AT4G16420
MYB Family

Transcriptional adapter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008610
Physical Location & Seq
Reverse (-)
9262621 .. 9266157
3537 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16420.2

Sequence Viewer

Length: 1464 bp
ATGGGTCGCTCTCGAGGGAACTTCCAAAATTTCGAAGACCCTACTCAGAGAACGAGGAAAAAGAAAAATGCGGCTAATGTGGAGAACTTTGAGTCTACTTCTTTGGTACCAGGTGCTGAGGGAGGAGGGAAGTATAACTGCGATTATTGCCAGAAAGACATTACTGGAAAAATTAGGATAAAGTGTGCTGTCTGTCCAGATTTTGATCTCTGTATAGAATGTATGTCTGTTGGAGCAGAGATCACTCCTCACAAATGTGATCACCCATACCGAGTTATGGGAAATCTAACTTTCCCGCTTATTTGTCCTGACTGGAGTGCGGATGATGAAATGCTTCTCCTGGAGGGACTTGAAATTTATGGCTTGGGAAACTGGGCAGAGGTTGCGGAGCACGTGGGAACGAAGAGTAAAGAACAGTGTCTTGAGCACTACAGAAACATCTATTTGAACTCACCATTTTTCCCACTTCCGGATATGTCACATGTAGCAGGGAAGAACAGAAAAGAACTTCAAGCCATGGCTAAAGGACGCATTGATGACAAGAAAGCAGAGCAGAACATGAAAGAAGAGTACCCGTTCTCTCCTCCTAAAGTCAAAGTTGAAGACACACAAAAAGAGTCTTTTGTAGACAGAAGTTTTGGAGGGAAGAAACCTGTTTCCACCTCGGTAAACAACTCTTTGGTTGAGCTGAGTAATTACAACCAGAAAAGAGAAGAGTTTGACCCTGAATATGACAATGATGCTGAGCAACTCTTGGCGGAGATGGAGTTCAAAGAGAACGATACTCCTGAAGAACATGAACTGAAGCTGCGTGTGTTGCGTATCTATTCAAAAAGGCTTGATGAGAGGAAACGTAGAAAAGAATTCATAATAGAAAGAAACCTGTTGTACCCAAATCCCTTTGAGAAGGACCTGTCTCAGGAGGAGAAAGTACAATGCCGACGTTTGGACGTTTTTATGCGTTTTCATTCAAAAGAGGAGCACGACGAGCTACTCCGTAATGTTGTAAGCGAGTACCGCATGGTGAAACGGCTCAAAGATCTCAAGGAAGCTCAAGTGGCAGGGTGTCGTTCAACGGCTGAAGCAGAGAGGTATCTGGGAAGGAAGAGGAAGAGAGAAAACGAAGAAGGGATGAACAGAGGGAAAGAGAGCGGTCAATTTGGTCAAATTGCAGGGGAGATGGGCTCTAGACCACCTGTGCAAGCTTCTTCAAGCTATGTGAATGATTTGGACTTGATTGGGTTCACGGAGTCGCAACTGCTGTCTGAATCCGAGAAGCGTCTCTGCAGCGAGGTCAAGTTGGTTCCACCGGTTTATCTACAGATGCAACAAGTGATGTCACATGAGATATTCAAAGGGAATGTAACGAAGAAGTCGGATGCATATAGCCTTTTCAAGATTGATCCAACCAAAGTGGATCGAGTTTATGATATGCTTGTGAAGAAGGGTATTGCTCAACTTTAA

Protein Analysis

487

Amino Acids

56.19

Weight (kDa)

