Rorug04G0206400

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015981
Physical Location & Seq
Reverse (-)
35893885 .. 35951141
57257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0206400.1

Sequence Viewer

Length: 4620 bp
ATGGCAGCTGAATTTCTGCTCACTTTCGCTGCTGAGGGAATTCTGACCAAGGTGTCTTCACTTGCCTCTCAAGAACTCACTCTTGCATGGGGGTTCAAGGCCGAACTGAAGAAGCTCGGGAATTCCTTATCCATCATTCAAGATTTCTTACACGGGGCTGCCGATCAGAAACCACAAGATCATCAGGGCAAGGCAGTAGAGGAGTGGGTCAAGAAACTGAAAGACATAGCTCACGAGGCAGATGATGTTTTGGATGATTTCAACTATGAAGTTCTCCGGCGCAAAGTGGAACTGCAAAACCACATGAAGAGAAAGGTACTCAACTTCCTTTCTGCCTCTAATCCCCTTTTGTTTCGTCTCAAAATGGCGCATAAGATTAAGAAGATCAATGACTCTTTGGTGGAGCTTAAGAATGAGGCAGCTTTCATCAACTTGGTTGCAAAAAGAAGAGATTCAAGCCCTGGAGGGGAACAGCTGGATCGAGATCAAACGGACCCATTTTTTGAGAAGGATGAAAAGGTTGTTGGTAGGGAGGATGTTGTGTCAAGATTAGTTGAGAGCTTGACCAACTCCAACAATCCGCAGGATCTTTCGGTTATGGCCATTGTTGGAATGGCTGGACTGGGAAAGACGACTTTGGCTAAATCAGTGTACAATGAACCTGCCATAGATACACAATTCCATAAGAAAATATGGGTGTGCGTATCTAATACTTTTGATGTCGATGTGATTTTAAGCCAGATGTTAGAATCTCTAACGAGGCATAATGCAGGAATGAAAAATCGAAGTCCATTGATTGATTCTCTTAAAGATGAGTTGACAGGGAAGAAATATGTTCTTATACTAGATGATGTATGGAGCGAGGATAGATCAAAATGGGAGAGTTTGATGAGTTGTTTATCAAAATTGAATTCTACTCCGGGAAGCAGCATTATCATCACCACCCGCAGTGCCAATGTGGCATCAATTGCTGAAACACTTCCCAGACCTAAACTAAGAAATCTATCAAATGACGAATGTTGGTCCATTTTGAAGCAAAGAGCATTGAATTTGAAGGTGAATGATGTCATTGATGCAGATCGAGAAAGAATTGGGAGGGCGATTGCTGAAAAGTGTGGAGGCATACCCTTAGTGGCAAAGGTTTTGGGAAGCATAATGCGCTCTAAAACTAGTAGAGATGAATGGTTGGCAATTCAAAATAGTGAAATATGGGACCTACCTGAAGAAGATGATAGAATCATGTCGGTATTGAAGTTGAGTTTTAATAACTTGAAGACATCACCTTTGAAGCAATGTTTTGCATATTGCTCAATGTTGAAGAAAGATTTTGAAATTGAAAGAGATAATTTGATCCAACTTTGGATGGCTCAGGGATTGCTCCAGCCTTCAACTGAGAAAAATCATCATGAAATGGAGGATACAGGCAATAAATATTTTTATACTCTATTGAAAAACTCCTTATTTCAAGAGGTAACTGAAGATGGCACTATTACCAAGTACACGATGCACGATCTCGTGCATGATCTTGCAGAAGAAGTATCCAAAAGTGAAAGCTTGACACAAGATTTGAATGATACATGCGAGGTTCGACCTTCAACACTAGAAAACATGTCAGAAGTAACTGTTAGGAGATTGCAATCTCTATTTTCGAATGATCAAGTCTCAGATATCATTTTCTCCAAGTTCAGAGCATTGCGCGTCTTAAATTTACACAGGGCAAATATTCAAGAGTTGCCAATTTCATTTGGCAAGTTGAAGCACTTGAGATATCTAGACGTCTCATATTCAAGAATCAAAGCACTTCCCAAGTCAATAGGCAAGCTCTATAACCTTCAAACATTGAGAATGCAGGAAACTGATTATCTCAATGAGGTTCCAAGGGAAATGCAAAACTTGATCAACTTGAGGCATCTTTATTTTGACGAGACAATGGAATTTCCAGCCGGATTATTGCGGGGATTAACTAATCTCCGAACATTGTCTTACTTTAATGTGGGTAAGGAGATGGGTGTTGGAATTGAGGAATTGGTTGGCTTGAACCACTTGAAAGGTGAATTAATCATTCGTAATCTGGAAAATATAAGGGATGAAGAAGAAGCGAAGAAGGCAAAATTAGAGGACAAGAAAAATGTACTGGAGCTAAGTTATGTATGGGCAAGAAGCAGAAGCAATCCAGAAGGTTTGGAGAGTAGGCCGAGCAGCAACATTAATGACGAGAATGTGCTAGAAGGACTCAAACCACATACCAAGTTGGAGAGCTTGAGCATTGAAAACTTCATGGGTGATAAATTTCCTTCATGGATGATGAGAAACCCTTTGCCTCTCAACAATTTGAAGAAGGTCCTCCTTTTGGGCTGTAGCAAATGCGAAGAACTCCCGATACTAGGCCATCTACCGGATCTTGGACATGTCGAGATTTATGAAATGCATAACCTAAAACGCTTGGGAAGTGAATTTTATGGTTATAATCCTCGTGTGGCTTCACGAGATAAGGAGACAATTGTCTTATTTCCAGCATTGAAAACGTTAAGCATTAGACAATGCGGTGAGCTAACTGAATGGATGGAAGCACCCACAAGTATGACATCGTCAACAACAAGAAAAGTAGTGGTGTTCCCTTGCCTAGAGAAGTTGACTCTCGGGGGTTGTCCCTTATTGAGAAATGCTCCAAGTCATTTCCCATCTCTCAAGGAGTTGTCGATATGGGGCATGGACAGCGAGAAGCCGATGGCAAGTATATGCAATGAAGTGAGCACTCTGACTTCTCTCGATATAAATAACATCAAGGGGCTTACTTCGCTGTCCTCGGAGATGCTGAAGAGGAACAAGAATCTCACATCTTTGCAGATCTGGAATTGTGATGAGATGATTCGTATTGCTCCAAATGTATTTGGCTGCTGCGCAAATCTTAGGGAGCTGAGCATTCAGTATTGTAAGAAACTGGAGCAGCTAGCCGAGGGTCTAGACACGCTCCCTCTTCTCGAGAAGTTGACCATAAGTCAATGTCCTACTCTAGAGTTCATTCCGATTGACCACGACATGGCATCCCTCCGCGAATTGAAGATTTACGATTGTGATGGATTATCTAGTATTGGCCTACTCGATCACTGCACCTCTCTACAGAAATTGCAGATATGGCGATGTAGAAATCTAACATCCATTCCAATCTCACAGGGCCTTGCCTCTCTCCGCAAATTGGATATTTGGAAGTGTGATGGACTATCTAGTATTGGCATACTCGATCACTGCACCTCTCTACAGGAATTGGAGATATGGGGATGTGGAAATCTAACATCGATTCCAATCTCACAAGGCCTTGCATCTCTCCGCAAATTGGATATTCAAAAGTGTGGGTTAACGGGCCTACCGTGCGGGATTGAAAACTGTCCCTCGCTTCAGACGTTGCGGGTAAGGGAATGCCCCAAGCTAGCATCCATTTCATTTTCTACGGATTTGAATCCACGACTCCAGGAGTTGTCTTTGGATTGCAATGGTCTACCAAATCTTCCAGATTTCCGCAGTTTCACTTCCCTCCGTGAATTGAATATTTACAGCTGTGGTGGGTTAACGGGCCTACCGTGCGGGATTGAAAACTGCACCTCTCTTCAGGAATTAATGATATCCGGTTTCTCAAGTCTAGAGACCATTTCGTTTACACGTGTCCTCCCATCTCTCCTCAAATTGCAAGTTTACAGCTGCGATGAATTATCTTGCTTGCCTGTCCTCGAATACTGTCCCTCGCTTCAGGAATTGAGTGTAAGCCAATGCCCCAAGCTGGCATCCATTTCATTTTCTGCGGATTTGAATTCATGTCTTAAGGAGATGCGTATATATGATTGCAATGGTCTACAATCCCTTCCAGATTTCCGCAGTTTCACATCCCTCCTTGTATTGGAGATTGGAAAATGTGCGGGTCTGGTATGTGGGTTTCATATCCCGGTGTCTCTGGAGGAGTTGCGGATTTCTCAATGCCATAACCTAGAGAGTATTCCATGTTTAGAGGAAAGCACATCCCTCCGTCAGTTAGGGGTTCGGGATTGTGAGAAATTGAAGTCTCTCTCAACAGGGCTGCGCTGCCTCGCTCGTCTCGAGAAATTGGATTTAGGTCCTTTTTGGGAGGAGCTCGACTCCTTCCCAGATTTTCAAGCTCCATCACAACAACTTGGCAGATTAGCGTTGGGCGGGTGGCCTAAACTCAAGTCTCTTCCTCAACAAGTTCAACACTTCACTTCGCTGACAGAGTTGACTATAAGATCTTTTAATGGAGTGGAGGCTTTACCAGAGTGGTTGGGCAACCTTGCATCTCTCAAGGAACTGACTATTTCGGATTGTGAGAATCTCAAGTATCTACCTTCACTCAAAGCAATGCAACGCCTCACCAAATTAAAGGTTCTACGAATTCGTAGGTGTCCATTTCTAAAGGAAAGATGCACCAAGGACAGCGGCGAAGAATGGCCCAAGATTTCTCACATTCCATATACCTATCTTTTTTTTCACCAGGCTTTCTCCTCTGCTCAAATGGAAGAACAAGTTGCACAACTGATGTACACTAGGACAAACCTGGTGATATATGTGCTGGATTTACTGATCGAGGCATTGCTTCTGAAGAAGTTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

