MD13G1150600.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015981
Physical Location & Seq
Reverse (-)
11797366 .. 11798748
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1150600.v1.1.491

Sequence Viewer

Length: 1008 bp
ATGGCCATGAACTTAGCTTTGTTTTCACTATTTCTGGGCGTTGCGATTGTTTTTGCAATCGTACCGACAATCATAGGAGGAGGATATGGTGATGAGGATTGTGGTGACCTCTTGGGAAACGATGTGTACAAAGATAGATGCCCAGAGACGGAGGCCATAATATATGCCGGGGTCAGGCTGGCTGTGTTTGAAGACCCAAGAATGGCAGCCTCTCTCCTTCGTCTCCATTTCCACGACTGCTTTGTTAATGGCTGCGATGCTTCAGTGTTGCTAGATGACAATGATAACTTTGTTGGGGAAAAAACAGCAGCGCCTAACTTAAACTCTCTGAGAGGTTTTGAAGTGATTGATGCAATAAAACAGGATCTTGAAATTGTTTGCCCTCAAACAGTTTCCTGTGCTGACATTCTTGCAGTTGCTGCCCGAGACTCCGTTGTTGTGTCTGGTGGACCTAGCTGGGATGTTCAAATGGGAAGGAAGGACAGCTTCACTGCTAGCAAATCGTTAGCAAATAACAACATTCCAGGCCCAAATTCTACTGTTGCAACACTGGTTTCCAAGTTCCAAAATGTAAACCTTAGCTTGAAGGACATGGTTGCACTCTCTGGTGCACACACGATGGGAAAAGCACGCTGCACCACCTTCACTGCCCGCCTACAAGGCTCCACTAATCCAAATGGTCCGGAGGCGTCTCTTGAATACGTTCAGTCGCTGCAGCAGCTGTGCTCAGATTCTGATGGCAACACGCTGGCAAACCTTGACCTAGCAACCCCAGCAACGTTTGATAACCAGTACTATCTTAACCTTCTCTCCGGGGAGGGTTTGCTTCTGTCCGACCAGAATCTCGCAACCGGAGATGATCAAACGCGTGAACTGGTAGAAACCTACGCACAAGACCCGTCCGCCTTCTTCGAAGACTTCAAAGATTCCATGGTAAAAATGGGAAGCTTGGGAGCAGTTACCGCGATGAATGGAGAGATTCGCAGGGACTGTCGAAGTGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

336

Amino Acids

35.88

Weight (kDa)