6.25

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZZ PF00569 44 - 77 8.3e-08 Zinc finger, ZZ type
ZZ_ADA2 PF25299 47 - 93 1.6e-13 ADA2 ZZ-type zing finger
Myb_DNA-binding PF00249 104 - 146 6.2e-12 Myb-like DNA-binding domain
TADA2A-like_3rd PF22941 227 - 298 2.2e-26 Transcriptional adapter 2-alpha-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 106
AccBSI CCGCTC 1 cut(s) 1152
AccI GTMKAC 2 cut(s) 95, 627
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 7 cut(s) 71, 296, 320, 386, 758, 1018, 1152
AclWI GGATC 2 cut(s) 1397, 1425
AcsI RAATTY 3 cut(s) 28, 354, 863
AcuI CTGAAG 3 cut(s) 810, 824, 1101
AcvI CACGTG 1 cut(s) 394
AfaI GTAC 5 cut(s) 108, 572, 890, 933, 1016
AfiI CCNNNNNNNGG 4 cut(s) 277, 469, 919, 946
AflIII ACRYGT 1 cut(s) 481
AgeI ACCGGT 1 cut(s) 1309
AjnI CCWGG 2 cut(s) 109, 339
AleI CACNNNNGTG 1 cut(s) 255
AloI GAACNNNNNNTCC 2 cut(s) 752, 784
AluBI AGCT 6 cut(s) 688, 808, 991, 1052, 1205, 1215
AluI AGCT 6 cut(s) 688, 808, 991, 1052, 1205, 1215
Alw21I GWGCWC 3 cut(s) 393, 429, 984
Alw26I GTCTC 2 cut(s) 921, 1286
AlwI GGATC 2 cut(s) 1397, 1425
AlwNI CAGNNNCTG 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 469
ApeKI GCWGC 2 cut(s) 808, 1287
ApoI RAATTY 3 cut(s) 28, 354, 863
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AsiGI ACCGGT 1 cut(s) 1309
Asp700I GAANNNNTTC 1 cut(s) 333
Asp718I GGTACC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 910
AsuHPI GGTGA 3 cut(s) 254, 444, 1036
AsuII TTCGAA 1 cut(s) 33
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 1 cut(s) 910
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 1187
BbrPI CACGTG 1 cut(s) 394
BbsI GAAGAC 2 cut(s) 42, 609
Bbv12I GWGCWC 3 cut(s) 393, 429, 984
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 795, 1299
BccI CCATC 2 cut(s) 757, 1174
BceAI ACGGC 2 cut(s) 1046, 1092
BciT130I CCWGG 2 cut(s) 111, 341
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 2 cut(s) 921, 1286
BfaI CTAG 1 cut(s) 1188
BfmI CTRYAG 3 cut(s) 430, 1285, 1319
BglII AGATCT 1 cut(s) 1039
BisI GCNGC 3 cut(s) 72, 809, 1288
BlpI GCTNAGC 1 cut(s) 744
BlsI GCNGC 3 cut(s) 73, 810, 1289
Bme1390I CCNGG 2 cut(s) 111, 341
Bme18I GGWCC 1 cut(s) 910
BmeT110I CYCGRG 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 910
BmiI GGNNCC 2 cut(s) 108, 1305
BmrFI CCNGG 2 cut(s) 111, 341
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 3 cut(s) 730, 1314, 1369
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 42, 609
BplI GAGNNNNNCTC 2 cut(s) 1169, 1201
BpmI CTGGAG 2 cut(s) 334, 362
Bpu10I CCTNAGC 1 cut(s) 117
Bpu1102I GCTNAGC 1 cut(s) 744
Bpu14I TTCGAA 1 cut(s) 33
BpuEI CTTGAG 3 cut(s) 443, 1028, 1038
BsaAI YACGTR 1 cut(s) 394
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 516, 663
BsaWI WCCGGW 2 cut(s) 469, 1309
BsaXI ACNNNNNCTCC 2 cut(s) 752, 782
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 469, 919, 946
