Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003344

Physical Location & Seq

Genomic Coordinates Reverse (-)

18840666 .. 18842663

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1206600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTTTATGAAGTGGAATTGTTCAGGGAAGTGGCTGTCCTTCCTGAAAATCTAGACCAAGACAGACTTGTATCTACAAGGACCGTTGTAACACGGCTTTTGGAGGATTTGTTAAGAGAGAAGGCAGACAAGGATCTCGGATACTTTCTCGCGGTCACTGGCTTAAAGAGGATTGGGAAAGGAGAGGTTGTAGACAACTCAGGAGACGTGTTCTTCCCTGTAGTATTCAATTGTCGCATGTTCCTACCTTGCAAGGGAGAGATCATGGAAGGAGTAGTTCATCACATATACAGGCTTGGGGTTTTCTTGAGATGTGGACCTATAAATTACGTTTTTCTCTCCGCTCGGAAAATGCCAAACTTCCGCTATGTTGCTGGCGAAAGTCCAGTTTTCTTGAACGACGACCTTGCAAAGATAGAGAAGGATGTTGTAATTCGTTTCAAGGTGCTGGGAGTCAGATGGATAGAGATTAGGGATGATATAAGAAAGGAGTTTGTGATGCTTGCCAGTTTAGAGGGCGATTCGCTTGGTCCCCTTACGTTACCTGGTCCTGATGGACTGGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000428 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006401 GO:0006402 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031369 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045727 GO:0045935 GO:0045948 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0055029 GO:0060211 GO:0060213 GO:0060255 GO:0061013 GO:0061014 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1900151 GO:1900153 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902494 GO:1903311 GO:1903313 GO:1990234 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

190

Amino Acids

21.53

Weight (kDa)

5.33

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520
fragaria_vesca	FvH4_4g02580 FvH4_4g02580
malus_domestica	MD13G1206600.v1.1 MD16G1207800.v1.1
prunus_persica	Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1
pyrus_communis	pycom13g17900 pycom16g17520
rosa_chinensis	RchiOBHm_Chr4g0390281
rosa_laevigata	RLG00000009928
rosa_multiflora	Rmu_sc0004432.1_g000010 Rmu_sc0014620.1_g000002
rosa_roxburghii	Rroxscaffold_5G00336400
rosa_rugosa	Rorug03G0329000
rosa_samantha	Rh4AG031400 Rh4BG025400 Rh4CG034600 Rh4DG026600
rosa_wichuraiana	Rw4G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	152
AciI	CCGC	3 cut(s)	152, 342, 364
AclWI	GGATC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	3 cut(s)	229, 397, 442
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	544
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	141
AspS9I	GGNCC	4 cut(s)	81, 317, 530, 548
AvaII	GGWCC	4 cut(s)	81, 317, 530, 548
BccI	CCATC	2 cut(s)	453, 548
BceAI	ACGGC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	4 cut(s)	81, 317, 530, 548
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	4 cut(s)	81, 317, 530, 548
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	328
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 174, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	4 cut(s)	163, 386, 507, 564
BseBI	CCWGG	1 cut(s)	546
BseGI	GGATG	2 cut(s)	430, 481
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	4 cut(s)	163, 386, 507, 564
BseYI	CCCAGC	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	516
Bsp143I	GATC	2 cut(s)	133, 261
BspACI	CCGC	3 cut(s)	152, 342, 364
BspCNI	CTCAG	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	532
BspPI	GGATC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	344
BsrI	ACTGG	4 cut(s)	163, 386, 507, 564
BssMI	GATC	2 cut(s)	133, 261
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	376, 504
BstDEI	CTNAG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	430, 481
BstFNI	CGCG	1 cut(s)	152
BstKTI	GATC	2 cut(s)	136, 264
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	2 cut(s)	133, 261
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuI	GTATCC	1 cut(s)	134
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	430, 481
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	376, 504
Cfr13I	GGNCC	4 cut(s)	81, 317, 530, 548
CsiI	ACCWGGT	1 cut(s)	544
CviAII	CATG	2 cut(s)	238, 265
CviJI	RGCY	4 cut(s)	35, 97, 162, 295
CviKI_1	RGCY	4 cut(s)	35, 97, 162, 295
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	2 cut(s)	135, 263
DpnII	GATC	2 cut(s)	133, 261
Eco47I	GGWCC	4 cut(s)	81, 317, 530, 548
EcoRII	CCWGG	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	2 cut(s)	241, 268
FaiI	YATR	8 cut(s)	9, 239, 266, 287, 289, 323, 369, 482
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	2 cut(s)	237, 264
FblI	GTMKAC	1 cut(s)	192
FokI	GGATG	2 cut(s)	437, 488
FspBI	CTAG	1 cut(s)	53
GsaI	CCCAGC	1 cut(s)	452
Hin1II	CATG	2 cut(s)	241, 268
HinfI	GANTC	2 cut(s)	453, 521
Hpy166II	GTNNAC	2 cut(s)	193, 317
Hpy188I	TCNGA	3 cut(s)	140, 348, 458
Hpy188III	TCNNGA	6 cut(s)	44, 53, 201, 307, 394, 551
Hpy8I	GTNNAC	2 cut(s)	193, 317
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	4 cut(s)	50, 115, 263, 415
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	3 cut(s)	207, 330, 539
HpyCH4V	TGCA	2 cut(s)	252, 410
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	3 cut(s)	207, 330, 539
Hsp92II	CATG	2 cut(s)	241, 268
Kzo9I	GATC	2 cut(s)	133, 261
LweI	GCATC	1 cut(s)	489
MabI	ACCWGGT	1 cut(s)	544
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	3 cut(s)	207, 330, 539
MaeIII	GTNAC	3 cut(s)	88, 154, 540
MalI	GATC	2 cut(s)	135, 263
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	2 cut(s)	133, 261
MboII	GAAGA	1 cut(s)	205
MfeI	CAATTG	1 cut(s)	229
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	4 cut(s)	17, 229, 325, 432
MlyI	GAGTC	1 cut(s)	462
MnlI	CCTC	4 cut(s)	97, 162, 178, 508
MseI	TTAA	2 cut(s)	113, 164
MspR9I	CCNGG	1 cut(s)	546
MunI	CAATTG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	1 cut(s)	152
NdeII	GATC	2 cut(s)	133, 261
NlaIII	CATG	2 cut(s)	241, 268
NlaIV	GGNNCC	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	521
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	544
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	4 cut(s)	81, 317, 530, 548
PsuI	RGATCY	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	113, 164
Sau3AI	GATC	2 cut(s)	133, 261
Sau96I	GGNCC	4 cut(s)	81, 317, 530, 548
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	1 cut(s)	546
SetI	ASST	9 cut(s)	189, 210, 250, 322, 333, 408, 447, 542, 547
SexAI	ACCWGGT	1 cut(s)	544
SfaNI	GCATC	1 cut(s)	489
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	4 cut(s)	81, 317, 530, 548
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	4 cut(s)	17, 229, 325, 432
SsiI	CCGC	3 cut(s)	152, 342, 364
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	544
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	3 cut(s)	210, 333, 542
TasI	AATT	4 cut(s)	17, 229, 325, 432
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	2 cut(s)	113, 164
Tru9I	TTAA	2 cut(s)	113, 164
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	24, 269
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	4 cut(s)	81, 317, 530, 548
XbaI	TCTAGA	1 cut(s)	52
XceI	RCATGY	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.