AT4G16270

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015981
Physical Location & Seq
Forward (+)
9205080 .. 9206483
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16270.1

Sequence Viewer

Length: 1047 bp
ATGAAGAATCTCTTTAACTTGTTCCTTATGTTTTTCTTTGCAATGCCAATTCTTTCACTCTCCGAGAATCCAACCAATTTCAGCGAGAGTTGCGAAGACGGGAGTGGAGAAACCGGTTCAAGCTTTGGCATAGGGTTCGATTTGGTTCTTGATTTTGGTTTATACCGGAATAGCTGCCCCGAAGCAGAGTCTATCGTCTACTCGTGGGTGGAAACCACGGTGTTAGAGGATCCAAGAATGGCTGCTTCTCTTCTCCGTCTTCATTTCCACGACTGTTTTGTCAATGGATGTGATGCTTCGGTGTTGTTAGATGACACAGAAGGACTGGTTGGTGAAAAAACGGCGCCTCCTAATCTAAATTCTCTACGAGGGTTCGAAGTGATTGATTCGATAAAGTCTGATATTGAATCTGTATGTCCAGAGACCGTCTCATGCGCAGACATTCTTGCCATGGCTGCTAGAGATTCAGTCGTTGTGTCGGGTGGACCAAGGTGGGAGGTGGAAGTAGGAAGAAAAGACAGTAGAACAGCAAGCAAACAGGCAGCAACAAATGGCTTACCCTCACCAAACTCAACCGTATCAACTCTCATCTCTACTTTCCAGAATCTTGGCCTTTCACAAACCGACATGGTCGCTCTTTCCGGTGGACATACATTGGGAAAGGCACGGTGCACTTCGTTTACAGCTCGGTTGCAGCCACTGCAAACTGGACAACCAGCTAACCACGGAGACAACCTTGAGTTCCTCGAGTCACTGCAACAGTTATGCTCGACTGTTGGGCCCAGTGTAGGTATCACTCAGCTTGACTTGGTGACTCCATCAACATTTGACAACCAGTACTATGTAAACCTCCTCTCGGGTGAGGGATTGCTTCCATCAGACCAGGCTTTAGCGGTTCAAGACCCAGGGACAAGGGCGATTGTTGAGACCTACGCAACAGATCAGTCGGTTTTCTTTGAGGATTTTAAGAACGCTATGGTTAAAATGGGAGGGATACCCGGTGGTAGTAATAGCGAGATTAGGAAGAATTGTAGAATGATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

348

Amino Acids

37.46

Weight (kDa)

