FvH4_4g20220

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015981
Physical Location & Seq
Reverse (-)
23560562 .. 23562452
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20220.t1

Sequence Viewer

Length: 1017 bp
ATGGCCATGAAGTACTTGGCTCTTGTTTCGCTGTTGCTCAACCTCGCAGTTGTGTTTTCAACTGTGCCAAAAACCACTAGTGAAGGAGGAGGTTATGGTGATGATTATGGTCATGATCAATCAGGGAATGATGTGTCCAATTTCTGCCCTGAGGCAGAGGCTATAATATTTTCTCGGGTACAAGAGGCAGTGTTGGAGGACTCCAGAATGGCAGCCTCTCTACTTCGGCTCCATTTCCACGACTGCTTTGTCAATGGGTGTGATGCTTCTGTGTTACTAGATGACAGTGCCAACTTTGTGGGTGAAAAAACAGCAGCACCTAACTTGAATTCTCTGCGGGGTTTTGATGTCATTGATGCTATCAAAGCAGACCTTGAAGCTTTTTGCCCCGAAACAGTTTCATGTGCGGACATTCTTGCTACTGCTGCCAGAGACTCGGTTGTTCTGTCTGGTGGACCAAGCTGGGATGTTCAAATGGGAAGGAAGGACAGCTTCACTGCTAGCAAATCATTAGCAAATAAAAATTTACCAGGACCAAATTCCACTGTTGCAAACCTTGTTTCAAAGTTCCAGAATGTAAACCTTAGTCTCAGGGACATGGTTGTGCTCTCTGGTGCACACACAATGGGGAGAGCCAGGTGCACCACCTTCCGCGGGCGCCTACAAGGCGCTATCACAGCAAGTACCCCGGATGCATCCCTTGAGTTCATTCAGTCCCTGCAAGAACTGTGCTCCGGATCAAGCAGCAATGCCACACTGGCCAACCTTGACCTTGCAACCCCGGCAACATTTGACAACCAGTACTATGTTAACCTGCTTTCAGGGCAGGGTTTGCTTCCTTCGGACCAGAATCTGGTGACCGGAGATGATCAGACTCGTGAGCTTGTGGAAACCTATGCAGGGGATGTGGTTGCCTTCTTTGAGGACTTTAAAAACTCCATGATCAAAATGGGAAGCTTGGGGGTGGGGACTGGGATGAATGGGGAGATTCGTAGGCATTGTAGAGCTGTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

339

Amino Acids

36.05

Weight (kDa)