Bse118I RCCGGY 1 cut(s) 1309
Bse1I ACTGG 3 cut(s) 169, 317, 377
Bse8I GATNNNNATC 1 cut(s) 204
BseAI TCCGGA 1 cut(s) 469
BseBI CCWGG 2 cut(s) 111, 341
BseDI CCNNGG 2 cut(s) 516, 663
BseGI GGATG 3 cut(s) 328, 1137, 1384
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 4 cut(s) 277, 469, 919, 946
BseMII CTCAG 5 cut(s) 59, 108, 680, 735, 932
BseNI ACTGG 3 cut(s) 169, 317, 377
BseRI GAGGAG 5 cut(s) 138, 237, 573, 938, 992
BseXI GCAGC 2 cut(s) 795, 1299
BshNI GGYRCC 1 cut(s) 106
BshTI ACCGGT 1 cut(s) 1309
BsiHKAI GWGCWC 3 cut(s) 393, 429, 984
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 2 cut(s) 470, 1310
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 4 cut(s) 277, 469, 919, 946
BsmAI GTCTC 2 cut(s) 921, 1286
BsmBI CGTCTC 1 cut(s) 1286
BsmFI GGGAC 1 cut(s) 360
BsoBI CYCGRG 1 cut(s) 12
Bsp119I TTCGAA 1 cut(s) 33
Bsp1286I GDGCHC 4 cut(s) 393, 429, 984, 1187
Bsp13I TCCGGA 1 cut(s) 469
Bsp143I GATC 6 cut(s) 205, 240, 259, 1039, 1402, 1417
Bsp1720I GCTNAGC 1 cut(s) 744
Bsp19I CCATGG 1 cut(s) 516
BspACI CCGC 7 cut(s) 71, 296, 320, 386, 758, 1018, 1152
BspCNI CTCAG 5 cut(s) 58, 109, 681, 736, 931
BspEI TCCGGA 1 cut(s) 469
BspLI GGNNCC 2 cut(s) 108, 1305
BspMAI CTGCAG 1 cut(s) 1289
BspPI GGATC 2 cut(s) 1397, 1425
BspT104I TTCGAA 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 1152
BsrFI RCCGGY 1 cut(s) 1309
BsrI ACTGG 3 cut(s) 169, 317, 377
BssAI RCCGGY 1 cut(s) 1309
BssECI CCNNGG 2 cut(s) 516, 663
BssMI GATC 6 cut(s) 205, 240, 259, 1039, 1402, 1417
BssT1I CCWWGG 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 111, 341
Bst4CI ACNGT 1 cut(s) 417
Bst6I CTCTTC 5 cut(s) 398, 561, 708, 1100, 1106
BstAPI GCANNNNNTGC 1 cut(s) 383
BstBAI YACGTR 1 cut(s) 394
BstBI TTCGAA 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 1203
BstDEI CTNAG 5 cut(s) 45, 117, 689, 744, 918
BstDSI CCRYGG 1 cut(s) 516
BstENI CCTNNNNNAGG 1 cut(s) 917
BstF5I GGATG 3 cut(s) 328, 1137, 1384
BstKTI GATC 6 cut(s) 208, 243, 262, 1042, 1405, 1420
BstMAI GTCTC 2 cut(s) 921, 1286
BstMBI GATC 6 cut(s) 205, 240, 259, 1039, 1402, 1417
BstMWI GCNNNNNNNGC 6 cut(s) 147, 383, 817, 988, 1017, 1058
BstNI CCWGG 2 cut(s) 111, 341
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 2 cut(s) 109, 339
BstSFI CTRYAG 3 cut(s) 430, 1285, 1319
BstV1I GCAGC 2 cut(s) 795, 1299
BstV2I GAAGAC 2 cut(s) 42, 609
BstX2I RGATCY 1 cut(s) 1039
BstYI RGATCY 1 cut(s) 1039
BtgI CCRYGG 1 cut(s) 516
BtsCI GGATG 3 cut(s) 328, 1137, 1384
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 1203
CaiI CAGNNNCTG 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 1309
Cfr13I GGNCC 1 cut(s) 910
CseI GACGC 2 cut(s) 537, 1268
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 5 cut(s) 107, 571, 889, 932, 1015
CspAI ACCGGT 1 cut(s) 1309
CspCI CAANNNNNGTGG 2 cut(s) 1395, 1430
CviAII CATG 6 cut(s) 482, 517, 559, 797, 1021, 1343
CviQI GTAC 5 cut(s) 107, 571, 889, 932, 1015
