Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008610

Physical Location & Seq

Genomic Coordinates Forward (+)

4303066 .. 4305649

Gene Structure 2584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG031800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGTCATTCTCGTGGAAACTTTCACTCCGATGAGGACCCCACTCAGAGATCAAGGAGAAAGAAGAATGCATCCAGTGGAGAGAATTTAGAATCTTCAGCTGCAGGTCAGGGGAAGAGTGAAGGAAAAAGGGCTTATCACTGCAATTATTGCAACAAAGACATTACGGGGAAGATCCGAATCAAGTGCAATTCTTGCCCTGATTTTGACCTATGTATAGAGTGTTTCTCTGTAGGAGCAGAGCTGACATCTCATAAAAGCTATCACCCTTACCAAGTTTTGTGTGATTGTGGAATCCTTGAAGCCCTGAAGGTGGTTAGCTTGCCTGAAGACAGTAAATTTGCCGACCTAGGATCTATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

121

Amino Acids

13.32

Weight (kDa)

6.93

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZZ	PF00569	44 - 78	4.2e-10	Zinc finger, ZZ type
ZZ_ADA2	PF25299	48 - 94	4.9e-16	ADA2 ZZ-type zing finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16420 AT4G16420 AT4G16420
fragaria_vesca	FvH4_3g00550 FvH4_3g00550
malus_domestica	MD00G1057900.v1.1 MD10G1336800.v1.1
prunus_persica	Prupe.4G006600_v2.0.a1 Prupe.4G006600_v2.0.a1 Prupe.4G006600_v2.0.a1
pyrus_communis	pycom05g32620 pycom10g28630
rosa_chinensis	RchiOBHm_Chr5g0000751
rosa_laevigata	RLG00000030892
rosa_roxburghii	Rroxscaffold_1G00075480
rosa_rugosa	Rorug04G0386200 Rorug04G0386200
rosa_samantha	Rh1BG031800 Rh5AG006200 Rh5BG008000 Rh5CG006700 Rh5DG006700
rosa_wichuraiana	Rw5G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	95
AclWI	GGATC	2 cut(s)	169, 361
AcsI	RAATTY	2 cut(s)	85, 338
AcuI	CTGAAG	3 cut(s)	81, 329, 348
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	1 cut(s)	302
AluBI	AGCT	4 cut(s)	101, 244, 261, 321
AluI	AGCT	4 cut(s)	101, 244, 261, 321
AlwI	GGATC	2 cut(s)	169, 361
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	85, 338
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspA2I	CCTAGG	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	37
AvrII	CCTAGG	1 cut(s)	349
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	102, 231
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	1 cut(s)	102
BlnI	CCTAGG	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BsaBI	GATNNNNATC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	71
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	50, 174, 353
BspCNI	CTCAG	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	169, 361
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	3 cut(s)	50, 174, 353
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	349
Bst2BI	CACGAG	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	110
BstAPI	GCANNNNNTGC	2 cut(s)	150, 195
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	3 cut(s)	53, 177, 356
BstMBI	GATC	3 cut(s)	50, 174, 353
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 195
BstSFI	CTRYAG	2 cut(s)	102, 231
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	2 cut(s)	174, 353
BstYI	RGATCY	2 cut(s)	174, 353
BtsCI	GGATG	1 cut(s)	71
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	82, 139
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	37
CviJI	RGCY	6 cut(s)	101, 134, 244, 261, 305, 321
CviKI_1	RGCY	6 cut(s)	101, 134, 244, 261, 305, 321
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	3 cut(s)	52, 176, 355
DpnII	GATC	3 cut(s)	50, 174, 353
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	3 cut(s)	81, 329, 348
EcoO109I	RGGNCCY	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	349
FaiI	YATR	4 cut(s)	214, 218, 255, 359
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	1 cut(s)	102
HinfI	GANTC	3 cut(s)	92, 180, 294
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	3 cut(s)	31, 48, 179
HpyAV	CCTTC	2 cut(s)	116, 304
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	5 cut(s)	71, 104, 144, 153, 189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 195
HpyF3I	CTNAG	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	50, 174, 353
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	6 cut(s)	88, 90, 95, 213, 320, 339
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	350
MalI	GATC	3 cut(s)	52, 176, 355
MboI	GATC	3 cut(s)	50, 174, 353
MboII	GAAGA	5 cut(s)	76, 87, 127, 184, 341
MflI	RGATCY	2 cut(s)	174, 353
MluCI	AATT	4 cut(s)	85, 145, 190, 338
MnlI	CCTC	1 cut(s)	28
Mph1103I	ATGCAT	1 cut(s)	73
MseI	TTAA	1 cut(s)	364
MslI	CAYNNNNRTG	2 cut(s)	12, 30
MspA1I	CMGCKG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	73
MwoI	GCNNNNNNNGC	2 cut(s)	150, 195
NdeII	GATC	3 cut(s)	50, 174, 353
NlaIV	GGNNCC	1 cut(s)	39
NsiI	ATGCAT	1 cut(s)	73
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	3 cut(s)	92, 180, 294
PkrI	GCNGC	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	37
PspPPI	RGGWCCY	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	106
PsuI	RGATCY	2 cut(s)	174, 353
PvuII	CAGCTG	1 cut(s)	101
RseI	CAYNNNNRTG	2 cut(s)	12, 30
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	3 cut(s)	50, 174, 353
Sau96I	GGNCC	1 cut(s)	37
SetI	ASST	8 cut(s)	103, 109, 213, 246, 263, 315, 323, 351
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	2 cut(s)	102, 231
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	2 cut(s)	12, 30
Sse9I	AATT	4 cut(s)	85, 145, 190, 338
SspMI	CTAG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	335
TasI	AATT	4 cut(s)	85, 145, 190, 338
TfiI	GAWTC	3 cut(s)	92, 180, 294
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TscAI	CASTG	2 cut(s)	82, 146
TseI	GCWGC	1 cut(s)	101
TspRI	CASTG	2 cut(s)	82, 146
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	2 cut(s)	85, 338
XmaJI	CCTAGG	1 cut(s)	349
XspI	CTAG	1 cut(s)	350
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.