Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008610

Physical Location & Seq

Genomic Coordinates Reverse (-)

441305 .. 446445

Gene Structure 5141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG006700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGGTCGTTCTCGTGGAAACTTTCACTCCGATGAGGACCCCACTCAGAGATCAAGGAGAAAGAAGAATGCATCCAGTGGAGAGAATTTAGAATCTTCAGCTGCAGGTCAGGGGAAGAGTGAAGGGAAAAGGGCTTATCACTGCAATTATTGCAACAAAGACATTACGGGGAAGATCCGAATCAAGTGCAATTCTTGCCCTGATTTTGACCTATGTATAGAGTGTTTCTCTGTAGGAGCAGAGCTGACATCTCATAAAAGCTATCACCCTTACCAAGTTTTGGACAATTTGTCTTTCCCACTTATCTGCCCAGACTGGAATGCAGATGATGAAATACTGCTTCTGGAGGCAACTGAAATGTATGGACTGGGGAACTGGGCTGAAGTTGCTGAGCATGTTGGGACAAAGAGTAAAGAACAATGTATAGAACACTATACGAATGTCTATTTGAACTCTCCATACTTTCCTCTTCCGGACATGTCTCACGTTGTTGGAAAAAATAGAAAGGAGCTTCTTGCTATGGCTAAAGGGCATGGTGAGGACAAAAAAGGATTTCCTATGCTCGGGGATCACAATGTGAAGGAGGAATCTCCATTTTCTCCTTCAAGAATCAAATTGGAAGATTCACACAAAGGTGGCCCCTCTAGCCGTTTACTGTCTAGCATCAACACTGATGCAGAATCTGGAGTTCGCTCTAGTGGTGCAAGTGTGGCAGCAACAGCTGGTCACAAGAAGCCATCCAACATGACACAGATTAAAGATGGTCCTGGTGTCTTTAAAGTGGAAGAACCTCAAGTTGGCAGGAAAGGCAAGAAACCAAGTTCTTTGGTGAATGAGGGTCCTTCTTTAGTTGAGATGAGTGGTTATAACCCCAAAAGGCAGGAGTTTGATCCTGAATACGATAATGATTCTGAACAGTTATTGGCTGATATGGAATTTAAGGATAATGACACTGAGGATGAACGTGAGCTGAAGTTAAGAGTGCTGCGAATCTATTCAAAGAGACTTGATGAGAGGAAGCGTAGAAAGGATTTCATACTAGAAAGAAATTTATTATATCCAAATCCTTTTGAAAAGGACTTATCTCCGGAAGAAAAGGCGATATGTCGACGTTATGATGTCTTCATGTGCTTCCACTCCAAAGAAGAGCATACAGAATTACTTCAAACTGTTATTGGAGAGCATCGAACTCTGAAAAGGATCCAAGAACTTAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

406

Amino Acids

46.04

Weight (kDa)