1539

Amino Acids

173.87

Weight (kDa)

6.07

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 14 - 101 1.1e-20 Rx N-terminal domain
NB-ARC PF00931 178 - 350 6.1e-36 NB-ARC domain
NACHT PF05729 199 - 339 7.2e-06 NACHT domain
WHD_DRP PF23559 440 - 510 1.1e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 548 - 816 1.9e-30 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 673 - 809 4.9e-33 R13L1/DRL21 LRRs
LRR_RPS2 PF23247 942 - 1072 6e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_14 PF23598 1399 - 1495 4e-07 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1406 - 1464 2.2e-09 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16270
fragaria_vesca FvH4_4g20220
malus_domestica MD13G1150600.v1.1 MD16G1150800.v1.1 MD16G1150900.v1.1
prunus_persica Prupe.1G114700_v2.0.a1
pyrus_communis pycom13g12940
rosa_chinensis RchiOBHm_Chr4g0425811
rosa_laevigata RLG00000007338
rosa_multiflora Rmu_sc0007063.1_g000002
rosa_roxburghii Rroxscaffold_5G00367800
rosa_rugosa Rorug04G0206400
rosa_samantha Rh4CG281900 Rh4DG265900
rosa_wichuraiana Rw4G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2466, 4618
AasI GACNNNNNNGTC 1 cut(s) 52
AatII GACGTC 1 cut(s) 1779
Acc16I TGCGCA 1 cut(s) 2902
Acc36I ACCTGC 1 cut(s) 670
AccB7I CCANNNNNTGG 1 cut(s) 3040
AccI GTMKAC 2 cut(s) 3496, 3847
AccII CGCG 2 cut(s) 1698, 3054
AclI AACGTT 1 cut(s) 2525
AclWI GGATC 4 cut(s) 486, 594, 1345, 2406
AcoI YGGCCR 1 cut(s) 600
AcuI CTGAAG 7 cut(s) 128, 1242, 1497, 2837, 3380, 3590, 3728
AcvI CACGTG 1 cut(s) 3659
AcyI GRCGYC 1 cut(s) 1776
AfaI GTAC 5 cut(s) 318, 653, 1499, 2133, 4547
AflII CTTAAG 2 cut(s) 407, 3815
AflIII ACRYGT 4 cut(s) 1608, 2407, 3656, 3658
AhdI GACNNNNNGTC 1 cut(s) 2997
AhlI ACTAGT 1 cut(s) 1169
AjnI CCWGG 4 cut(s) 460, 3468, 4497, 4560
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
Alw21I GWGCWC 2 cut(s) 2756, 4125
AlwI GGATC 4 cut(s) 486, 594, 1345, 2406
Ama87I CYCGRG 4 cut(s) 116, 2639, 2981, 4088
ArsI GACNNNNNNTTYG 6 cut(s) 485, 517, 1267, 1299, 1549, 1581
AseI ATTAAT 3 cut(s) 2057, 2208, 3614
Asp700I GAANNNNTTC 2 cut(s) 451, 978
AspLEI GCGC 6 cut(s) 282, 370, 1161, 1698, 2903, 4074
