Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008610

Physical Location & Seq

Genomic Coordinates Forward (+)

31956475 .. 31958293

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32620.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTGCCCTGATTTTGACCTGTGTATAGAGTGTTTTTCTGTTGGAGCTGAGGTGACATCCCACAAAAGCAACCACTCTTACAGGGTTATGGACAATTTATCTTTCCCACTTATTTGCCCAGACTGGAATGCAGATGATGAAATACTGCTCCTGGAGGCAACTGAAATGTATGGATTGGGGAACTGGGCTGAAGTTGCTGAGCATGTTGGGACGAAGAGTAAAGAGCAATGCATAGAACACTACACAAATGTTTATTTGAACTCACAGTACTTTCCTCTTCCGGACATGTCACATGTTGTTGGAAAAAATAGAAAGGAGCTTCTTGCTATGGCTAAAGGGCATGGCGAGGACAAGAAAGGATTTCCTACACTGGGGGATCATAATTTGAAGGAGGAATCTCCATTTTCTCCTTCAAGAACCAAAGTGGAAGATACGCACAAAGGTGGCCCCTCTGGCCGTTTAATGTCTAGCATGAACTCTGATGTAGAATCTGGACTTCGCTCTAGTGGTGCAAACGTGGCAGCAGCAGCAGCCGGTAACAAGAAACCATCCAGCATGGCCCAGGTTAAAGATGGTCCTGGTGTCATTAAACTGGAAGGTGATGCAAAGTTTCCACCTATAAATTGGTTATATGTGCTAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

215

Amino Acids

23.41

Weight (kDa)