6.3

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZZ	PF00569	44 - 78	3.1e-09	Zinc finger, ZZ type
ZZ_ADA2	PF25299	48 - 94	4e-15	ADA2 ZZ-type zing finger
Myb_DNA-binding	PF00249	105 - 148	9.3e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	106 - 151	9.3e-06	Myb-like DNA-binding domain
TADA2A-like_3rd	PF22941	286 - 358	5.4e-28	Transcriptional adapter 2-alpha-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16420 AT4G16420 AT4G16420
fragaria_vesca	FvH4_3g00550 FvH4_3g00550
malus_domestica	MD00G1057900.v1.1 MD10G1336800.v1.1
prunus_persica	Prupe.4G006600_v2.0.a1 Prupe.4G006600_v2.0.a1 Prupe.4G006600_v2.0.a1
pyrus_communis	pycom05g32620 pycom10g28630
rosa_chinensis	RchiOBHm_Chr5g0000751
rosa_laevigata	RLG00000030892
rosa_roxburghii	Rroxscaffold_1G00075480
rosa_rugosa	Rorug04G0386200 Rorug04G0386200
rosa_samantha	Rh1BG031800 Rh5AG006200 Rh5BG008000 Rh5CG006700 Rh5DG006700
rosa_wichuraiana	Rw5G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	867
Acc36I	ACCTGC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	1108
AccIII	TCCGGA	2 cut(s)	472, 1087
AclWI	GGATC	5 cut(s)	169, 576, 884, 1195, 1208
AcsI	RAATTY	3 cut(s)	85, 935, 1048
AcuI	CTGAAG	3 cut(s)	81, 402, 992
AdeI	CACNNNGTG	1 cut(s)	577
AfiI	CCNNNNNNNGG	3 cut(s)	280, 563, 797
AflII	CTTAAG	1 cut(s)	1211
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	5 cut(s)	451, 606, 999, 1073, 1166
AhdI	GACNNNNNGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	766
AjuI	GAANNNNNNNTTGG	2 cut(s)	780, 812
AleI	CACNNNNGTG	1 cut(s)	633
AluBI	AGCT	6 cut(s)	101, 244, 261, 511, 722, 970
AluI	AGCT	6 cut(s)	101, 244, 261, 511, 722, 970
Alw26I	GTCTC	2 cut(s)	486, 997
AlwI	GGATC	5 cut(s)	169, 576, 884, 1195, 1208
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	563
Aor13HI	TCCGGA	2 cut(s)	472, 1087
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	3 cut(s)	101, 713, 985
ApoI	RAATTY	3 cut(s)	85, 935, 1048
Asp700I	GAANNNNTTC	2 cut(s)	994, 1161
AspS9I	GGNCC	4 cut(s)	37, 638, 764, 839
AsuHPI	GGTGA	3 cut(s)	257, 548, 841
AvaI	CYCGRG	1 cut(s)	563
AvaII	GGWCC	3 cut(s)	37, 764, 839
BamHI	GGATCC	1 cut(s)	1200
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	1114
BbvI	GCAGC	3 cut(s)	88, 725, 972
BccI	CCATC	2 cut(s)	745, 755
BceAI	ACGGC	1 cut(s)	633
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BciT130I	CCWGG	1 cut(s)	768
BcoDI	GTCTC	2 cut(s)	486, 997
BfaI	CTAG	4 cut(s)	645, 660, 696, 1040
BfmI	CTRYAG	2 cut(s)	102, 231
BfrI	CTTAAG	1 cut(s)	1211
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	3 cut(s)	102, 714, 986
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	3 cut(s)	103, 715, 987
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	3 cut(s)	37, 764, 839
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	4 cut(s)	37, 638, 764, 839
BmiI	GGNNCC	4 cut(s)	39, 640, 840, 1202
BmrFI	CCNGG	1 cut(s)	768
BmrI	ACTGGG	2 cut(s)	377, 385
BmsI	GCATC	4 cut(s)	80, 664, 672, 1192
BmuI	ACTGGG	2 cut(s)	377, 385
BpiI	GAAGAC	1 cut(s)	1114
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	2 cut(s)	365, 705
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	777
BsaBI	GATNNNNATC	1 cut(s)	179
BsaWI	WCCGGW	2 cut(s)	472, 1087
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 563, 797
Bse1I	ACTGG	4 cut(s)	75, 320, 372, 380
Bse8I	GATNNNNATC	1 cut(s)	179
BseAI	TCCGGA	2 cut(s)	472, 1087
BseBI	CCWGG	1 cut(s)	768
BseGI	GGATG	3 cut(s)	71, 737, 964
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	3 cut(s)	280, 563, 797
BseMII	CTCAG	3 cut(s)	59, 381, 945