AspS9I GGNCC 9 cut(s) 493, 1023, 1213, 2341, 3175, 3361, 3571, 4106, 4455
AsuC2I CCSGG 2 cut(s) 921, 3938
AsuHPI GGTGA 9 cut(s) 931, 1069, 1272, 2063, 2294, 2558, 4369, 4487, 4576
AsuII TTCGAA 1 cut(s) 1649
AsuNHI GCTAGC 2 cut(s) 2950, 3427
AvaI CYCGRG 4 cut(s) 116, 2639, 2981, 4088
AvaII GGWCC 5 cut(s) 493, 1023, 1213, 2341, 4106
BalI TGGCCA 1 cut(s) 602
BanII GRGCYC 1 cut(s) 4125
BauI CACGAG 4 cut(s) 233, 1514, 2472, 2484
BbrPI CACGTG 1 cut(s) 3659
BbsI GAAGAC 2 cut(s) 48, 1280
Bbv12I GWGCWC 2 cut(s) 2756, 4125
BbvCI CCTCAGC 1 cut(s) 33
BciT130I CCWGG 4 cut(s) 462, 3470, 4499, 4562
BciVI GTATCC 2 cut(s) 1411, 1549
BclI TGATCA 2 cut(s) 1654, 1896
BcnI CCSGG 2 cut(s) 921, 3938
BcuI ACTAGT 1 cut(s) 1169
BfmI CTRYAG 3 cut(s) 2356, 3119, 3257
BfrI CTTAAG 2 cut(s) 407, 3815
BfuAI ACCTGC 1 cut(s) 670
BfuI GTATCC 2 cut(s) 1411, 1549
BglI GCCNNNNNGGC 1 cut(s) 959
BglII AGATCT 2 cut(s) 2847, 4253
BlpI GCTNAGC 1 cut(s) 2918
Bme1390I CCNGG 6 cut(s) 462, 921, 3470, 3938, 4499, 4562
Bme18I GGWCC 5 cut(s) 493, 1023, 1213, 2341, 4106
BmeRI GACNNNNNGTC 1 cut(s) 2997
BmeT110I CYCGRG 4 cut(s) 116, 2639, 2981, 4088
BmgT120I GGNCC 9 cut(s) 493, 1023, 1213, 2341, 3175, 3361, 3571, 4106, 4455
BmiI GGNNCC 3 cut(s) 495, 1214, 1875
BmrFI CCNGG 6 cut(s) 462, 921, 3470, 3938, 4499, 4562
BmrI ACTGGG 1 cut(s) 632
BmtI GCTAGC 2 cut(s) 2954, 3431
BmuI ACTGGG 1 cut(s) 632
BoxI GACNNNNGTC 1 cut(s) 2501
BpiI GAAGAC 2 cut(s) 48, 1280
BplI GAGNNNNNCTC 4 cut(s) 2650, 2682, 4112, 4144
BpmI CTGGAG 6 cut(s) 483, 1364, 2156, 2963, 3452, 3968
Bpu10I CCTNAGC 2 cut(s) 33, 1368
Bpu1102I GCTNAGC 1 cut(s) 2918
Bpu14I TTCGAA 1 cut(s) 1649
BpuEI CTTGAG 9 cut(s) 54, 1783, 1924, 2281, 2672, 3616, 4181, 4292, 4325
BpuMI CCSGG 2 cut(s) 921, 3938
Bsa29I ATCGAT 1 cut(s) 3296
BsaAI YACGTR 1 cut(s) 3659
BsaBI GATNNNNATC 5 cut(s) 483, 1077, 1636, 3302, 3456
BsaHI GRCGYC 1 cut(s) 1776
BsaI GGTCTC 1 cut(s) 3635
BsaJI CCNNGG 6 cut(s) 48, 460, 1877, 2805, 2955, 4434
BsaWI WCCGGW 2 cut(s) 2395, 3623
BsaXI ACNNNNNCTCC 2 cut(s) 3648, 3678
Bse1I ACTGG 3 cut(s) 627, 2139, 2946
Bse3DI GCAATG 7 cut(s) 1298, 1691, 2749, 3496, 3847, 4371, 4595
Bse8I GATNNNNATC 5 cut(s) 483, 1077, 1636, 3302, 3456
BseBI CCWGG 4 cut(s) 462, 3470, 4499, 4562
BseCI ATCGAT 1 cut(s) 3296
BseDI CCNNGG 6 cut(s) 48, 460, 1877, 2805, 2955, 4434
BseJI GATNNNNATC 5 cut(s) 483, 1077, 1636, 3302, 3456