4.73

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 58 - 301 2.2e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16270
fragaria_vesca FvH4_4g20220
malus_domestica MD13G1150600.v1.1 MD16G1150800.v1.1 MD16G1150900.v1.1
prunus_persica Prupe.1G114700_v2.0.a1
pyrus_communis pycom13g12940
rosa_chinensis RchiOBHm_Chr4g0425811
rosa_laevigata RLG00000007338
rosa_multiflora Rmu_sc0007063.1_g000002
rosa_roxburghii Rroxscaffold_5G00367800
rosa_rugosa Rorug04G0206400
rosa_samantha Rh4CG281900 Rh4DG265900
rosa_wichuraiana Rw4G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
Acc36I ACCTGC 1 cut(s) 822
AccB1I GGYRCC 1 cut(s) 657
AccB7I CCANNNNNTGG 1 cut(s) 853
AccII CGCG 1 cut(s) 654
AccIII TCCGGA 1 cut(s) 734
AciI CCGC 4 cut(s) 337, 407, 652, 654
AclWI GGATC 1 cut(s) 745
AcoI YGGCCR 2 cut(s) 3, 759
AcsI RAATTY 3 cut(s) 328, 523, 538
AcyI GRCGYC 1 cut(s) 658
AfaI GTAC 4 cut(s) 14, 180, 685, 803
AfiI CCNNNNNNNGG 3 cut(s) 654, 853, 900
AgsI TTSAA 5 cut(s) 60, 328, 377, 473, 564
AhlI ACTAGT 1 cut(s) 77
AjnI CCWGG 2 cut(s) 529, 635
AluBI AGCT 6 cut(s) 380, 462, 492, 883, 957, 1007
AluI AGCT 6 cut(s) 380, 462, 492, 883, 957, 1007
Alw21I GWGCWC 4 cut(s) 609, 619, 644, 734
Alw26I GTCTC 2 cut(s) 426, 593
Alw44I GTGCAC 2 cut(s) 615, 640
AlwI GGATC 1 cut(s) 745
AlwNI CAGNNNCTG 2 cut(s) 718, 853
Ama87I CYCGRG 1 cut(s) 174
Aor13HI TCCGGA 1 cut(s) 734
AoxI GGCC 2 cut(s) 3, 759
ApaLI GTGCAC 2 cut(s) 615, 640
ApeKI GCWGC 4 cut(s) 212, 314, 425, 744
ApoI RAATTY 3 cut(s) 328, 523, 538
AspLEI GCGC 2 cut(s) 660, 671
AspS9I GGNCC 3 cut(s) 455, 533, 844
AsuC2I CCSGG 2 cut(s) 689, 782
AsuHPI GGTGA 3 cut(s) 110, 314, 868
AsuNHI GCTAGC 1 cut(s) 500
AvaI CYCGRG 1 cut(s) 174
AvaII GGWCC 3 cut(s) 455, 533, 844
AxyI CCTNAGG 1 cut(s) 150
BaeGI GKGCMC 2 cut(s) 619, 644
BalI TGGCCA 2 cut(s) 5, 761
BanI GGYRCC 1 cut(s) 657
BauI CACGAG 1 cut(s) 876
Bbv12I GWGCWC 4 cut(s) 609, 619, 644, 734
BbvI GCAGC 4 cut(s) 224, 326, 412, 756
BciT130I CCWGG 2 cut(s) 531, 637
BclI TGATCA 3 cut(s) 115, 868, 942
BcnI CCSGG 2 cut(s) 689, 782
BcoDI GTCTC 2 cut(s) 426, 593
BcuI ACTAGT 1 cut(s) 77
BfaI CTAG 3 cut(s) 78, 278, 501
BfoI RGCGCY 2 cut(s) 661, 672
BfuAI ACCTGC 1 cut(s) 822
BglI GCCNNNNNGGC 2 cut(s) 666, 758
BisI GCNGC 4 cut(s) 213, 315, 426, 745
BlsI GCNGC 4 cut(s) 214, 316, 427, 746
BmcAI AGTACT 2 cut(s) 14, 803
Bme1390I CCNGG 4 cut(s) 531, 637, 689, 782
Bme18I GGWCC 3 cut(s) 455, 533, 844
BmeT110I CYCGRG 1 cut(s) 174
BmgT120I GGNCC 3 cut(s) 455, 533, 844
BmiI GGNNCC 2 cut(s) 230, 659
BmrFI CCNGG 4 cut(s) 531, 637, 689, 782
BmrI ACTGGG 1 cut(s) 981
BmsI GCATC 4 cut(s) 253, 346, 682, 704
BmtI GCTAGC 1 cut(s) 504
BmuI ACTGGG 1 cut(s) 981
BpmI CTGGAG 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 722
BpuMI CCSGG 2 cut(s) 689, 782
BsaHI GRCGYC 1 cut(s) 658
BsaJI CCNNGG 3 cut(s) 652, 687, 780
BsaWI WCCGGW 2 cut(s) 734, 860