DdeI CTNAG 5 cut(s) 45, 117, 689, 744, 918
DpnI GATC 6 cut(s) 207, 242, 261, 1041, 1404, 1419
DpnII GATC 6 cut(s) 205, 240, 259, 1039, 1402, 1417
Eam1104I CTCTTC 5 cut(s) 398, 561, 708, 1100, 1106
EarI CTCTTC 5 cut(s) 398, 561, 708, 1100, 1106
EciI GGCGGA 1 cut(s) 773
Eco130I CCWWGG 1 cut(s) 516
Eco24I GRGCYC 1 cut(s) 1187
Eco47I GGWCC 1 cut(s) 910
Eco57I CTGAAG 3 cut(s) 810, 824, 1101
Eco72I CACGTG 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 12
EcoNI CCTNNNNNAGG 1 cut(s) 917
EcoO109I RGGNCCY 1 cut(s) 910
EcoRI GAATTC 1 cut(s) 863
EcoRII CCWGG 2 cut(s) 109, 339
EcoT14I CCWWGG 1 cut(s) 516
EcoT22I ATGCAT 1 cut(s) 1384
EcoT38I GRGCYC 1 cut(s) 1187
ErhI CCWWGG 1 cut(s) 516
Esp3I CGTCTC 1 cut(s) 1286
FaeI CATG 6 cut(s) 485, 520, 562, 800, 1024, 1346
FaqI GGGAC 1 cut(s) 360
FatI CATG 6 cut(s) 481, 516, 558, 796, 1020, 1342
FauI CCCGC 1 cut(s) 303
FbaI TGATCA 1 cut(s) 259
FblI GTMKAC 2 cut(s) 95, 627
Fnu4HI GCNGC 3 cut(s) 72, 809, 1288
FokI GGATG 3 cut(s) 335, 1144, 1391
FriOI GRGCYC 1 cut(s) 1187
Fsp4HI GCNGC 3 cut(s) 72, 809, 1288
FspBI CTAG 1 cut(s) 1188
GluI GCNGC 3 cut(s) 72, 809, 1288
GsuI CTGGAG 2 cut(s) 334, 362
HapII CCGG 2 cut(s) 470, 1310
HgaI GACGC 2 cut(s) 537, 1268
Hin1II CATG 6 cut(s) 485, 520, 562, 800, 1024, 1346
HindIII AAGCTT 1 cut(s) 1203
HinfI GANTC 4 cut(s) 92, 617, 1250, 1268
HpaII CCGG 2 cut(s) 470, 1310
HphI GGTGA 3 cut(s) 254, 444, 1036
Hpy166II GTNNAC 4 cut(s) 96, 628, 670, 1245
Hpy188I TCNGA 4 cut(s) 48, 1267, 1273, 1378
Hpy188III TCNNGA 9 cut(s) 12, 197, 308, 422, 470, 788, 920, 1188, 1396
Hpy8I GTNNAC 4 cut(s) 96, 628, 670, 1245
Hpy99I CGWCG 2 cut(s) 945, 989
HpyAV CCTTC 4 cut(s) 901, 1095, 1121, 1438
HpyCH4III ACNGT 1 cut(s) 417
HpyCH4IV ACGT 4 cut(s) 393, 853, 943, 951
HpyCH4V TGCA 5 cut(s) 1172, 1201, 1287, 1327, 1382
HpyF10VI GCNNNNNNNGC 6 cut(s) 147, 383, 817, 988, 1017, 1058
HpyF3I CTNAG 5 cut(s) 45, 117, 689, 744, 918
HpySE526I ACGT 4 cut(s) 393, 853, 943, 951
Hsp92II CATG 6 cut(s) 485, 520, 562, 800, 1024, 1346
Kpn2I TCCGGA 1 cut(s) 469
KpnI GGTACC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 6 cut(s) 205, 240, 259, 1039, 1402, 1417
LmnI GCTCC 3 cut(s) 233, 388, 979
Lsp1109I GCAGC 2 cut(s) 795, 1299
LweI GCATC 3 cut(s) 730, 1314, 1369
MabI ACCWGGT 1 cut(s) 109
MaeI CTAG 1 cut(s) 1188
MaeII ACGT 4 cut(s) 393, 853, 943, 951
MaeIII GTNAC 3 cut(s) 477, 1338, 1363
MalI GATC 6 cut(s) 207, 242, 261, 1041, 1404, 1419
MbiI CCGCTC 1 cut(s) 1152
MboI GATC 6 cut(s) 205, 240, 259, 1039, 1402, 1417
MflI RGATCY 1 cut(s) 1039
MhlI GDGCHC 4 cut(s) 393, 429, 984, 1187
MluCI AATT 7 cut(s) 28, 171, 354, 694, 863, 1157, 1167
MlyI GAGTC 3 cut(s) 101, 626, 1259
MmeI TCCRAC 3 cut(s) 211, 1356, 1430
Mph1103I ATGCAT 1 cut(s) 1384
MroI TCCGGA 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 1 cut(s) 1462
MslI CAYNNNNRTG 1 cut(s) 255
MspI CCGG 2 cut(s) 470, 1310
MspR9I CCNGG 2 cut(s) 111, 341