4.47

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 67 - 314 1.1e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16270
fragaria_vesca FvH4_4g20220
malus_domestica MD13G1150600.v1.1 MD16G1150800.v1.1 MD16G1150900.v1.1
prunus_persica Prupe.1G114700_v2.0.a1
pyrus_communis pycom13g12940
rosa_chinensis RchiOBHm_Chr4g0425811
rosa_laevigata RLG00000007338
rosa_multiflora Rmu_sc0007063.1_g000002
rosa_roxburghii Rroxscaffold_5G00367800
rosa_rugosa Rorug04G0206400
rosa_samantha Rh4CG281900 Rh4DG265900
rosa_wichuraiana Rw4G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
Acc16I TGCGCA 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 343
AccI GTMKAC 1 cut(s) 198
AciI CCGC 1 cut(s) 893
AclWI GGATC 2 cut(s) 224, 237
AcsI RAATTY 1 cut(s) 358
AcyI GRCGYC 1 cut(s) 344
AfaI GTAC 1 cut(s) 839
AfiI CCNNNNNNNGG 2 cut(s) 788, 856
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 3 cut(s) 120, 407, 899
AjnI CCWGG 2 cut(s) 882, 904
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
AluBI AGCT 5 cut(s) 123, 174, 686, 719, 802
AluI AGCT 5 cut(s) 123, 174, 686, 719, 802
Alw21I GWGCWC 1 cut(s) 674
Alw26I GTCTC 4 cut(s) 416, 433, 723, 920
Alw44I GTGCAC 1 cut(s) 670
AlwI GGATC 2 cut(s) 224, 237
AlwNI CAGNNNCTG 1 cut(s) 700
Ama87I CYCGRG 2 cut(s) 746, 856
AoxI GGCC 2 cut(s) 610, 779
ApaI GGGCCC 1 cut(s) 783
ApaLI GTGCAC 1 cut(s) 670
ApeKI GCWGC 5 cut(s) 174, 242, 455, 542, 694
ApoI RAATTY 1 cut(s) 358
AsiGI ACCGGT 1 cut(s) 113
AspLEI GCGC 2 cut(s) 346, 437
AspS9I GGNCC 3 cut(s) 485, 779, 780
AsuC2I CCSGG 1 cut(s) 999
AsuHPI GGTGA 4 cut(s) 344, 555, 823, 872
AsuII TTCGAA 1 cut(s) 375
AvaI CYCGRG 2 cut(s) 746, 856
AvaII GGWCC 1 cut(s) 485
BaeGI GKGCMC 2 cut(s) 674, 783
BamHI GGATCC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 783
BauI CACGAG 1 cut(s) 202
BbsI GAAGAC 2 cut(s) 102, 251
Bbv12I GWGCWC 1 cut(s) 674
BbvI GCAGC 5 cut(s) 161, 229, 442, 554, 706
BccI CCATC 2 cut(s) 826, 883
BceAI ACGGC 1 cut(s) 357
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 2 cut(s) 884, 906
BciVI GTATCC 1 cut(s) 987
BcnI CCSGG 1 cut(s) 999
BcoDI GTCTC 4 cut(s) 416, 433, 723, 920
BfaI CTAG 1 cut(s) 459
BfoI RGCGCY 1 cut(s) 347
BfuI GTATCC 1 cut(s) 987
BisI GCNGC 5 cut(s) 175, 243, 456, 543, 695
BlsI GCNGC 5 cut(s) 176, 244, 457, 544, 696
BmcAI AGTACT 1 cut(s) 839
Bme1390I CCNGG 3 cut(s) 884, 906, 999
Bme18I GGWCC 1 cut(s) 485
BmeT110I CYCGRG 2 cut(s) 746, 856
BmgT120I GGNCC 3 cut(s) 485, 779, 780
BmiI GGNNCC 3 cut(s) 231, 345, 781
BmrFI CCNGG 3 cut(s) 884, 906, 999
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 1 cut(s) 283
BmuI ACTGGG 1 cut(s) 777
BpiI GAAGAC 2 cut(s) 102, 251
BplI GAGNNNNNCTC 2 cut(s) 413, 445
