MD16G1150800.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015981
Physical Location & Seq
Reverse (-)
11891708 .. 11892156
449 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1150800.v1.1.491

Sequence Viewer

Length: 357 bp
ATGGTTGCACTCTCTGGTGCACATACGATGGGAAAAGCCCGCTGCACCACCTTCACCGCCCGCCTACAAGGCTCCACCACGGCTCTTGAATACATTCAGTTGCTGCGGCAGCTGTGCTCAGAATCCGACATCAACACGCTGGCAAACCTTGACCTTGCAACCCCAGCAACATTTGACGACCAGTACTATCTTAACCTTCTCTCCGGGGAGGGTTTGCTGCTTTCCGACCAGAATATCACGACCAGAGATGATCAAACGCGTGAACTGGTAGAAACCTACGCACAAGACCCGTCCGCCTTCTTCGGAGACTTCAAAGATTCTATGGTAAAAATGGGAAGAGTGGAAGCTTGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

119

Amino Acids

13.12

Weight (kDa)

4.45

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 1 - 96 7.9e-23 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16270
fragaria_vesca FvH4_4g20220
malus_domestica MD13G1150600.v1.1 MD16G1150800.v1.1 MD16G1150900.v1.1
prunus_persica Prupe.1G114700_v2.0.a1
pyrus_communis pycom13g12940
rosa_chinensis RchiOBHm_Chr4g0425811
rosa_laevigata RLG00000007338
rosa_multiflora Rmu_sc0007063.1_g000002
rosa_roxburghii Rroxscaffold_5G00367800
rosa_rugosa Rorug04G0206400
rosa_samantha Rh4CG281900 Rh4DG265900
rosa_wichuraiana Rw4G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 259
AciI CCGC 5 cut(s) 40, 57, 61, 106, 294
AfaI GTAC 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 2 cut(s) 89, 313
AluBI AGCT 2 cut(s) 112, 347
AluI AGCT 2 cut(s) 112, 347
Alw21I GWGCWC 2 cut(s) 22, 119
Alw26I GTCTC 1 cut(s) 300
Alw44I GTGCAC 1 cut(s) 18
AlwNI CAGNNNCTG 1 cut(s) 103
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 42, 103, 109, 217
Asp700I GAANNNNTTC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 22
Bbv12I GWGCWC 2 cut(s) 22, 119
BbvI GCAGC 4 cut(s) 29, 90, 121, 204
BccI CCATC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 96
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 300
BglI GCCNNNNNGGC 1 cut(s) 69
BisI GCNGC 5 cut(s) 43, 104, 107, 110, 218
BlsI GCNGC 5 cut(s) 44, 105, 108, 111, 219
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 78, 204
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bse1I ACTGG 2 cut(s) 181, 270
BseDI CCNNGG 2 cut(s) 78, 204
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 181, 270
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 4 cut(s) 29, 90, 121, 204
BseYI CCCAGC 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 22, 119
BsiSI CCGG 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 22, 119
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 5 cut(s) 40, 57, 61, 106, 294
BspCNI CTCAG 1 cut(s) 131
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 73
BsrI ACTGG 2 cut(s) 181, 270
BssECI CCNNGG 2 cut(s) 78, 204
BssMI GATC 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 331
BstC8I GCNNGC 3 cut(s) 40, 61, 141
BstDEI CTNAG 1 cut(s) 118
BstDSI CCRYGG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 259
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 3 cut(s) 69, 109, 164
BstSCI CCNGG 1 cut(s) 203
BstSLI GKGCMC 1 cut(s) 22
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 4 cut(s) 29, 90, 121, 204
BtgI CCRYGG 1 cut(s) 78
Cac8I GCNNGC 3 cut(s) 40, 61, 141
CaiI CAGNNNCTG 1 cut(s) 103
Csp6I GTAC 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviJI RGCY 5 cut(s) 38, 72, 83, 112, 347
CviKI_1 RGCY 5 cut(s) 38, 72, 83, 112, 347
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 118
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
EciI GGCGGA 1 cut(s) 283
FaiI YATR 2 cut(s) 24, 323
FauI CCCGC 2 cut(s) 47, 68
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 5 cut(s) 43, 104, 107, 110, 218
Fsp4HI GCNGC 5 cut(s) 43, 104, 107, 110, 218
GluI GCNGC 5 cut(s) 43, 104, 107, 110, 218
GsaI CCCAGC 1 cut(s) 167
HapII CCGG 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 2 cut(s) 122, 317
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 20, 263
Hpy188I TCNGA 4 cut(s) 121, 127, 226, 305
Hpy188III TCNNGA 2 cut(s) 86, 238
Hpy8I GTNNAC 2 cut(s) 20, 263
HpyAV CCTTC 3 cut(s) 61, 206, 307
HpyCH4V TGCA 4 cut(s) 8, 20, 45, 158
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 109, 164
HpyF3I CTNAG 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 7 cut(s) 125, 177, 194, 217, 242, 251, 256
Lsp1109I GCAGC 4 cut(s) 29, 90, 121, 204
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 2 cut(s) 292, 348
MhlI GDGCHC 2 cut(s) 22, 119
MluI ACGCGT 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 150, 249
MnlI CCTC 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 1 cut(s) 192
MspA1I CMGCKG 2 cut(s) 42, 112
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 205
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 3 cut(s) 69, 109, 164
NciI CCSGG 1 cut(s) 205
NdeII GATC 1 cut(s) 250
NlaIV GGNNCC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 2 cut(s) 122, 317
PkrI GCNGC 5 cut(s) 44, 105, 108, 111, 219
PspFI CCCAGC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 5 cut(s) 43, 104, 107, 110, 218
Sau3AI GATC 1 cut(s) 250
ScaI AGTACT 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 2 cut(s) 22, 119
SetI ASST 7 cut(s) 53, 114, 150, 156, 198, 278, 349
SsiI CCGC 5 cut(s) 40, 57, 61, 106, 294
StyD4I CCNGG 1 cut(s) 203
TatI WGTACW 1 cut(s) 183
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 2 cut(s) 122, 317
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 4 cut(s) 42, 103, 109, 217
VneI GTGCAC 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.