MvaI CCWGG 2 cut(s) 111, 341
MwoI GCNNNNNNNGC 6 cut(s) 147, 383, 817, 988, 1017, 1058
NcoI CCATGG 1 cut(s) 516
NdeII GATC 6 cut(s) 205, 240, 259, 1039, 1402, 1417
NlaIII CATG 6 cut(s) 485, 520, 562, 800, 1024, 1346
NlaIV GGNNCC 2 cut(s) 108, 1305
NmuCI GTSAC 2 cut(s) 477, 1338
NsiI ATGCAT 1 cut(s) 1384
NspI RCATGY 1 cut(s) 485
NspV TTCGAA 1 cut(s) 33
OliI CACNNNNGTG 1 cut(s) 255
PaeR7I CTCGAG 1 cut(s) 12
PciI ACATGT 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 1 cut(s) 1268
PfoI TCCNGGA 1 cut(s) 339
PinAI ACCGGT 1 cut(s) 1309
PkrI GCNGC 3 cut(s) 73, 810, 1289
PleI GAGTC 3 cut(s) 100, 625, 1258
PmaCI CACGTG 1 cut(s) 394
PmlI CACGTG 1 cut(s) 394
PpsI GAGTC 3 cut(s) 100, 625, 1258
Ppu21I YACGTR 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 910
PscI ACATGT 1 cut(s) 481
Psp5II RGGWCCY 1 cut(s) 910
Psp6I CCWGG 2 cut(s) 109, 339
PspCI CACGTG 1 cut(s) 394
PspGI CCWGG 2 cut(s) 109, 339
PspN4I GGNNCC 2 cut(s) 108, 1305
PspPI GGNCC 1 cut(s) 910
PspPPI RGGWCCY 1 cut(s) 910
PstI CTGCAG 1 cut(s) 1289
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 1039
RsaI GTAC 5 cut(s) 108, 572, 890, 933, 1016
RsaNI GTAC 5 cut(s) 107, 571, 889, 932, 1015
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 1 cut(s) 1462
SatI GCNGC 3 cut(s) 72, 809, 1288
Sau3AI GATC 6 cut(s) 205, 240, 259, 1039, 1402, 1417
Sau96I GGNCC 1 cut(s) 910
SchI GAGTC 3 cut(s) 101, 626, 1259
ScrFI CCNGG 2 cut(s) 111, 341
SduI GDGCHC 4 cut(s) 393, 429, 984, 1187
SexAI ACCWGGT 1 cut(s) 109
SfaNI GCATC 3 cut(s) 730, 1314, 1369
SfcI CTRYAG 3 cut(s) 430, 1285, 1319
Sfr274I CTCGAG 1 cut(s) 12
SfuI TTCGAA 1 cut(s) 33
SinI GGWCC 1 cut(s) 910
SlaI CTCGAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 4 cut(s) 12, 422, 1043, 1053
SmoI CTYRAG 4 cut(s) 12, 422, 1043, 1053
Sse9I AATT 7 cut(s) 28, 171, 354, 694, 863, 1157, 1167
SsiI CCGC 7 cut(s) 71, 296, 320, 386, 758, 1018, 1152
SspMI CTAG 1 cut(s) 1188
StyD4I CCNGG 2 cut(s) 109, 339
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 1 cut(s) 417
TaiI ACGT 4 cut(s) 396, 856, 946, 954
TaqI TCGA 3 cut(s) 13, 33, 1420
TasI AATT 7 cut(s) 28, 171, 354, 694, 863, 1157, 1167
TatI WGTACW 1 cut(s) 931
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 1268
Tru1I TTAA 1 cut(s) 1462
Tru9I TTAA 1 cut(s) 1462
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 2 cut(s) 477, 1338
TseI GCWGC 2 cut(s) 808, 1287
Tsp45I GTSAC 2 cut(s) 477, 1338
TspDTI ATGAA 6 cut(s) 342, 575, 813, 856, 956, 1148
TspGWI ACGGA 2 cut(s) 986, 1262
TspRI CASTG 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 910
XagI CCTNNNNNAGG 1 cut(s) 917
XapI RAATTY 3 cut(s) 28, 354, 863
XbaI TCTAGA 1 cut(s) 1187
XceI RCATGY 1 cut(s) 485
XhoI CTCGAG 1 cut(s) 12
XmiI GTMKAC 2 cut(s) 95, 627
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 1 cut(s) 1188
Zsp2I ATGCAT 1 cut(s) 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.