Bpu14I TTCGAA 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 1 cut(s) 999
BsaHI GRCGYC 1 cut(s) 344
BsaI GGTCTC 2 cut(s) 416, 920
BsaJI CCNNGG 6 cut(s) 216, 450, 488, 724, 904, 905
BsaWI WCCGGW 3 cut(s) 113, 165, 641
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 788, 856
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 4 cut(s) 330, 712, 783, 835
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 2 cut(s) 884, 906
BseDI CCNNGG 6 cut(s) 216, 450, 488, 724, 904, 905
BseGI GGATG 1 cut(s) 293
BseLI CCNNNNNNNGG 2 cut(s) 788, 856
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 812
BseNI ACTGG 4 cut(s) 330, 712, 783, 835
BseRI GAGGAG 1 cut(s) 842
BseSI GKGCMC 2 cut(s) 674, 783
BseXI GCAGC 5 cut(s) 161, 229, 442, 554, 706
BshFI GGCC 2 cut(s) 612, 781
BshNI GGYRCC 1 cut(s) 343
BshTI ACCGGT 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 674
BsiHKCI CYCGRG 2 cut(s) 746, 856
BsiSI CCGG 4 cut(s) 114, 166, 642, 999
BslFI GGGAC 1 cut(s) 922
BslI CCNNNNNNNGG 2 cut(s) 788, 856
BsmAI GTCTC 4 cut(s) 416, 433, 723, 920
BsmBI CGTCTC 1 cut(s) 433
BsmFI GGGAC 1 cut(s) 922
BsnI GGCC 2 cut(s) 612, 781
Bso31I GGTCTC 2 cut(s) 416, 920
BsoBI CYCGRG 2 cut(s) 746, 856
Bsp119I TTCGAA 1 cut(s) 375
Bsp120I GGGCCC 1 cut(s) 779
Bsp1286I GDGCHC 2 cut(s) 674, 783
Bsp143I GATC 2 cut(s) 229, 940
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 1 cut(s) 893
BspANI GGCC 2 cut(s) 612, 781
BspCNI CTCAG 1 cut(s) 811
BspLI GGNNCC 3 cut(s) 231, 345, 781
BspPI GGATC 2 cut(s) 224, 237
BspT104I TTCGAA 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 343
BspTNI GGTCTC 2 cut(s) 416, 920
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 4 cut(s) 330, 712, 783, 835
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 6 cut(s) 216, 450, 488, 724, 904, 905
BssMI GATC 2 cut(s) 229, 940
BssNI GRCGYC 1 cut(s) 344
BssSI CACGAG 1 cut(s) 202
BssT1I CCWWGG 2 cut(s) 450, 488
Bst2BI CACGAG 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 884, 906
Bst4CI ACNGT 8 cut(s) 220, 275, 427, 521, 577, 669, 762, 775
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 344
BstAPI GCANNNNNTGC 1 cut(s) 700
BstBI TTCGAA 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 798
BstDSI CCRYGG 3 cut(s) 216, 450, 724
BstF5I GGATG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 2 cut(s) 346, 437
BstKTI GATC 2 cut(s) 232, 943
BstMAI GTCTC 4 cut(s) 416, 433, 723, 920
BstMBI GATC 2 cut(s) 229, 940
BstMWI GCNNNNNNNGC 3 cut(s) 90, 455, 700
BstNI CCWGG 2 cut(s) 884, 906
BstSCI CCNGG 3 cut(s) 882, 904, 997
BstSLI GKGCMC 2 cut(s) 674, 783
BstV1I GCAGC 5 cut(s) 161, 229, 442, 554, 706
BstV2I GAAGAC 2 cut(s) 102, 251
BstX2I RGATCY 1 cut(s) 229
BstXI CCANNNNNNTGG 1 cut(s) 608
BstYI RGATCY 1 cut(s) 229
