MD16G1150900.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015981
Physical Location & Seq
Reverse (-)
11892520 .. 11892915
396 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1150900.v1.1.491

Sequence Viewer

Length: 309 bp
ATGCTGAAAACCATGGGAGGAGGAGGAGGAGGAGGATATGGAGATGAGGATTGTGGTGACCTCTTGGGAAATGATGTGTACAACAATAGATGCCCGGAAGCAGAGGCCATAATATATGCAGCTGCTGGGGTCAGACCCGATGTGTTTGAAGACCCAAGAATGCCAGCCTCTCTGCTTCGTCTCCATTTCCACGACTGCTTTGCTAATGCATGTTTTCTTGGCTGCGATGCTTCAGCATTGCTAGATGACAATGAGAACATTGTTGGTGAAAAAACAGCAGCGCCTAACTTTAACTCTGAGGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

103

Amino Acids

10.78

Weight (kDa)

4.18

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 99 4.5e-11 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16270
fragaria_vesca FvH4_4g20220
malus_domestica MD13G1150600.v1.1 MD16G1150800.v1.1 MD16G1150900.v1.1
prunus_persica Prupe.1G114700_v2.0.a1
pyrus_communis pycom13g12940
rosa_chinensis RchiOBHm_Chr4g0425811
rosa_laevigata RLG00000007338
rosa_multiflora Rmu_sc0007063.1_g000002
rosa_roxburghii Rroxscaffold_5G00367800
rosa_rugosa Rorug04G0206400
rosa_samantha Rh4CG281900 Rh4DG265900
rosa_wichuraiana Rw4G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 1 cut(s) 80
AgsI TTSAA 1 cut(s) 149
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 4 cut(s) 119, 122, 222, 278
AspLEI GCGC 1 cut(s) 283
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 68, 278
BbsI GAAGAC 1 cut(s) 156
BbvI GCAGC 4 cut(s) 109, 131, 209, 290
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 284
BisI GCNGC 4 cut(s) 120, 123, 223, 279
BlsI GCNGC 4 cut(s) 121, 124, 224, 280
Bme1390I CCNGG 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 2 cut(s) 80, 217
BpiI GAAGAC 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 12
BseMI GCAATG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 288
BseRI GAGGAG 5 cut(s) 33, 36, 39, 42, 45
BseXI GCAGC 4 cut(s) 109, 131, 209, 290
BseYI CCCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 185
BsmBI CGTCTC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 165
BsnI GGCC 1 cut(s) 107
Bsp1407I TGTACA 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 12
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 236
BsrGI TGTACA 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 12
BstEII GGTNACC 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 213
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 93
BstV1I GCAGC 4 cut(s) 109, 131, 209, 290
BstV2I GAAGAC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 12
BtgZI GCGATG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 165
CaiI CAGNNNCTG 1 cut(s) 125
CfoI GCGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 13, 210
CviJI RGCY 4 cut(s) 107, 122, 167, 222
CviKI_1 RGCY 4 cut(s) 107, 122, 167, 222
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 2 cut(s) 16, 213
FaiI YATR 6 cut(s) 14, 39, 110, 115, 117, 211
FatI CATG 2 cut(s) 12, 209
Fnu4HI GCNGC 4 cut(s) 120, 123, 223, 279
Fsp4HI GCNGC 4 cut(s) 120, 123, 223, 279
FspBI CTAG 1 cut(s) 242
GlaI GCGC 1 cut(s) 282
GluI GCNGC 4 cut(s) 120, 123, 223, 279
GsaI CCCAGC 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 95
HhaI GCGC 1 cut(s) 283
Hin1II CATG 2 cut(s) 16, 213
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 68, 278
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 134, 298
Hpy8I GTNNAC 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 119, 209
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 2 cut(s) 16, 213
HspAI GCGC 1 cut(s) 281
LpnPI CCDG 3 cut(s) 108, 111, 177
Lsp1109I GCAGC 4 cut(s) 109, 131, 209, 290
LweI GCATC 2 cut(s) 80, 217
MaeI CTAG 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 1 cut(s) 161
Mph1103I ATGCAT 1 cut(s) 211
MseI TTAA 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 165
NciI CCSGG 1 cut(s) 95
NcoI CCATGG 1 cut(s) 12
NlaIII CATG 2 cut(s) 16, 213
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 1 cut(s) 213
PctI GAATGC 1 cut(s) 165
PkrI GCNGC 4 cut(s) 121, 124, 224, 280
PspEI GGTNACC 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 125
PstNI CAGNNNCTG 1 cut(s) 125
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 4 cut(s) 120, 123, 223, 279
ScrFI CCNGG 1 cut(s) 95
SetI ASST 2 cut(s) 63, 124
SfaNI GCATC 2 cut(s) 80, 217
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 12
TatI WGTACW 1 cut(s) 78
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 4 cut(s) 119, 122, 222, 278
Tsp45I GTSAC 1 cut(s) 56
XceI RCATGY 1 cut(s) 213
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.