BseNI	ACTGG	4 cut(s)	75, 320, 372, 380
BseXI	GCAGC	3 cut(s)	88, 725, 972
BshFI	GGCC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	2 cut(s)	473, 1088
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	3 cut(s)	280, 563, 797
BsmAI	GTCTC	2 cut(s)	486, 997
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	2 cut(s)	73, 325
BsnI	GGCC	1 cut(s)	639
BsoBI	CYCGRG	1 cut(s)	563
Bsp13I	TCCGGA	2 cut(s)	472, 1087
Bsp143I	GATC	5 cut(s)	50, 174, 568, 889, 1200
Bsp1720I	GCTNAGC	1 cut(s)	390
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	3 cut(s)	58, 382, 946
BspEI	TCCGGA	2 cut(s)	472, 1087
BspLI	GGNNCC	4 cut(s)	39, 640, 840, 1202
BspMAI	CTGCAG	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	95
BspPI	GGATC	5 cut(s)	169, 576, 884, 1195, 1208
BspQI	GCTCTTC	1 cut(s)	1140
BspTI	CTTAAG	1 cut(s)	1211
BsrI	ACTGG	4 cut(s)	75, 320, 372, 380
BssMI	GATC	5 cut(s)	50, 174, 568, 889, 1200
BssSI	CACGAG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	3 cut(s)	657, 918, 1171
Bst6I	CTCTTC	3 cut(s)	110, 474, 1140
BstAFI	CTTAAG	1 cut(s)	1211
BstAPI	GCANNNNNTGC	2 cut(s)	150, 195
BstDEI	CTNAG	3 cut(s)	45, 390, 954
BstF5I	GGATG	3 cut(s)	71, 737, 964
BstKTI	GATC	5 cut(s)	53, 177, 571, 892, 1203
BstMAI	GTCTC	2 cut(s)	486, 997
BstMBI	GATC	5 cut(s)	50, 174, 568, 889, 1200
BstMWI	GCNNNNNNNGC	7 cut(s)	150, 195, 386, 645, 710, 719, 807
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	2 cut(s)	398, 481
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	2 cut(s)	102, 231
BstV1I	GCAGC	3 cut(s)	88, 725, 972
BstV2I	GAAGAC	1 cut(s)	1114
BstX2I	RGATCY	2 cut(s)	174, 1200
BstYI	RGATCY	2 cut(s)	174, 1200
BsuRI	GGCC	1 cut(s)	639
BtsCI	GGATG	3 cut(s)	71, 737, 964
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	4 cut(s)	82, 139, 669, 951
BveI	ACCTGC	1 cut(s)	95
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr13I	GGNCC	4 cut(s)	37, 638, 764, 839
CviAII	CATG	5 cut(s)	395, 478, 533, 745, 1126
DdeI	CTNAG	3 cut(s)	45, 390, 954
DpnI	GATC	5 cut(s)	52, 176, 570, 891, 1202
DpnII	GATC	5 cut(s)	50, 174, 568, 889, 1200
DraI	TTTAAA	1 cut(s)	778
DraIII	CACNNNGTG	1 cut(s)	577
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1104I	CTCTTC	3 cut(s)	110, 474, 1140
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	3 cut(s)	110, 474, 1140
Eco47I	GGWCC	3 cut(s)	37, 764, 839
Eco57I	CTGAAG	3 cut(s)	81, 402, 992
Eco88I	CYCGRG	1 cut(s)	563
EcoO109I	RGGNCCY	2 cut(s)	37, 839
EcoRII	CCWGG	1 cut(s)	766
EcoT22I	ATGCAT	1 cut(s)	73
FaeI	CATG	5 cut(s)	398, 481, 536, 748, 1129
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	5 cut(s)	394, 477, 532, 744, 1125
FblI	GTMKAC	1 cut(s)	1108
Fnu4HI	GCNGC	3 cut(s)	102, 714, 986
FokI	GGATG	3 cut(s)	58, 724, 971
Fsp4HI	GCNGC	3 cut(s)	102, 714, 986
FspBI	CTAG	4 cut(s)	645, 660, 696, 1040
GluI	GCNGC	3 cut(s)	102, 714, 986
GsuI	CTGGAG	2 cut(s)	365, 705
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	2 cut(s)	473, 1088
Hin1II	CATG	5 cut(s)	398, 481, 536, 748, 1129
HincII	GTYRAC	1 cut(s)	1109
HindII	GTYRAC	1 cut(s)	1109
HinfI	GANTC	8 cut(s)	92, 180, 587, 609, 623, 680, 908, 990
HpaII	CCGG	2 cut(s)	473, 1088
HphI	GGTGA	3 cut(s)	257, 548, 841
Hpy166II	GTNNAC	2 cut(s)	653, 1109
Hpy188I	TCNGA	5 cut(s)	31, 48, 179, 913, 1194
Hpy188III	TCNNGA	6 cut(s)	344, 473, 606, 684, 893, 1088
Hpy8I	GTNNAC	2 cut(s)	653, 1109
Hpy99I	CGWCG	1 cut(s)	1113
HpyAV	CCTTC	4 cut(s)	116, 574, 612, 852
HpyCH4III	ACNGT	3 cut(s)	657, 918, 1171
HpyCH4IV	ACGT	3 cut(s)	486, 964, 1111
HpyCH4V	TGCA	8 cut(s)	71, 104, 144, 153, 189, 323, 677, 704
