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003344

Physical Location & Seq

Genomic Coordinates Reverse (-)

4197082 .. 4199078

Gene Structure 1997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTTTCTGAAGTGGAACTTGTTAGGGGTGTAGTTGTCCTTGCTGAAAAGCTAGACAAAGACAGTGCGGTTACTTCAAGATCTGTTATAACAACACAGCTTTTGGAGGACTTGTTAAGAGAGAAGGCCAGCAAGGATCATGGCTACTTCCTTAAAGTCACTGCCTTGAAGATGATAGGAAAAGGACAGGTTTCAGACGACTCAAGAAAGATGTTGTTCCCTGTAGCTTTTAGCTGTCGTACGTTCATACCGTGCCAGGGGGAGATTTTGGAGGGAGTCGTTCGTCATGTGCATAACCTTGGGGTGACCATTAGATGTGGACCTCTTAACTATGCTTTTCTGTCAGCTCGAAAAATGCCAAATTACCACTATGTCGATGGGATGAATCCATTCTTCTTGAGGGGTGACCTTGCAAAGATAGACAAAGAAGTTGTGGTTCGGTTCAGGGTGCTTCAGGCTAGATGGATAGAGAAGAGTAGAGAGATGAGGAAGGAGTTTGTGATGGTTGTTAGTATAGTTGGTGATTCACTCGGCCCTGTTTGTGGTCCTCATGAATCAGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000428 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006401 GO:0006402 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031369 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045727 GO:0045935 GO:0045948 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0055029 GO:0060211 GO:0060213 GO:0060255 GO:0061013 GO:0061014 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1900151 GO:1900153 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902494 GO:1903311 GO:1903313 GO:1990234 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

188

Amino Acids

21.22

Weight (kDa)

