Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003344

Physical Location & Seq

Genomic Coordinates Reverse (-)

2340380 .. 2342631

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTACTCTGAAGTGGAACTAGTCAGGGGTGTGGTTGTCCTTGCTGAAAAGCTAGACAAAGACAGTCCATTTTCTTCAAAATCTGTTATAACAACACAGCTTCTGAAGGACTTGTTAAAAGAGAAGGCCAGCAAGGATCATGGGTACTTCCTTAAAGTCACTGCATTGAAGAAGGTAGGAACCGGACAGATTTTAGACCACTCAAGAAAGATGTTGTTCCATGTAGCTTTTAGTTGTCGCACGTTCATACCACTCCAGGGAGAGATTTTGGAGGGAGTTGTTTATAAGGTGCATAACCTCGGGGTGTTTATTAGATGTGGACCTCTTAACTATGCTTATCTGTCAGCTCGAAAAATGCCAAATTACCACTATGTCGCTGGGACAAAGCCATTCTTCTTGAAGGGTGACTTAGCAAAGATAGAGAAAAAAGTTGTGGTACGGTTCAGGGTGCTGCATGCTAGATGGACAGCGAAGAGTAGAGAGATCAGGAATGAGTTTGTCGTGCTTGGTAGTATGGTTGGTGATTCGCTTGGCCCTGTCTATGGTCCTCATGAACCTGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000428 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006401 GO:0006402 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031369 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045727 GO:0045935 GO:0045948 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0055029 GO:0060211 GO:0060213 GO:0060255 GO:0061013 GO:0061014 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1900151 GO:1900153 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902494 GO:1903311 GO:1903313 GO:1990234 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

189

Amino Acids

21.22

Weight (kDa)