BsuI GTATCC 1 cut(s) 987
BsuRI GGCC 2 cut(s) 612, 781
BtgI CCRYGG 3 cut(s) 216, 450, 724
BtsCI GGATG 1 cut(s) 293
BtsI GCAGTG 2 cut(s) 698, 752
BtsIMutI CAGTG 3 cut(s) 698, 752, 790
Cac8I GCNNGC 1 cut(s) 532
CaiI CAGNNNCTG 1 cut(s) 700
CfoI GCGC 2 cut(s) 346, 437
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 3 cut(s) 485, 779, 780
Csp6I GTAC 1 cut(s) 838
CspAI ACCGGT 1 cut(s) 113
CviAII CATG 3 cut(s) 432, 451, 628
CviQI GTAC 1 cut(s) 838
DdeI CTNAG 1 cut(s) 798
DinI GGCGCC 1 cut(s) 345
DpnI GATC 2 cut(s) 231, 942
DpnII GATC 2 cut(s) 229, 940
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 2 cut(s) 450, 488
Eco24I GRGCYC 1 cut(s) 783
Eco31I GGTCTC 2 cut(s) 416, 920
Eco47I GGWCC 1 cut(s) 485
Eco88I CYCGRG 2 cut(s) 746, 856
EcoRII CCWGG 2 cut(s) 882, 904
EcoT14I CCWWGG 2 cut(s) 450, 488
EcoT38I GRGCYC 1 cut(s) 783
EgeI GGCGCC 1 cut(s) 345
EheI GGCGCC 1 cut(s) 345
ErhI CCWWGG 2 cut(s) 450, 488
Esp3I CGTCTC 1 cut(s) 433
FaeI CATG 3 cut(s) 435, 454, 631
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 1 cut(s) 922
FatI CATG 3 cut(s) 431, 450, 627
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 5 cut(s) 175, 243, 456, 543, 695
FokI GGATG 1 cut(s) 300
FriOI GRGCYC 1 cut(s) 783
Fsp4HI GCNGC 5 cut(s) 175, 243, 456, 543, 695
FspBI CTAG 1 cut(s) 459
FspI TGCGCA 1 cut(s) 436
GlaI GCGC 2 cut(s) 345, 436
GluI GCNGC 5 cut(s) 175, 243, 456, 543, 695
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 2 cut(s) 612, 781
HapII CCGG 4 cut(s) 114, 166, 642, 999
HhaI GCGC 2 cut(s) 346, 437
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 3 cut(s) 435, 454, 631
Hin6I GCGC 2 cut(s) 344, 435
HinP1I GCGC 2 cut(s) 344, 435
HindIII AAGCTT 1 cut(s) 121
HinfI GANTC 9 cut(s) 7, 67, 188, 386, 407, 464, 604, 749, 814
HpaII CCGG 4 cut(s) 114, 166, 642, 999
HphI GGTGA 4 cut(s) 344, 555, 823, 872
Hpy166II GTNNAC 6 cut(s) 199, 485, 647, 672, 681, 847
Hpy188I TCNGA 3 cut(s) 64, 400, 880
Hpy188III TCNNGA 4 cut(s) 149, 419, 601, 899
Hpy8I GTNNAC 6 cut(s) 199, 485, 647, 672, 681, 847
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 8 cut(s) 220, 275, 427, 521, 577, 669, 762, 775
HpyCH4V TGCA 5 cut(s) 41, 672, 694, 703, 757
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 455, 700
HpyF3I CTNAG 1 cut(s) 798
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 3 cut(s) 435, 454, 631
HspAI GCGC 2 cut(s) 344, 435
KasI GGCGCC 1 cut(s) 343
Kzo9I GATC 2 cut(s) 229, 940
Lsp1109I GCAGC 5 cut(s) 161, 229, 442, 554, 706
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 459
MaeIII GTNAC 2 cut(s) 750, 811
MalI GATC 2 cut(s) 231, 942
MboI GATC 2 cut(s) 229, 940
MboII GAAGA 6 cut(s) 16, 107, 242, 251, 522, 1036