BseMI GCAATG 7 cut(s) 1298, 1691, 2749, 3496, 3847, 4371, 4595
BseMII CTCAG 5 cut(s) 24, 1382, 1383, 1677, 2909
BseNI ACTGG 3 cut(s) 627, 2139, 2946
BseRI GAGGAG 5 cut(s) 215, 3665, 3965, 4133, 4498
BsgI GTGCAG 3 cut(s) 3094, 3232, 3580
Bsh1236I CGCG 2 cut(s) 1698, 3054
BshVI ATCGAT 1 cut(s) 3296
BsiHKAI GWGCWC 2 cut(s) 2756, 4125
BsiHKCI CYCGRG 4 cut(s) 116, 2639, 2981, 4088
BsiSI CCGG 6 cut(s) 277, 920, 1944, 2396, 3624, 3938
BslFI GGGAC 4 cut(s) 1226, 2634, 3372, 3720
BsmBI CGTCTC 3 cut(s) 362, 1783, 4091
BsmFI GGGAC 4 cut(s) 1226, 2634, 3372, 3720
BsmI GAATGC 3 cut(s) 1851, 2922, 3422
Bso31I GGTCTC 1 cut(s) 3635
BsoBI CYCGRG 4 cut(s) 116, 2639, 2981, 4088
Bsp119I TTCGAA 1 cut(s) 1649
Bsp1286I GDGCHC 2 cut(s) 2756, 4125
Bsp1407I TGTACA 2 cut(s) 651, 4545
Bsp1720I GCTNAGC 1 cut(s) 2918
BspCNI CTCAG 5 cut(s) 25, 1381, 1384, 1676, 2910
BspDI ATCGAT 1 cut(s) 3296
BspFNI CGCG 2 cut(s) 1698, 3054
BspHI TCATGA 1 cut(s) 1405
BspLI GGNNCC 3 cut(s) 495, 1214, 1875
BspMI ACCTGC 1 cut(s) 670
BspOI GCTAGC 2 cut(s) 2954, 3431
BspPI GGATC 4 cut(s) 486, 594, 1345, 2406
BspT104I TTCGAA 1 cut(s) 1649
BspTI CTTAAG 2 cut(s) 407, 3815
BspTNI GGTCTC 1 cut(s) 3635
BsrDI GCAATG 7 cut(s) 1298, 1691, 2749, 3496, 3847, 4371, 4595
BsrGI TGTACA 2 cut(s) 651, 4545
BsrI ACTGG 3 cut(s) 627, 2139, 2946
BssECI CCNNGG 6 cut(s) 48, 460, 1877, 2805, 2955, 4434
BssNI GRCGYC 1 cut(s) 1776
BssSI CACGAG 4 cut(s) 233, 1514, 2472, 2484
BssT1I CCWWGG 3 cut(s) 48, 1877, 4434
Bst2BI CACGAG 4 cut(s) 233, 1514, 2472, 2484
Bst2UI CCWGG 4 cut(s) 462, 3470, 4499, 4562
Bst4CI ACNGT 5 cut(s) 1624, 3369, 3386, 3579, 3734
Bst6I CTCTTC 6 cut(s) 302, 442, 2813, 2982, 3609, 4209
BstACI GRCGYC 1 cut(s) 1776
BstAFI CTTAAG 2 cut(s) 407, 3815
BstAPI GCANNNNNTGC 1 cut(s) 968
BstAUI TGTACA 2 cut(s) 651, 4545
BstBAI YACGTR 1 cut(s) 3659
BstBI TTCGAA 1 cut(s) 1649
BstC8I GCNNGC 5 cut(s) 1820, 2952, 3429, 3716, 3777
BstDEI CTNAG 9 cut(s) 33, 995, 1129, 1368, 1392, 1663, 2141, 2909, 2918
BstFNI CGCG 2 cut(s) 1698, 3054
BstHHI GCGC 6 cut(s) 282, 370, 1161, 1698, 2903, 4074
BstNI CCWGG 4 cut(s) 462, 3470, 4499, 4562
BstNSI RCATGY 3 cut(s) 1581, 1612, 2411
BstPAI GACNNNNGTC 1 cut(s) 2501
BstSCI CCNGG 6 cut(s) 460, 919, 3468, 3936, 4497, 4560
BstSFI CTRYAG 3 cut(s) 2356, 3119, 3257
BstUI CGCG 2 cut(s) 1698, 3054
BstV2I GAAGAC 2 cut(s) 48, 1280
BstX2I RGATCY 4 cut(s) 586, 2398, 2847, 4253