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 3 cut(s) 654, 853, 900
Bse1I ACTGG 3 cut(s) 762, 799, 976
Bse21I CCTNAGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 754
BseAI TCCGGA 1 cut(s) 734
BseBI CCWGG 2 cut(s) 531, 637
BseDI CCNNGG 3 cut(s) 652, 687, 780
BseGI GGATG 5 cut(s) 472, 695, 697, 910, 981
BseLI CCNNNNNNNGG 3 cut(s) 654, 853, 900
BseMI GCAATG 1 cut(s) 754
BseMII CTCAG 2 cut(s) 141, 604
BseNI ACTGG 3 cut(s) 762, 799, 976
BseRI GAGGAG 1 cut(s) 102
BseSI GKGCMC 2 cut(s) 619, 644
BseXI GCAGC 4 cut(s) 224, 326, 412, 756
BseYI CCCAGC 1 cut(s) 462
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 2 cut(s) 5, 761
BshNI GGYRCC 1 cut(s) 657
BsiHKAI GWGCWC 4 cut(s) 609, 619, 644, 734
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 4 cut(s) 689, 735, 782, 861
BslFI GGGAC 3 cut(s) 608, 700, 982
BslI CCNNNNNNNGG 3 cut(s) 654, 853, 900
BsmAI GTCTC 2 cut(s) 426, 593
BsmFI GGGAC 3 cut(s) 608, 700, 982
BsnI GGCC 2 cut(s) 5, 761
BsoBI CYCGRG 1 cut(s) 174
Bsp1286I GDGCHC 4 cut(s) 609, 619, 644, 734
Bsp13I TCCGGA 1 cut(s) 734
Bsp143I GATC 4 cut(s) 115, 737, 868, 942
BspACI CCGC 4 cut(s) 337, 407, 652, 654
BspANI GGCC 2 cut(s) 5, 761
BspCNI CTCAG 2 cut(s) 142, 603
BspEI TCCGGA 1 cut(s) 734
BspFNI CGCG 1 cut(s) 654
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 230, 659
BspMI ACCTGC 1 cut(s) 822
BspOI GCTAGC 1 cut(s) 504
BspPI GGATC 1 cut(s) 745
BspT107I GGYRCC 1 cut(s) 657
BsrDI GCAATG 1 cut(s) 754
BsrI ACTGG 3 cut(s) 762, 799, 976
BssECI CCNNGG 3 cut(s) 652, 687, 780
BssMI GATC 4 cut(s) 115, 737, 868, 942
BssNI GRCGYC 1 cut(s) 658
BssSI CACGAG 1 cut(s) 876
Bst2BI CACGAG 1 cut(s) 876
Bst2UI CCWGG 2 cut(s) 531, 637
Bst4CI ACNGT 5 cut(s) 64, 287, 397, 547, 729
BstACI GRCGYC 1 cut(s) 658
BstAPI GCANNNNNTGC 1 cut(s) 832
BstC8I GCNNGC 2 cut(s) 502, 656
BstDEI CTNAG 3 cut(s) 150, 584, 590
BstDSI CCRYGG 1 cut(s) 652
BstEII GGTNACC 1 cut(s) 856
BstF5I GGATG 5 cut(s) 472, 695, 697, 910, 981
BstFNI CGCG 1 cut(s) 654
BstH2I RGCGCY 2 cut(s) 661, 672
BstHHI GCGC 2 cut(s) 660, 671
BstKTI GATC 4 cut(s) 118, 740, 871, 945
BstMAI GTCTC 2 cut(s) 426, 593
BstMBI GATC 4 cut(s) 115, 737, 868, 942
BstMWI GCNNNNNNNGC 8 cut(s) 365, 425, 666, 677, 758, 782, 823, 832
BstNI CCWGG 2 cut(s) 531, 637
BstPI GGTNACC 1 cut(s) 856
BstSCI CCNGG 4 cut(s) 529, 635, 687, 780
BstSLI GKGCMC 2 cut(s) 619, 644
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 4 cut(s) 224, 326, 412, 756
BstXI CCANNNNNNTGG 1 cut(s) 298
Bsu36I CCTNAGG 1 cut(s) 150
BsuRI GGCC 2 cut(s) 5, 761
BtgI CCRYGG 1 cut(s) 652
BtsCI GGATG 5 cut(s) 472, 695, 697, 910, 981
BtsI GCAGTG 2 cut(s) 195, 495
BtsIMutI CAGTG 5 cut(s) 195, 292, 495, 543, 755
BveI ACCTGC 1 cut(s) 822
Cac8I GCNNGC 2 cut(s) 502, 656
CaiI CAGNNNCTG 2 cut(s) 718, 853
CciI TCATGA 1 cut(s) 112
CfoI GCGC 2 cut(s) 660, 671
Cfr13I GGNCC 3 cut(s) 455, 533, 844