8.9

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520
fragaria_vesca	FvH4_4g02580 FvH4_4g02580
malus_domestica	MD13G1206600.v1.1 MD16G1207800.v1.1
prunus_persica	Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1
pyrus_communis	pycom13g17900 pycom16g17520
rosa_chinensis	RchiOBHm_Chr4g0390281
rosa_laevigata	RLG00000009928
rosa_multiflora	Rmu_sc0004432.1_g000010 Rmu_sc0014620.1_g000002
rosa_roxburghii	Rroxscaffold_5G00336400
rosa_rugosa	Rorug03G0329000
rosa_samantha	Rh4AG031400 Rh4BG025400 Rh4CG034600 Rh4DG026600
rosa_wichuraiana	Rw4G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	144
AcuI	CTGAAG	2 cut(s)	30, 437
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	2 cut(s)	257, 542
AgsI	TTSAA	2 cut(s)	78, 169
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	5 cut(s)	52, 100, 227, 234, 347
AluI	AGCT	5 cut(s)	52, 100, 227, 234, 347
AlwI	GGATC	1 cut(s)	144
AoxI	GGCC	2 cut(s)	126, 532
Asp700I	GAANNNNTTC	1 cut(s)	389
AspS9I	GGNCC	3 cut(s)	320, 533, 545
AsuHPI	GGTGA	3 cut(s)	316, 416, 533
AvaII	GGWCC	2 cut(s)	320, 545
BccI	CCATC	3 cut(s)	371, 456, 496
BciT130I	CCWGG	1 cut(s)	257
BfaI	CTAG	2 cut(s)	53, 459
BfmI	CTRYAG	1 cut(s)	222
BglII	AGATCT	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	2 cut(s)	320, 545
BmgT120I	GGNCC	3 cut(s)	320, 533, 545
BmrFI	CCNGG	1 cut(s)	257
BpuEI	CTTGAG	2 cut(s)	187, 418
BsaJI	CCNNGG	2 cut(s)	256, 298
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 542
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	256, 298
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	257, 542
BshFI	GGCC	2 cut(s)	128, 534
BsiWI	CGTACG	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	257, 542
BsnI	GGCC	2 cut(s)	128, 534
Bsp143I	GATC	2 cut(s)	80, 136
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	128, 534
BspHI	TCATGA	1 cut(s)	550
BspPI	GGATC	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	256, 298
BssMI	GATC	2 cut(s)	80, 136
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	65, 252
Bst6I	CTCTTC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	130
BstEII	GGTNACC	2 cut(s)	304, 404
BstF5I	GGATG	1 cut(s)	387
BstKTI	GATC	2 cut(s)	83, 139
BstMBI	GATC	2 cut(s)	80, 136
BstNI	CCWGG	1 cut(s)	257
BstPI	GGTNACC	2 cut(s)	304, 404
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	128, 534
BtsCI	GGATG	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	70, 159
Cac8I	GCNNGC	1 cut(s)	130
CciI	TCATGA	1 cut(s)	550
Cfr13I	GGNCC	3 cut(s)	320, 533, 545
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	3 cut(s)	140, 287, 551
CviJI	RGCY	9 cut(s)	52, 100, 128, 144, 227, 234, 347, 458, 534
CviKI_1	RGCY	9 cut(s)	52, 100, 128, 144, 227, 234, 347, 458, 534
CviQI	GTAC	1 cut(s)	240
DpnI	GATC	2 cut(s)	82, 138
DpnII	GATC	2 cut(s)	80, 136
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Eco130I	CCWWGG	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	320, 545
Eco57I	CTGAAG	2 cut(s)	30, 437
Eco91I	GGTNACC	2 cut(s)	304, 404
EcoO65I	GGTNACC	2 cut(s)	304, 404
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	3 cut(s)	143, 290, 554
FaiI	YATR	9 cut(s)	89, 141, 248, 288, 294, 333, 372, 515, 552
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	3 cut(s)	139, 286, 550
FokI	GGATG	1 cut(s)	394
FspBI	CTAG	2 cut(s)	53, 459
HaeIII	GGCC	2 cut(s)	128, 534
Hin1II	CATG	3 cut(s)	143, 290, 554
HinfI	GANTC	5 cut(s)	200, 276, 385, 524, 554
HphI	GGTGA	3 cut(s)	316, 416, 533
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	3 cut(s)	10, 196, 559
Hpy188III	TCNNGA	4 cut(s)	78, 204, 397, 551
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	118, 484
HpyCH4III	ACNGT	2 cut(s)	65, 252
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	2 cut(s)	292, 413
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	143, 290, 554
Kzo9I	GATC	2 cut(s)	80, 136
LpnPI	CCDG	8 cut(s)	142, 173, 234, 242, 269, 430, 440, 549
MaeI	CTAG	2 cut(s)	53, 459
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	4 cut(s)	70, 157, 304, 404
MalI	GATC	2 cut(s)	82, 138
MboI	GATC	2 cut(s)	80, 136
MboII	GAAGA	3 cut(s)	181, 385, 484
MflI	RGATCY	1 cut(s)	80
MluCI	AATT	1 cut(s)	361
MlyI	GAGTC	2 cut(s)	194, 285
MnlI	CCTC	6 cut(s)	100, 265, 333, 393, 480, 558
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	3 cut(s)	116, 153, 327
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
NdeII	GATC	2 cut(s)	80, 136
NlaIII	CATG	3 cut(s)	143, 290, 554
NmeAIII	GCCGAG	1 cut(s)	510
NmuCI	GTSAC	3 cut(s)	157, 304, 404
PagI	TCATGA	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	3 cut(s)	385, 524, 554
Pfl23II	CGTACG	1 cut(s)	239
PleI	GAGTC	2 cut(s)	194, 284
PpsI	GAGTC	2 cut(s)	194, 284
PsiI	TTATAA	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	255
PspEI	GGTNACC	2 cut(s)	304, 404
PspGI	CCWGG	1 cut(s)	255
PspLI	CGTACG	1 cut(s)	239
PspPI	GGNCC	3 cut(s)	320, 533, 545
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	116, 153, 327
Sau3AI	GATC	2 cut(s)	80, 136
Sau96I	GGNCC	3 cut(s)	320, 533, 545
SchI	GAGTC	2 cut(s)	194, 285
ScrFI	CCNGG	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	2 cut(s)	320, 545
SmlI	CTYRAG	2 cut(s)	202, 397
SmoI	CTYRAG	2 cut(s)	202, 397
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	53, 459
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	65, 252
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	349, 375
TasI	AATT	1 cut(s)	361
TfiI	GAWTC	3 cut(s)	385, 524, 554
Tru1I	TTAA	3 cut(s)	116, 153, 327
Tru9I	TTAA	3 cut(s)	116, 153, 327
TscAI	CASTG	2 cut(s)	70, 166
TseFI	GTSAC	3 cut(s)	157, 304, 404
Tsp45I	GTSAC	3 cut(s)	157, 304, 404
TspDTI	ATGAA	3 cut(s)	235, 398, 567
TspRI	CASTG	2 cut(s)	70, 166
VpaK11BI	GGWCC	2 cut(s)	320, 545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	2 cut(s)	53, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.