9.65

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520
fragaria_vesca	FvH4_4g02580 FvH4_4g02580
malus_domestica	MD13G1206600.v1.1 MD16G1207800.v1.1
prunus_persica	Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1
pyrus_communis	pycom13g17900 pycom16g17520
rosa_chinensis	RchiOBHm_Chr4g0390281
rosa_laevigata	RLG00000009928
rosa_multiflora	Rmu_sc0004432.1_g000010 Rmu_sc0014620.1_g000002
rosa_roxburghii	Rroxscaffold_5G00336400
rosa_rugosa	Rorug03G0329000
rosa_samantha	Rh4AG031400 Rh4BG025400 Rh4CG034600 Rh4DG026600
rosa_wichuraiana	Rw4G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	89, 285
AclWI	GGATC	1 cut(s)	144
AcuI	CTGAAG	2 cut(s)	30, 125
AfaI	GTAC	3 cut(s)	5, 146, 438
AfiI	CCNNNNNNNGG	2 cut(s)	257, 542
AgsI	TTSAA	3 cut(s)	78, 169, 400
AhlI	ACTAGT	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	4 cut(s)	52, 100, 227, 347
AluI	AGCT	4 cut(s)	52, 100, 227, 347
AlwI	GGATC	1 cut(s)	144
AlwNI	CAGNNNCTG	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	2 cut(s)	126, 532
ApeKI	GCWGC	1 cut(s)	451
AspS9I	GGNCC	3 cut(s)	320, 533, 545
AsuHPI	GGTGA	2 cut(s)	416, 533
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	320, 545
BbvI	GCAGC	1 cut(s)	438
BccI	CCATC	1 cut(s)	456
BciT130I	CCWGG	1 cut(s)	257
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	3 cut(s)	20, 53, 459
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	2 cut(s)	320, 545
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	3 cut(s)	320, 533, 545
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	256, 298
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 542
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	256, 298
BseLI	CCNNNNNNNGG	2 cut(s)	257, 542
BseXI	GCAGC	1 cut(s)	438
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	2 cut(s)	128, 534
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	2 cut(s)	257, 542
BsmFI	GGGAC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	128, 534
BsoBI	CYCGRG	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	136, 483
BspANI	GGCC	2 cut(s)	128, 534
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	256, 298
BssMI	GATC	2 cut(s)	136, 483
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	65, 441
Bst6I	CTCTTC	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	130, 456
BstDEI	CTNAG	1 cut(s)	409
BstKTI	GATC	2 cut(s)	139, 486
BstMBI	GATC	2 cut(s)	136, 483
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	128, 534
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	130, 456
CaiI	CAGNNNCTG	1 cut(s)	103
CciI	TCATGA	1 cut(s)	550
Cfr13I	GGNCC	3 cut(s)	320, 533, 545
Csp6I	GTAC	3 cut(s)	4, 145, 437
CviAII	CATG	4 cut(s)	140, 221, 455, 551
CviJI	RGCY	7 cut(s)	52, 100, 128, 227, 347, 388, 534
CviKI_1	RGCY	7 cut(s)	52, 100, 128, 227, 347, 388, 534
CviQI	GTAC	3 cut(s)	4, 145, 437
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	2 cut(s)	138, 485
DpnII	GATC	2 cut(s)	136, 483
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Eco47I	GGWCC	2 cut(s)	320, 545
Eco57I	CTGAAG	2 cut(s)	30, 125
Eco88I	CYCGRG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	255
FaeI	CATG	4 cut(s)	143, 224, 458, 554
FalI	AAGNNNNNCTT	4 cut(s)	377, 409, 392, 424
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	4 cut(s)	139, 220, 454, 550
Fnu4HI	GCNGC	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	452
FspBI	CTAG	3 cut(s)	20, 53, 459
GluI	GCNGC	1 cut(s)	452
GsaI	CCCAGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	128, 534
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	4 cut(s)	143, 224, 458, 554
HinfI	GANTC	1 cut(s)	524
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	2 cut(s)	416, 533
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	10, 105
Hpy188III	TCNNGA	4 cut(s)	204, 397, 487, 551
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	4 cut(s)	100, 118, 166, 394
HpyCH4III	ACNGT	2 cut(s)	65, 441
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	3 cut(s)	164, 292, 454
HpyF3I	CTNAG	1 cut(s)	409
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	4 cut(s)	143, 224, 458, 554
Kzo9I	GATC	2 cut(s)	136, 483
LpnPI	CCDG	9 cut(s)	10, 142, 196, 242, 269, 363, 430, 472, 549
Lsp1109I	GCAGC	1 cut(s)	438
MaeI	CTAG	3 cut(s)	20, 53, 459
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	157, 404
MalI	GATC	2 cut(s)	138, 485
MboI	GATC	2 cut(s)	136, 483
MboII	GAAGA	4 cut(s)	66, 181, 385, 484
MluCI	AATT	1 cut(s)	361
MnlI	CCTC	4 cut(s)	265, 308, 333, 558
MseI	TTAA	3 cut(s)	116, 153, 327
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
NdeII	GATC	2 cut(s)	136, 483
NlaIII	CATG	4 cut(s)	143, 224, 458, 554
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	157, 404
NspI	RCATGY	1 cut(s)	458
PaeI	GCATGC	1 cut(s)	458
PagI	TCATGA	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	524
PkrI	GCNGC	1 cut(s)	453
PsiI	TTATAA	2 cut(s)	89, 285
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	3 cut(s)	320, 533, 545
PstNI	CAGNNNCTG	1 cut(s)	103
RsaI	GTAC	3 cut(s)	5, 146, 438
RsaNI	GTAC	3 cut(s)	4, 145, 437
SaqAI	TTAA	3 cut(s)	116, 153, 327
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	2 cut(s)	136, 483
Sau96I	GGNCC	3 cut(s)	320, 533, 545
ScrFI	CCNGG	1 cut(s)	257
SinI	GGWCC	2 cut(s)	320, 545
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
SpeI	ACTAGT	1 cut(s)	19
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	1 cut(s)	361
SspMI	CTAG	3 cut(s)	20, 53, 459
StyD4I	CCNGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	65, 441
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	349
TasI	AATT	1 cut(s)	361
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	3 cut(s)	116, 153, 327
Tru9I	TTAA	3 cut(s)	116, 153, 327
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	2 cut(s)	157, 404
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	2 cut(s)	157, 404
TspDTI	ATGAA	2 cut(s)	235, 567
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	2 cut(s)	320, 545
XceI	RCATGY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XspI	CTAG	3 cut(s)	20, 53, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.