Cfr42I CCGCGG 1 cut(s) 655
Csp6I GTAC 4 cut(s) 13, 179, 684, 802
CviAII CATG 5 cut(s) 7, 113, 402, 598, 940
CviQI GTAC 4 cut(s) 13, 179, 684, 802
DdeI CTNAG 3 cut(s) 150, 584, 590
DinI GGCGCC 1 cut(s) 659
DpnI GATC 4 cut(s) 117, 739, 870, 944
DpnII GATC 4 cut(s) 115, 737, 868, 942
DraI TTTAAA 1 cut(s) 931
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 2 cut(s) 3, 759
Eco47I GGWCC 3 cut(s) 455, 533, 844
Eco81I CCTNAGG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 174
Eco91I GGTNACC 1 cut(s) 856
EcoO65I GGTNACC 1 cut(s) 856
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 529, 635
EcoT22I ATGCAT 1 cut(s) 697
EgeI GGCGCC 1 cut(s) 659
EheI GGCGCC 1 cut(s) 659
FaeI CATG 5 cut(s) 10, 116, 405, 601, 943
FalI AAGNNNNNCTT 4 cut(s) 357, 389, 476, 508
FaqI GGGAC 3 cut(s) 608, 700, 982
FatI CATG 5 cut(s) 6, 112, 401, 597, 939
FauI CCCGC 2 cut(s) 330, 647
FbaI TGATCA 3 cut(s) 115, 868, 942
Fnu4HI GCNGC 4 cut(s) 213, 315, 426, 745
FokI GGATG 5 cut(s) 479, 682, 704, 917, 988
Fsp4HI GCNGC 4 cut(s) 213, 315, 426, 745
FspBI CTAG 3 cut(s) 78, 278, 501
GlaI GCGC 2 cut(s) 659, 670
GluI GCNGC 4 cut(s) 213, 315, 426, 745
GsaI CCCAGC 1 cut(s) 466
GsuI CTGGAG 1 cut(s) 187
HaeII RGCGCY 2 cut(s) 661, 672
HaeIII GGCC 2 cut(s) 5, 761
HapII CCGG 4 cut(s) 689, 735, 782, 861
HhaI GCGC 2 cut(s) 660, 671
Hin1I GRCGYC 1 cut(s) 658
Hin1II CATG 5 cut(s) 10, 116, 405, 601, 943
Hin6I GCGC 2 cut(s) 658, 669
HinP1I GCGC 2 cut(s) 658, 669
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HindIII AAGCTT 2 cut(s) 378, 955
HinfI GANTC 5 cut(s) 200, 434, 850, 874, 988
HpaI GTTAAC 1 cut(s) 811
HpaII CCGG 4 cut(s) 689, 735, 782, 861
HphI GGTGA 3 cut(s) 110, 314, 868
Hpy166II GTNNAC 5 cut(s) 455, 580, 617, 642, 811
Hpy188I TCNGA 2 cut(s) 844, 873
Hpy188III TCNNGA 5 cut(s) 113, 204, 571, 735, 878
Hpy8I GTNNAC 5 cut(s) 455, 580, 617, 642, 811
HpyAV CCTTC 6 cut(s) 77, 474, 478, 658, 849, 925
HpyCH4III ACNGT 5 cut(s) 64, 287, 397, 547, 729
HpyCH4V TGCA 7 cut(s) 551, 617, 642, 695, 721, 776, 899
HpyF10VI GCNNNNNNNGC 8 cut(s) 365, 425, 666, 677, 758, 782, 823, 832
HpyF3I CTNAG 3 cut(s) 150, 584, 590
Hsp92I GRCGYC 1 cut(s) 658
Hsp92II CATG 5 cut(s) 10, 116, 405, 601, 943
HspAI GCGC 2 cut(s) 658, 669
KasI GGCGCC 1 cut(s) 657
Kpn2I TCCGGA 1 cut(s) 734
Ksp22I TGATCA 3 cut(s) 115, 868, 942
KspAI GTTAAC 1 cut(s) 811
KspI CCGCGG 1 cut(s) 655
Kzo9I GATC 4 cut(s) 115, 737, 868, 942
LmnI GCTCC 2 cut(s) 234, 737
Lsp1109I GCAGC 4 cut(s) 224, 326, 412, 756
LweI GCATC 4 cut(s) 253, 346, 682, 704
MaeI CTAG 3 cut(s) 78, 278, 501
MaeIII GTNAC 2 cut(s) 273, 856
MalI GATC 4 cut(s) 117, 739, 870, 944
MboI GATC 4 cut(s) 115, 737, 868, 942
MhlI GDGCHC 4 cut(s) 609, 619, 644, 734
MlsI TGGCCA 2 cut(s) 5, 761
MluCI AATT 5 cut(s) 139, 328, 523, 538, 1012
MluNI TGGCCA 2 cut(s) 5, 761
Mly113I GGCGCC 1 cut(s) 658
MlyI GAGTC 3 cut(s) 194, 428, 868