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 2 cut(s) 674, 783
MluCI AATT 4 cut(s) 48, 76, 358, 1027
Mly113I GGCGCC 1 cut(s) 344
MlyI GAGTC 3 cut(s) 197, 758, 808
MmeI TCCRAC 1 cut(s) 95
MseI TTAA 4 cut(s) 15, 966, 981, 1041
MspI CCGG 4 cut(s) 114, 166, 642, 999
MspR9I CCNGG 3 cut(s) 884, 906, 999
MvaI CCWGG 2 cut(s) 884, 906
MwoI GCNNNNNNNGC 3 cut(s) 90, 455, 700
NarI GGCGCC 1 cut(s) 344
NciI CCSGG 1 cut(s) 999
NcoI CCATGG 1 cut(s) 450
NdeII GATC 2 cut(s) 229, 940
NlaIII CATG 3 cut(s) 435, 454, 631
NlaIV GGNNCC 3 cut(s) 231, 345, 781
NmuCI GTSAC 2 cut(s) 750, 811
NsbI TGCGCA 1 cut(s) 436
NspV TTCGAA 1 cut(s) 375
PaeR7I CTCGAG 1 cut(s) 746
PasI CCCWGGG 1 cut(s) 905
PfeI GAWTC 6 cut(s) 7, 67, 386, 407, 464, 604
PflFI GACNNNGTC 1 cut(s) 629
PinAI ACCGGT 1 cut(s) 113
PkrI GCNGC 5 cut(s) 176, 244, 457, 544, 696
PleI GAGTC 3 cut(s) 196, 757, 808
PluTI GGCGCC 1 cut(s) 347
PpsI GAGTC 3 cut(s) 196, 757, 808
Psp6I CCWGG 2 cut(s) 882, 904
PspGI CCWGG 2 cut(s) 882, 904
PspN4I GGNNCC 3 cut(s) 231, 345, 781
PspOMI GGGCCC 1 cut(s) 779
PspPI GGNCC 3 cut(s) 485, 779, 780
PspXI VCTCGAGB 1 cut(s) 746
PstNI CAGNNNCTG 1 cut(s) 700
PsuI RGATCY 1 cut(s) 229
PsyI GACNNNGTC 1 cut(s) 629
RsaI GTAC 1 cut(s) 839
RsaNI GTAC 1 cut(s) 838
SaqAI TTAA 4 cut(s) 15, 966, 981, 1041
SatI GCNGC 5 cut(s) 175, 243, 456, 543, 695
Sau3AI GATC 2 cut(s) 229, 940
Sau96I GGNCC 3 cut(s) 485, 779, 780
ScaI AGTACT 1 cut(s) 839
SchI GAGTC 3 cut(s) 197, 758, 808
ScrFI CCNGG 3 cut(s) 884, 906, 999
SduI GDGCHC 2 cut(s) 674, 783
SfaNI GCATC 1 cut(s) 283
SfoI GGCGCC 1 cut(s) 345
Sfr274I CTCGAG 1 cut(s) 746
SfuI TTCGAA 1 cut(s) 375
SinI GGWCC 1 cut(s) 485
SlaI CTCGAG 1 cut(s) 746
SmlI CTYRAG 2 cut(s) 737, 746
SmoI CTYRAG 2 cut(s) 737, 746
Sse9I AATT 4 cut(s) 48, 76, 358, 1027
SsiI CCGC 1 cut(s) 893
SspDI GGCGCC 1 cut(s) 343
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 3 cut(s) 882, 904, 997
StyI CCWWGG 2 cut(s) 450, 488
TaaI ACNGT 8 cut(s) 220, 275, 427, 521, 577, 669, 762, 775
TaqI TCGA 5 cut(s) 138, 375, 389, 747, 770
TasI AATT 4 cut(s) 48, 76, 358, 1027
TatI WGTACW 1 cut(s) 837
TfiI GAWTC 6 cut(s) 7, 67, 386, 407, 464, 604
Tru1I TTAA 4 cut(s) 15, 966, 981, 1041
Tru9I TTAA 4 cut(s) 15, 966, 981, 1041
TscAI CASTG 3 cut(s) 705, 759, 790
TseFI GTSAC 2 cut(s) 750, 811
TseI GCWGC 5 cut(s) 174, 242, 455, 542, 694
Tsp45I GTSAC 2 cut(s) 750, 811
TspDTI ATGAA 2 cut(s) 17, 251
TspGWI ACGGA 2 cut(s) 245, 741
TspRI CASTG 3 cut(s) 705, 759, 790
Tth111I GACNNNGTC 1 cut(s) 629
VneI GTGCAC 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 1 cut(s) 358
XhoI CTCGAG 1 cut(s) 746
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 1 cut(s) 459
ZrmI AGTACT 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.