HpyF10VI	GCNNNNNNNGC	7 cut(s)	150, 195, 386, 645, 710, 719, 807
HpyF3I	CTNAG	3 cut(s)	45, 390, 954
HpySE526I	ACGT	3 cut(s)	486, 964, 1111
Hsp92II	CATG	5 cut(s)	398, 481, 536, 748, 1129
Kpn2I	TCCGGA	2 cut(s)	472, 1087
Kzo9I	GATC	5 cut(s)	50, 174, 568, 889, 1200
LguI	GCTCTTC	1 cut(s)	1140
LmnI	GCTCC	2 cut(s)	236, 508
Lsp1109I	GCAGC	3 cut(s)	88, 725, 972
LweI	GCATC	4 cut(s)	80, 664, 672, 1192
MaeI	CTAG	4 cut(s)	645, 660, 696, 1040
MaeII	ACGT	3 cut(s)	486, 964, 1111
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	5 cut(s)	52, 176, 570, 891, 1202
MboI	GATC	5 cut(s)	50, 174, 568, 889, 1200
MflI	RGATCY	2 cut(s)	174, 1200
MluCI	AATT	8 cut(s)	85, 145, 190, 286, 614, 935, 1048, 1157
MmeI	TCCRAC	2 cut(s)	472, 765
Mph1103I	ATGCAT	1 cut(s)	73
MroI	TCCGGA	2 cut(s)	472, 1087
MroXI	GAANNNNTTC	2 cut(s)	994, 1161
MseI	TTAA	5 cut(s)	756, 777, 939, 977, 1212
MslI	CAYNNNNRTG	2 cut(s)	30, 633
MspA1I	CMGCKG	2 cut(s)	101, 722
MspCI	CTTAAG	1 cut(s)	1211
MspI	CCGG	2 cut(s)	473, 1088
MspR9I	CCNGG	1 cut(s)	768
Mva1269I	GAATGC	2 cut(s)	73, 325
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	7 cut(s)	150, 195, 386, 645, 710, 719, 807
NdeII	GATC	5 cut(s)	50, 174, 568, 889, 1200
NlaIII	CATG	5 cut(s)	398, 481, 536, 748, 1129
NlaIV	GGNNCC	4 cut(s)	39, 640, 840, 1202
NmuCI	GTSAC	1 cut(s)	725
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	2 cut(s)	398, 481
OliI	CACNNNNGTG	1 cut(s)	633
PciI	ACATGT	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	1140
PctI	GAATGC	2 cut(s)	73, 325
PdmI	GAANNNNTTC	2 cut(s)	994, 1161
PfeI	GAWTC	8 cut(s)	92, 180, 587, 609, 623, 680, 908, 990
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	103, 715, 987
PpuMI	RGGWCCY	2 cut(s)	37, 839
PscI	ACATGT	1 cut(s)	477
PsiI	TTATAA	1 cut(s)	867
Psp5II	RGGWCCY	2 cut(s)	37, 839
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	4 cut(s)	39, 640, 840, 1202
PspPI	GGNCC	4 cut(s)	37, 638, 764, 839
PspPPI	RGGWCCY	2 cut(s)	37, 839
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	2 cut(s)	174, 1200
PvuII	CAGCTG	2 cut(s)	101, 722
RseI	CAYNNNNRTG	2 cut(s)	30, 633
SalI	GTCGAC	1 cut(s)	1107
SapI	GCTCTTC	1 cut(s)	1140
SaqAI	TTAA	5 cut(s)	756, 777, 939, 977, 1212
SatI	GCNGC	3 cut(s)	102, 714, 986
Sau3AI	GATC	5 cut(s)	50, 174, 568, 889, 1200
Sau96I	GGNCC	4 cut(s)	37, 638, 764, 839
ScrFI	CCNGG	1 cut(s)	768
SfaNI	GCATC	4 cut(s)	80, 664, 672, 1192
SfcI	CTRYAG	2 cut(s)	102, 231
SinI	GGWCC	3 cut(s)	37, 764, 839
SmiMI	CAYNNNNRTG	2 cut(s)	30, 633
SmlI	CTYRAG	2 cut(s)	792, 1211
SmoI	CTYRAG	2 cut(s)	792, 1211
Sse9I	AATT	8 cut(s)	85, 145, 190, 286, 614, 935, 1048, 1157
SspMI	CTAG	4 cut(s)	645, 660, 696, 1040
StyD4I	CCNGG	1 cut(s)	766
TaaI	ACNGT	3 cut(s)	657, 918, 1171
TaiI	ACGT	3 cut(s)	489, 967, 1114
TaqI	TCGA	2 cut(s)	1108, 1186
TasI	AATT	8 cut(s)	85, 145, 190, 286, 614, 935, 1048, 1157
TfiI	GAWTC	8 cut(s)	92, 180, 587, 609, 623, 680, 908, 990
Tru1I	TTAA	5 cut(s)	756, 777, 939, 977, 1212
Tru9I	TTAA	5 cut(s)	756, 777, 939, 977, 1212
TscAI	CASTG	4 cut(s)	82, 146, 676, 958
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	3 cut(s)	101, 713, 985
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	4 cut(s)	345, 975, 1024, 1114
TspRI	CASTG	4 cut(s)	82, 146, 676, 958
Van91I	CCANNNNNTGG	1 cut(s)	280
Vha464I	CTTAAG	1 cut(s)	1211
VpaK11BI	GGWCC	3 cut(s)	37, 764, 839
XapI	RAATTY	3 cut(s)	85, 935, 1048
XceI	RCATGY	2 cut(s)	398, 481
XmiI	GTMKAC	1 cut(s)	1108
XmnI	GAANNNNTTC	2 cut(s)	994, 1161
XspI	CTAG	4 cut(s)	645, 660, 696, 1040
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.