5.47

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16420 AT4G16420 AT4G16420
fragaria_vesca	FvH4_3g00550 FvH4_3g00550
malus_domestica	MD00G1057900.v1.1 MD10G1336800.v1.1
prunus_persica	Prupe.4G006600_v2.0.a1 Prupe.4G006600_v2.0.a1 Prupe.4G006600_v2.0.a1
pyrus_communis	pycom05g32620 pycom10g28630
rosa_chinensis	RchiOBHm_Chr5g0000751
rosa_laevigata	RLG00000030892
rosa_roxburghii	Rroxscaffold_1G00075480
rosa_rugosa	Rorug04G0386200 Rorug04G0386200
rosa_samantha	Rh1BG031800 Rh5AG006200 Rh5BG008000 Rh5CG006700 Rh5DG006700
rosa_wichuraiana	Rw5G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	280
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	454
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	371
AflIII	ACRYGT	2 cut(s)	285, 292
AgsI	TTSAA	3 cut(s)	259, 388, 414
AjnI	CCWGG	3 cut(s)	150, 561, 577
AleI	CACNNNNGTG	1 cut(s)	441
AluBI	AGCT	2 cut(s)	47, 319
AluI	AGCT	2 cut(s)	47, 319
AlwI	GGATC	1 cut(s)	384
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	3 cut(s)	445, 454, 558
ApeKI	GCWGC	4 cut(s)	521, 524, 527, 530
AspS9I	GGNCC	3 cut(s)	446, 559, 575
AsuHPI	GGTGA	2 cut(s)	64, 611
AvaII	GGWCC	1 cut(s)	575
BaeGI	GKGCMC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	4 cut(s)	533, 536, 539, 542
BccI	CCATC	2 cut(s)	556, 566
BceAI	ACGGC	1 cut(s)	441
BciT130I	CCWGG	3 cut(s)	152, 563, 579
BfaI	CTAG	2 cut(s)	468, 504
BglI	GCCNNNNNGGC	1 cut(s)	453
BisI	GCNGC	4 cut(s)	522, 525, 528, 531
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	4 cut(s)	523, 526, 529, 532
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	3 cut(s)	152, 563, 579
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	3 cut(s)	446, 559, 575
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	3 cut(s)	152, 563, 579
BmrI	ACTGGG	2 cut(s)	193, 380
BmsI	GCATC	1 cut(s)	592
BmuI	ACTGGG	2 cut(s)	193, 380
BpmI	CTGGAG	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	4 cut(s)	128, 188, 375, 597
Bse3DI	GCAATG	1 cut(s)	233
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	3 cut(s)	152, 563, 579
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	56, 548
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	39, 189
BseNI	ACTGG	4 cut(s)	128, 188, 375, 597
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	533, 536, 539, 542
BshFI	GGCC	3 cut(s)	447, 456, 560
BsiSI	CCGG	2 cut(s)	281, 534
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	447, 456, 560
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	376
Bsp1720I	GCTNAGC	1 cut(s)	198
BspANI	GGCC	3 cut(s)	447, 456, 560
BspCNI	CTCAG	2 cut(s)	40, 190
BspEI	TCCGGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	448
BspPI	GGATC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	4 cut(s)	128, 188, 375, 597
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	1 cut(s)	376
Bst2UI	CCWGG	3 cut(s)	152, 563, 579
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	2 cut(s)	209, 282
BstDEI	CTNAG	2 cut(s)	48, 198
BstF5I	GGATG	2 cut(s)	56, 548
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	5 cut(s)	194, 453, 518, 527, 530
BstNI	CCWGG	3 cut(s)	152, 563, 579
BstNSI	RCATGY	3 cut(s)	206, 289, 296
BstSCI	CCNGG	3 cut(s)	150, 561, 577
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	4 cut(s)	533, 536, 539, 542
BsuRI	GGCC	3 cut(s)	447, 456, 560
BtsCI	GGATG	2 cut(s)	56, 548
BtsIMutI	CAGTG	1 cut(s)	368
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	3 cut(s)	446, 559, 575
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	6 cut(s)	203, 286, 293, 341, 472, 556
CviJI	RGCY	8 cut(s)	47, 188, 319, 332, 447, 456, 533, 560
CviKI_1	RGCY	8 cut(s)	47, 188, 319, 332, 447, 456, 533, 560
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	48, 198
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	209, 282
EarI	CTCTTC	2 cut(s)	209, 282
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	210
EcoRII	CCWGG	3 cut(s)	150, 561, 577
EcoT22I	ATGCAT	1 cut(s)	233
FaeI	CATG	6 cut(s)	206, 289, 296, 344, 475, 559
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	6 cut(s)	202, 285, 292, 340, 471, 555
Fnu4HI	GCNGC	4 cut(s)	522, 525, 528, 531
FokI	GGATG	2 cut(s)	43, 535
Fsp4HI	GCNGC	4 cut(s)	522, 525, 528, 531
FspBI	CTAG	2 cut(s)	468, 504
GluI	GCNGC	4 cut(s)	522, 525, 528, 531
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	447, 456, 560
HapII	CCGG	2 cut(s)	281, 534
Hin1II	CATG	6 cut(s)	206, 289, 296, 344, 475, 559
HinfI	GANTC	2 cut(s)	395, 488
HpaII	CCGG	2 cut(s)	281, 534
HphI	GGTGA	2 cut(s)	64, 611
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	3 cut(s)	281, 414, 492
HpyAV	CCTTC	3 cut(s)	382, 420, 590
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	4 cut(s)	131, 231, 512, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	194, 453, 518, 527, 530
HpyF3I	CTNAG	2 cut(s)	48, 198
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	6 cut(s)	206, 289, 296, 344, 475, 559
Kpn2I	TCCGGA	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	3 cut(s)	44, 153, 316
Lsp1109I	GCAGC	4 cut(s)	533, 536, 539, 542
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	2 cut(s)	468, 504
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	3 cut(s)	52, 288, 536
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	3 cut(s)	226, 269, 440
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	94, 382, 622
MmeI	TCCRAC	2 cut(s)	22, 280
MnlI	CCTC	6 cut(s)	43, 148, 285, 340, 385, 460
Mph1103I	ATGCAT	1 cut(s)	233
MroI	TCCGGA	1 cut(s)	280
MseI	TTAA	3 cut(s)	461, 567, 588
MslI	CAYNNNNRTG	1 cut(s)	441
MspI	CCGG	2 cut(s)	281, 534
MspR9I	CCNGG	3 cut(s)	152, 563, 579
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	3 cut(s)	152, 563, 579
MwoI	GCNNNNNNNGC	5 cut(s)	194, 453, 518, 527, 530
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	6 cut(s)	206, 289, 296, 344, 475, 559
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	52, 288
NsiI	ATGCAT	1 cut(s)	233
NspI	RCATGY	3 cut(s)	206, 289, 296
OliI	CACNNNNGTG	1 cut(s)	441
PciI	ACATGT	2 cut(s)	285, 292
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	395, 488
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	4 cut(s)	523, 526, 529, 532
PscI	ACATGT	2 cut(s)	285, 292
Psp6I	CCWGG	3 cut(s)	150, 561, 577
PspGI	CCWGG	3 cut(s)	150, 561, 577
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	3 cut(s)	446, 559, 575
PsrI	GAACNNNNNNTAC	2 cut(s)	251, 283
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	3 cut(s)	461, 567, 588
SatI	GCNGC	4 cut(s)	522, 525, 528, 531
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	3 cut(s)	446, 559, 575
ScaI	AGTACT	1 cut(s)	269
ScrFI	CCNGG	3 cut(s)	152, 563, 579
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	9 cut(s)	21, 49, 54, 321, 445, 519, 567, 601, 619
SfaNI	GCATC	1 cut(s)	592
SfiI	GGCCNNNNNGGCC	1 cut(s)	453
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	441
Sse9I	AATT	3 cut(s)	94, 382, 622
SspMI	CTAG	2 cut(s)	468, 504
StyD4I	CCNGG	3 cut(s)	150, 561, 577
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	1 cut(s)	519
TasI	AATT	3 cut(s)	94, 382, 622
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	395, 488
Tru1I	TTAA	3 cut(s)	461, 567, 588
Tru9I	TTAA	3 cut(s)	461, 567, 588
TscAI	CASTG	1 cut(s)	375
TseFI	GTSAC	2 cut(s)	52, 288
TseI	GCWGC	4 cut(s)	521, 524, 527, 530
Tsp45I	GTSAC	2 cut(s)	52, 288
TspDTI	ATGAA	2 cut(s)	153, 488
TspRI	CASTG	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	575
XceI	RCATGY	3 cut(s)	206, 289, 296
XcmI	CCANNNNNNNNNTGG	2 cut(s)	569, 621
XspI	CTAG	2 cut(s)	468, 504
ZrmI	AGTACT	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.