BstYI RGATCY 4 cut(s) 586, 2398, 2847, 4253
Bsu15I ATCGAT 1 cut(s) 3296
BsuI GTATCC 2 cut(s) 1411, 1549
BsuTUI ATCGAT 1 cut(s) 3296
BtgZI GCGATG 2 cut(s) 3154, 3714
BtsI GCAGTG 3 cut(s) 955, 3106, 3244
BtsIMutI CAGTG 4 cut(s) 654, 955, 3106, 3244
BveI ACCTGC 1 cut(s) 670
Cac8I GCNNGC 5 cut(s) 1820, 2952, 3429, 3716, 3777
CciI TCATGA 1 cut(s) 1405
CfoI GCGC 6 cut(s) 282, 370, 1161, 1698, 2903, 4074
Cfr13I GGNCC 9 cut(s) 493, 1023, 1213, 2341, 3175, 3361, 3571, 4106, 4455
ClaI ATCGAT 1 cut(s) 3296
CseI GACGC 1 cut(s) 1687
CsiI ACCWGGT 1 cut(s) 4560
Csp6I GTAC 5 cut(s) 317, 652, 1498, 2132, 4546
CviQI GTAC 5 cut(s) 317, 652, 1498, 2132, 4546
DdeI CTNAG 9 cut(s) 33, 995, 1129, 1368, 1392, 1663, 2141, 2909, 2918
DrdI GACNNNNNNGTC 1 cut(s) 52
DriI GACNNNNNGTC 1 cut(s) 2997
DseDI GACNNNNNNGTC 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 600
Eam1104I CTCTTC 6 cut(s) 302, 442, 2813, 2982, 3609, 4209
Eam1105I GACNNNNNGTC 1 cut(s) 2997
EarI CTCTTC 6 cut(s) 302, 442, 2813, 2982, 3609, 4209
Ecl136II GAGCTC 1 cut(s) 4123
Eco130I CCWWGG 3 cut(s) 48, 1877, 4434
Eco147I AGGCCT 1 cut(s) 3315
Eco24I GRGCYC 1 cut(s) 4125
Eco31I GGTCTC 1 cut(s) 3635
Eco32I GATATC 3 cut(s) 1669, 1769, 3621
Eco47I GGWCC 5 cut(s) 493, 1023, 1213, 2341, 4106
Eco53kI GAGCTC 1 cut(s) 4123
Eco57I CTGAAG 7 cut(s) 128, 1242, 1497, 2837, 3380, 3590, 3728
Eco72I CACGTG 1 cut(s) 3659
Eco88I CYCGRG 4 cut(s) 116, 2639, 2981, 4088
EcoICRI GAGCTC 1 cut(s) 4123
EcoO109I RGGNCCY 4 cut(s) 1213, 2341, 3175, 4106
EcoRI GAATTC 5 cut(s) 39, 121, 910, 3805, 4398
EcoRII CCWGG 4 cut(s) 460, 3468, 4497, 4560
EcoRV GATATC 3 cut(s) 1669, 1769, 3621
EcoT14I CCWWGG 3 cut(s) 48, 1877, 4434
EcoT22I ATGCAT 1 cut(s) 2430
EcoT38I GRGCYC 1 cut(s) 4125
ErhI CCWWGG 3 cut(s) 48, 1877, 4434
Esp3I CGTCTC 3 cut(s) 362, 1783, 4091
FaqI GGGAC 4 cut(s) 1226, 2634, 3372, 3720
FauI CCCGC 7 cut(s) 953, 1947, 3365, 3399, 3575, 3904, 4175
FbaI TGATCA 2 cut(s) 1654, 1896
FblI GTMKAC 2 cut(s) 3496, 3847
FriOI GRGCYC 1 cut(s) 4125
FspI TGCGCA 1 cut(s) 2902
GlaI GCGC 6 cut(s) 281, 369, 1160, 1697, 2902, 4073
GsuI CTGGAG 6 cut(s) 483, 1364, 2156, 2963, 3452, 3968
HapII CCGG 6 cut(s) 277, 920, 1944, 2396, 3624, 3938
HgaI GACGC 1 cut(s) 1687
HhaI GCGC 6 cut(s) 282, 370, 1161, 1698, 2903, 4074
Hin1I GRCGYC 1 cut(s) 1776
Hin6I GCGC 6 cut(s) 280, 368, 1159, 1696, 2901, 4072
HinP1I GCGC 6 cut(s) 280, 368, 1159, 1696, 2901, 4072