4.37

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 58 - 299 2.3e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16270
fragaria_vesca FvH4_4g20220
malus_domestica MD13G1150600.v1.1 MD16G1150800.v1.1 MD16G1150900.v1.1
prunus_persica Prupe.1G114700_v2.0.a1
pyrus_communis pycom13g12940
rosa_chinensis RchiOBHm_Chr4g0425811
rosa_laevigata RLG00000007338
rosa_multiflora Rmu_sc0007063.1_g000002
rosa_roxburghii Rroxscaffold_5G00367800
rosa_rugosa Rorug04G0206400
rosa_samantha Rh4CG281900 Rh4DG265900
rosa_wichuraiana Rw4G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 868, 965
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 3 cut(s) 652, 903, 963
AclI AACGTT 1 cut(s) 779
AclWI GGATC 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 689
AfaI GTAC 3 cut(s) 63, 128, 794
AfiI CCNNNNNNNGG 3 cut(s) 148, 174, 202
AflIII ACRYGT 1 cut(s) 866
AgsI TTSAA 7 cut(s) 191, 341, 371, 467, 586, 698, 922
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 6 cut(s) 17, 456, 486, 582, 721, 948
AluI AGCT 6 cut(s) 17, 456, 486, 582, 721, 948
Alw21I GWGCWC 2 cut(s) 613, 728
Alw26I GTCTC 4 cut(s) 140, 227, 420, 696
Alw44I GTGCAC 1 cut(s) 609
AlwI GGATC 1 cut(s) 372
AlwNI CAGNNNCTG 5 cut(s) 419, 712, 721, 734, 990
Ama87I CYCGRG 1 cut(s) 423
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 3 cut(s) 3, 153, 526
ApaLI GTGCAC 1 cut(s) 609
ApeKI GCWGC 8 cut(s) 206, 252, 308, 419, 633, 712, 715, 718
ApoI RAATTY 1 cut(s) 532
Asp700I GAANNNNTTC 1 cut(s) 702
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 3 cut(s) 449, 527, 680
AsuC2I CCSGG 2 cut(s) 169, 814
AsuHPI GGTGA 2 cut(s) 101, 116
AsuII TTCGAA 1 cut(s) 912
AsuNHI GCTAGC 1 cut(s) 494
AvaI CYCGRG 1 cut(s) 423
AvaII GGWCC 2 cut(s) 449, 680
BaeGI GKGCMC 1 cut(s) 613
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 198, 921
Bbv12I GWGCWC 2 cut(s) 613, 728
BbvI GCAGC 8 cut(s) 218, 239, 320, 406, 620, 699, 727, 730
BccI CCATC 2 cut(s) 613, 731
BciT130I CCWGG 1 cut(s) 525
BclI TGATCA 1 cut(s) 859
BcnI CCSGG 2 cut(s) 169, 814
BcoDI GTCTC 4 cut(s) 140, 227, 420, 696
BfaI CTAG 4 cut(s) 272, 453, 495, 764
BfmI CTRYAG 1 cut(s) 713
BfoI RGCGCY 1 cut(s) 314
BglI GCCNNNNNGGC 1 cut(s) 660
BisI GCNGC 8 cut(s) 207, 253, 309, 420, 634, 713, 716, 719
BlsI GCNGC 8 cut(s) 208, 254, 310, 421, 635, 714, 717, 720
BmcAI AGTACT 1 cut(s) 794
Bme1390I CCNGG 3 cut(s) 169, 525, 814
Bme18I GGWCC 2 cut(s) 449, 680
BmeT110I CYCGRG 1 cut(s) 423
BmgT120I GGNCC 3 cut(s) 449, 527, 680
BmiI GGNNCC 1 cut(s) 664
BmrFI CCNGG 3 cut(s) 169, 525, 814
BmsI GCATC 3 cut(s) 128, 247, 340
BmtI GCTAGC 1 cut(s) 498
BpiI GAAGAC 2 cut(s) 198, 921
Bpu10I CCTNAGC 1 cut(s) 578
Bpu14I TTCGAA 1 cut(s) 912
BpuMI CCSGG 2 cut(s) 169, 814
BsaHI GRCGYC 1 cut(s) 689
BsaJI CCNNGG 3 cut(s) 168, 813, 930
BsaWI WCCGGW 2 cut(s) 682, 851
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 174, 202
Bse1I ACTGG 3 cut(s) 555, 790, 879
BseAI TCCGGA 1 cut(s) 682
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 3 cut(s) 168, 813, 930
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 3 cut(s) 148, 174, 202
BseMII CTCAG 2 cut(s) 320, 741
BseNI ACTGG 3 cut(s) 555, 790, 879
BseRI GAGGAG 1 cut(s) 93
BseSI GKGCMC 1 cut(s) 613
BseXI GCAGC 8 cut(s) 218, 239, 320, 406, 620, 699, 727, 730
BseYI CCCAGC 2 cut(s) 456, 772
BsgI GTGCAG 1 cut(s) 619
Bsh1236I CGCG 2 cut(s) 868, 965
BshFI GGCC 3 cut(s) 5, 155, 528
BsiHKAI GWGCWC 2 cut(s) 613, 728
BsiHKCI CYCGRG 1 cut(s) 423
BsiSI CCGG 4 cut(s) 168, 683, 813, 852
BslFI GGGAC 1 cut(s) 1001
BslI CCNNNNNNNGG 3 cut(s) 148, 174, 202
BsmAI GTCTC 4 cut(s) 140, 227, 420, 696
BsmBI CGTCTC 3 cut(s) 140, 227, 696
BsmFI GGGAC 1 cut(s) 1001
BsnI GGCC 3 cut(s) 5, 155, 528
BsoBI CYCGRG 1 cut(s) 423