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 9 cut(s) 53, 80, 83, 145, 151, 178, 190, 226, 916
Mox20I TGGCCA 2 cut(s) 5, 761
Mph1103I ATGCAT 1 cut(s) 697
MroI TCCGGA 1 cut(s) 734
MscI TGGCCA 2 cut(s) 5, 761
MseI TTAA 3 cut(s) 810, 930, 1015
MslI CAYNNNNRTG 1 cut(s) 602
Msp20I TGGCCA 2 cut(s) 5, 761
MspA1I CMGCKG 1 cut(s) 654
MspI CCGG 4 cut(s) 689, 735, 782, 861
MspR9I CCNGG 4 cut(s) 531, 637, 689, 782
MvaI CCWGG 2 cut(s) 531, 637
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 8 cut(s) 365, 425, 666, 677, 758, 782, 823, 832
NarI GGCGCC 1 cut(s) 658
NciI CCSGG 2 cut(s) 689, 782
NdeII GATC 4 cut(s) 115, 737, 868, 942
NheI GCTAGC 1 cut(s) 500
NlaIII CATG 5 cut(s) 10, 116, 405, 601, 943
NlaIV GGNNCC 2 cut(s) 230, 659
NmuCI GTSAC 1 cut(s) 856
NsiI ATGCAT 1 cut(s) 697
PagI TCATGA 1 cut(s) 112
PfeI GAWTC 2 cut(s) 850, 988
PflMI CCANNNNNTGG 1 cut(s) 853
PkrI GCNGC 4 cut(s) 214, 316, 427, 746
PleI GAGTC 3 cut(s) 194, 428, 868
PluTI GGCGCC 1 cut(s) 661
PpsI GAGTC 3 cut(s) 194, 428, 868
Psp6I CCWGG 2 cut(s) 529, 635
PspEI GGTNACC 1 cut(s) 856
PspFI CCCAGC 1 cut(s) 462
PspGI CCWGG 2 cut(s) 529, 635
PspN4I GGNNCC 2 cut(s) 230, 659
PspPI GGNCC 3 cut(s) 455, 533, 844
PstNI CAGNNNCTG 2 cut(s) 718, 853
RsaI GTAC 4 cut(s) 14, 180, 685, 803
RsaNI GTAC 4 cut(s) 13, 179, 684, 802
RseI CAYNNNNRTG 1 cut(s) 602
SacII CCGCGG 1 cut(s) 655
SaqAI TTAA 3 cut(s) 810, 930, 1015
SatI GCNGC 4 cut(s) 213, 315, 426, 745
Sau3AI GATC 4 cut(s) 115, 737, 868, 942
Sau96I GGNCC 3 cut(s) 455, 533, 844
ScaI AGTACT 2 cut(s) 14, 803
SchI GAGTC 3 cut(s) 194, 428, 868
ScrFI CCNGG 4 cut(s) 531, 637, 689, 782
SduI GDGCHC 4 cut(s) 609, 619, 644, 734
SfaNI GCATC 4 cut(s) 253, 346, 682, 704
SfoI GGCGCC 1 cut(s) 659
Sfr303I CCGCGG 1 cut(s) 655
SgrBI CCGCGG 1 cut(s) 655
SinI GGWCC 3 cut(s) 455, 533, 844
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
SpeI ACTAGT 1 cut(s) 77
Sse9I AATT 5 cut(s) 139, 328, 523, 538, 1012
SsiI CCGC 4 cut(s) 337, 407, 652, 654
SspDI GGCGCC 1 cut(s) 657
SspI AATATT 1 cut(s) 168
SspMI CTAG 3 cut(s) 78, 278, 501
StyD4I CCNGG 4 cut(s) 529, 635, 687, 780
TaaI ACNGT 5 cut(s) 64, 287, 397, 547, 729
TasI AATT 5 cut(s) 139, 328, 523, 538, 1012
TatI WGTACW 2 cut(s) 12, 801
TfiI GAWTC 2 cut(s) 850, 988
Tru1I TTAA 3 cut(s) 810, 930, 1015
Tru9I TTAA 3 cut(s) 810, 930, 1015
TscAI CASTG 5 cut(s) 195, 292, 502, 550, 762
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 4 cut(s) 212, 314, 425, 744
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 4 cut(s) 23, 390, 697, 992
TspRI CASTG 5 cut(s) 195, 292, 502, 550, 762
Van91I CCANNNNNTGG 1 cut(s) 853
VneI GTGCAC 2 cut(s) 615, 640
VpaK11BI GGWCC 3 cut(s) 455, 533, 844
XapI RAATTY 3 cut(s) 328, 523, 538
XcmI CCANNNNNNNNNTGG 2 cut(s) 13, 946
XspI CTAG 3 cut(s) 78, 278, 501
ZrmI AGTACT 2 cut(s) 14, 803
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.