HincII GTYRAC 7 cut(s) 819, 2592, 2634, 2991, 3357, 3567, 4245
HindII GTYRAC 7 cut(s) 819, 2592, 2634, 2991, 3357, 3567, 4245
HindIII AAGCTT 1 cut(s) 1552
HpaI GTTAAC 2 cut(s) 3357, 3567
HpaII CCGG 6 cut(s) 277, 920, 1944, 2396, 3624, 3938
HphI GGTGA 9 cut(s) 931, 1069, 1272, 2063, 2294, 2558, 4369, 4487, 4576
HpyCH4III ACNGT 5 cut(s) 1624, 3369, 3386, 3579, 3734
HpyCH4IV ACGT 4 cut(s) 1776, 2525, 3401, 3658
HpyF3I CTNAG 9 cut(s) 33, 995, 1129, 1368, 1392, 1663, 2141, 2909, 2918
HpySE526I ACGT 4 cut(s) 1776, 2525, 3401, 3658
Hsp92I GRCGYC 1 cut(s) 1776
HspAI GCGC 6 cut(s) 280, 368, 1159, 1696, 2901, 4072
Ksp22I TGATCA 2 cut(s) 1654, 1896
KspAI GTTAAC 2 cut(s) 3357, 3567
MabI ACCWGGT 1 cut(s) 4560
MaeII ACGT 4 cut(s) 1776, 2525, 3401, 3658
MaeIII GTNAC 2 cut(s) 1471, 1618
MfeI CAATTG 2 cut(s) 966, 2499
MflI RGATCY 4 cut(s) 586, 2398, 2847, 4253
MhlI GDGCHC 2 cut(s) 2756, 4125
MlsI TGGCCA 1 cut(s) 602
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 5 cut(s) 386, 2226, 2629, 3459, 4121
MmeI TCCRAC 5 cut(s) 589, 597, 1378, 1993, 2232
Mox20I TGGCCA 1 cut(s) 602
Mph1103I ATGCAT 1 cut(s) 2430
MroXI GAANNNNTTC 2 cut(s) 451, 978
MscI TGGCCA 1 cut(s) 602
MslI CAYNNNNRTG 1 cut(s) 2579
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 5 cut(s) 8, 475, 3555, 3696, 4443
MspCI CTTAAG 2 cut(s) 407, 3815
MspI CCGG 6 cut(s) 277, 920, 1944, 2396, 3624, 3938
MspR9I CCNGG 6 cut(s) 462, 921, 3470, 3938, 4499, 4562
MunI CAATTG 2 cut(s) 966, 2499
Mva1269I GAATGC 3 cut(s) 1851, 2922, 3422
MvaI CCWGG 4 cut(s) 462, 3470, 4499, 4562
MvnI CGCG 2 cut(s) 1698, 3054
NciI CCSGG 2 cut(s) 921, 3938
NheI GCTAGC 2 cut(s) 2950, 3427
NlaIV GGNNCC 3 cut(s) 495, 1214, 1875
NmeAIII GCCGAG 2 cut(s) 2220, 2980
NsbI TGCGCA 1 cut(s) 2902
NsiI ATGCAT 1 cut(s) 2430
NspI RCATGY 3 cut(s) 1581, 1612, 2411
NspV TTCGAA 1 cut(s) 1649
PaeR7I CTCGAG 2 cut(s) 2981, 4088
PagI TCATGA 1 cut(s) 1405
PceI AGGCCT 1 cut(s) 3315
PciI ACATGT 2 cut(s) 1608, 2407
PcsI WCGNNNNNNNCGW 5 cut(s) 159, 3365, 3398, 3575, 4086
PctI GAATGC 3 cut(s) 1851, 2922, 3422
PdmI GAANNNNTTC 2 cut(s) 451, 978
PflFI GACNNNGTC 1 cut(s) 2587
PflMI CCANNNNNTGG 1 cut(s) 3040
PfoI TCCNGGA 2 cut(s) 919, 3468
PleI GAGTC 5 cut(s) 386, 2226, 2629, 3459, 4121
PmaCI CACGTG 1 cut(s) 3659
PmlI CACGTG 1 cut(s) 3659
PpsI GAGTC 5 cut(s) 386, 2226, 2629, 3459, 4121
Ppu21I YACGTR 1 cut(s) 3659