Bsp119I TTCGAA 1 cut(s) 912
Bsp1286I GDGCHC 2 cut(s) 613, 728
Bsp13I TCCGGA 1 cut(s) 682
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 2 cut(s) 364, 859
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 3 cut(s) 652, 903, 963
BspANI GGCC 3 cut(s) 5, 155, 528
BspCNI CTCAG 2 cut(s) 321, 740
BspEI TCCGGA 1 cut(s) 682
BspFNI CGCG 2 cut(s) 868, 965
BspLI GGNNCC 1 cut(s) 664
BspMAI CTGCAG 1 cut(s) 717
BspOI GCTAGC 1 cut(s) 498
BspPI GGATC 1 cut(s) 372
BspT104I TTCGAA 1 cut(s) 912
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 3 cut(s) 555, 790, 879
BssECI CCNNGG 3 cut(s) 168, 813, 930
BssMI GATC 2 cut(s) 364, 859
BssNI GRCGYC 1 cut(s) 689
BssT1I CCWWGG 1 cut(s) 930
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 3 cut(s) 391, 541, 992
BstACI GRCGYC 1 cut(s) 689
BstAPI GCANNNNNTGC 1 cut(s) 419
BstAUI TGTACA 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 912
BstC8I GCNNGC 5 cut(s) 180, 496, 631, 652, 750
BstDEI CTNAG 4 cut(s) 13, 329, 578, 727
BstDSI CCRYGG 1 cut(s) 930
BstEII GGTNACC 1 cut(s) 104
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 2 cut(s) 868, 965
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 2 cut(s) 367, 862
BstMAI GTCTC 4 cut(s) 140, 227, 420, 696
BstMBI GATC 2 cut(s) 364, 859
BstMWI GCNNNNNNNGC 5 cut(s) 419, 660, 718, 773, 962
BstNI CCWGG 1 cut(s) 525
BstPI GGTNACC 1 cut(s) 104
BstSCI CCNGG 3 cut(s) 167, 523, 812
BstSFI CTRYAG 1 cut(s) 713
BstSLI GKGCMC 1 cut(s) 613
BstUI CGCG 2 cut(s) 868, 965
BstV1I GCAGC 8 cut(s) 218, 239, 320, 406, 620, 699, 727, 730
BstV2I GAAGAC 2 cut(s) 198, 921
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 3 cut(s) 5, 155, 528
BtgI CCRYGG 1 cut(s) 930
BtgZI GCGATG 2 cut(s) 270, 980
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 2 cut(s) 489, 645
BtsIMutI CAGTG 4 cut(s) 270, 489, 548, 645
Cac8I GCNNGC 5 cut(s) 180, 496, 631, 652, 750
CaiI CAGNNNCTG 5 cut(s) 419, 712, 721, 734, 990
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 3 cut(s) 449, 527, 680
CseI GACGC 1 cut(s) 678
Csp6I GTAC 3 cut(s) 62, 127, 793
CviAII CATG 3 cut(s) 7, 592, 931
CviQI GTAC 3 cut(s) 62, 127, 793
DdeI CTNAG 4 cut(s) 13, 329, 578, 727
DpnI GATC 2 cut(s) 366, 861
DpnII GATC 2 cut(s) 364, 859
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 892
Eco130I CCWWGG 1 cut(s) 930
Eco47I GGWCC 2 cut(s) 449, 680
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 423
Eco91I GGTNACC 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 930
ErhI CCWWGG 1 cut(s) 930
Esp3I CGTCTC 3 cut(s) 140, 227, 696
FaeI CATG 3 cut(s) 10, 595, 934
FaiI YATR 8 cut(s) 8, 74, 87, 158, 163, 165, 593, 932
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FaqI GGGAC 1 cut(s) 1001
FatI CATG 3 cut(s) 6, 591, 930
FauI CCCGC 1 cut(s) 659
FbaI TGATCA 1 cut(s) 859
Fnu4HI GCNGC 8 cut(s) 207, 253, 309, 420, 634, 713, 716, 719
FokI GGATG 1 cut(s) 473
Fsp4HI GCNGC 8 cut(s) 207, 253, 309, 420, 634, 713, 716, 719
FspBI CTAG 4 cut(s) 272, 453, 495, 764
GlaI GCGC 1 cut(s) 312
GluI GCNGC 8 cut(s) 207, 253, 309, 420, 634, 713, 716, 719
GsaI CCCAGC 2 cut(s) 460, 776
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 3 cut(s) 5, 155, 528
HapII CCGG 4 cut(s) 168, 683, 813, 852
HgaI GACGC 1 cut(s) 678
HhaI GCGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 689
Hin1II CATG 3 cut(s) 10, 595, 934
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 946
HinfI GANTC 5 cut(s) 428, 731, 841, 926, 979
HpaII CCGG 4 cut(s) 168, 683, 813, 852
HphI GGTGA 2 cut(s) 101, 116
Hpy166II GTNNAC 5 cut(s) 127, 449, 574, 611, 872
Hpy188I TCNGA 4 cut(s) 330, 730, 736, 835
Hpy188III TCNNGA 3 cut(s) 368, 683, 695
Hpy8I GTNNAC 5 cut(s) 127, 449, 574, 611, 872
HpyAV CCTTC 7 cut(s) 227, 468, 472, 580, 652, 815, 916
HpyCH4III ACNGT 3 cut(s) 391, 541, 992
HpyCH4IV ACGT 2 cut(s) 702, 779
HpyCH4V TGCA 8 cut(s) 56, 353, 413, 545, 599, 611, 636, 715
HpyF10VI GCNNNNNNNGC 5 cut(s) 419, 660, 718, 773, 962
HpyF3I CTNAG 4 cut(s) 13, 329, 578, 727
HpySE526I ACGT 2 cut(s) 702, 779
Hsp92I GRCGYC 1 cut(s) 689
Hsp92II CATG 3 cut(s) 10, 595, 934
HspAI GCGC 1 cut(s) 311
Kpn2I TCCGGA 1 cut(s) 682
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 2 cut(s) 364, 859
LmnI GCTCC 2 cut(s) 668, 953
Lsp1109I GCAGC 8 cut(s) 218, 239, 320, 406, 620, 699, 727, 730
LweI GCATC 3 cut(s) 128, 247, 340
MaeI CTAG 4 cut(s) 272, 453, 495, 764
MaeII ACGT 2 cut(s) 702, 779
MaeIII GTNAC 2 cut(s) 104, 958
MalI GATC 2 cut(s) 366, 861
MboI GATC 2 cut(s) 364, 859
MboII GAAGA 3 cut(s) 203, 901, 926
MfeI CAATTG 1 cut(s) 1003
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 613, 728
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 372, 532, 1003
MluI ACGCGT 1 cut(s) 866
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 858
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 682
MroXI GAANNNNTTC 1 cut(s) 702
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 246, 320, 801
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 721
MspI CCGG 4 cut(s) 168, 683, 813, 852
MspR9I CCNGG 3 cut(s) 169, 525, 814
MunI CAATTG 1 cut(s) 1003
MvaI CCWGG 1 cut(s) 525
MvnI CGCG 2 cut(s) 868, 965
MwoI GCNNNNNNNGC 5 cut(s) 419, 660, 718, 773, 962
NciI CCSGG 2 cut(s) 169, 814
NcoI CCATGG 1 cut(s) 930
NdeII GATC 2 cut(s) 364, 859
NheI GCTAGC 1 cut(s) 494
NlaIII CATG 3 cut(s) 10, 595, 934
NlaIV GGNNCC 1 cut(s) 664
NmuCI GTSAC 1 cut(s) 104
NspV TTCGAA 1 cut(s) 912
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 4 cut(s) 731, 841, 926, 979
PkrI GCNGC 8 cut(s) 208, 254, 310, 421, 635, 714, 717, 720
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
Psp1406I AACGTT 1 cut(s) 779
Psp6I CCWGG 1 cut(s) 523
PspEI GGTNACC 1 cut(s) 104
PspFI CCCAGC 2 cut(s) 456, 772
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 664
PspPI GGNCC 3 cut(s) 449, 527, 680
PstI CTGCAG 1 cut(s) 717
PstNI CAGNNNCTG 5 cut(s) 419, 712, 721, 734, 990
PsuI RGATCY 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 721
RsaI GTAC 3 cut(s) 63, 128, 794
RsaNI GTAC 3 cut(s) 62, 127, 793
SaqAI TTAA 3 cut(s) 246, 320, 801
SatI GCNGC 8 cut(s) 207, 253, 309, 420, 634, 713, 716, 719
Sau3AI GATC 2 cut(s) 364, 859
Sau96I GGNCC 3 cut(s) 449, 527, 680
ScaI AGTACT 1 cut(s) 794
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 3 cut(s) 169, 525, 814
SduI GDGCHC 2 cut(s) 613, 728
SfaNI GCATC 3 cut(s) 128, 247, 340
SfcI CTRYAG 1 cut(s) 713
SfuI TTCGAA 1 cut(s) 912
SinI GGWCC 2 cut(s) 449, 680
Sse9I AATT 3 cut(s) 372, 532, 1003
SsiI CCGC 3 cut(s) 652, 903, 963
SspMI CTAG 4 cut(s) 272, 453, 495, 764
StyD4I CCNGG 3 cut(s) 167, 523, 812
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 3 cut(s) 391, 541, 992
TaiI ACGT 2 cut(s) 705, 782
TaqI TCGA 2 cut(s) 912, 994
TasI AATT 3 cut(s) 372, 532, 1003
TatI WGTACW 2 cut(s) 126, 792
TfiI GAWTC 4 cut(s) 731, 841, 926, 979
Tru1I TTAA 3 cut(s) 246, 320, 801
Tru9I TTAA 3 cut(s) 246, 320, 801
TscAI CASTG 4 cut(s) 270, 496, 555, 652
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 8 cut(s) 206, 252, 308, 419, 633, 712, 715, 718
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 2 cut(s) 23, 983
TspGWI ACGGA 2 cut(s) 164, 421
TspRI CASTG 4 cut(s) 270, 496, 555, 652
VneI GTGCAC 1 cut(s) 609
VpaK11BI GGWCC 2 cut(s) 449, 680
XapI RAATTY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 937
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 4 cut(s) 272, 453, 495, 764
ZrmI AGTACT 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.