PpuMI RGGWCCY 3 cut(s) 1213, 2341, 4106
PscI ACATGT 2 cut(s) 1608, 2407
PshAI GACNNNNGTC 1 cut(s) 2501
PshBI ATTAAT 3 cut(s) 2057, 2208, 3614
PsiI TTATAA 2 cut(s) 2466, 4618
Psp124BI GAGCTC 1 cut(s) 4125
Psp1406I AACGTT 1 cut(s) 2525
Psp5II RGGWCCY 3 cut(s) 1213, 2341, 4106
Psp6I CCWGG 4 cut(s) 460, 3468, 4497, 4560
PspCI CACGTG 1 cut(s) 3659
PspGI CCWGG 4 cut(s) 460, 3468, 4497, 4560
PspN4I GGNNCC 3 cut(s) 495, 1214, 1875
PspPI GGNCC 9 cut(s) 493, 1023, 1213, 2341, 3175, 3361, 3571, 4106, 4455
PspPPI RGGWCCY 3 cut(s) 1213, 2341, 4106
PsrI GAACNNNNNNTAC 2 cut(s) 2364, 2396
PsuI RGATCY 4 cut(s) 586, 2398, 2847, 4253
PsyI GACNNNGTC 1 cut(s) 2587
PvuII CAGCTG 4 cut(s) 8, 475, 3555, 3696
RsaI GTAC 5 cut(s) 318, 653, 1499, 2133, 4547
RsaNI GTAC 5 cut(s) 317, 652, 1498, 2132, 4546
RseI CAYNNNNRTG 1 cut(s) 2579
SacI GAGCTC 1 cut(s) 4125
Sau96I GGNCC 9 cut(s) 493, 1023, 1213, 2341, 3175, 3361, 3571, 4106, 4455
SchI GAGTC 5 cut(s) 386, 2226, 2629, 3459, 4121
ScrFI CCNGG 6 cut(s) 462, 921, 3470, 3938, 4499, 4562
SduI GDGCHC 2 cut(s) 2756, 4125
SexAI ACCWGGT 1 cut(s) 4560
SfcI CTRYAG 3 cut(s) 2356, 3119, 3257
Sfr274I CTCGAG 2 cut(s) 2981, 4088
SfuI TTCGAA 1 cut(s) 1649
SinI GGWCC 5 cut(s) 493, 1023, 1213, 2341, 4106
SlaI CTCGAG 2 cut(s) 2981, 4088
SmiMI CAYNNNNRTG 1 cut(s) 2579
SpeI ACTAGT 1 cut(s) 1169
SseBI AGGCCT 1 cut(s) 3315
SspI AATATT 3 cut(s) 1433, 1723, 3547
SstI GAGCTC 1 cut(s) 4125
StuI AGGCCT 1 cut(s) 3315
StyD4I CCNGG 6 cut(s) 460, 919, 3468, 3936, 4497, 4560
StyI CCWWGG 3 cut(s) 48, 1877, 4434
TaaI ACNGT 5 cut(s) 1624, 3369, 3386, 3579, 3734
TaiI ACGT 4 cut(s) 1779, 2528, 3404, 3661
TatI WGTACW 4 cut(s) 651, 1497, 2131, 4545
TauI GCSGC 1 cut(s) 4446
TscAI CASTG 4 cut(s) 654, 955, 3113, 3251
TspGWI ACGGA 4 cut(s) 506, 3464, 3524, 4007
TspRI CASTG 4 cut(s) 654, 955, 3113, 3251
Tth111I GACNNNGTC 1 cut(s) 2587
Van91I CCANNNNNTGG 1 cut(s) 3040
Vha464I CTTAAG 2 cut(s) 407, 3815
VpaK11BI GGWCC 5 cut(s) 493, 1023, 1213, 2341, 4106
VspI ATTAAT 3 cut(s) 2057, 2208, 3614
XbaI TCTAGA 4 cut(s) 1771, 2962, 3013, 3637
XceI RCATGY 3 cut(s) 1581, 1612, 2411
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XhoI CTCGAG 2 cut(s) 2981, 4088
XmiI GTMKAC 2 cut(s) 3496, 3847
XmnI GAANNNNTTC 2 cut(s) 451, 978
ZraI GACGTC 1 cut(s) 1777
Zsp2I ATGCAT 1 cut(s) 2430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.