Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008610

Physical Location & Seq

Genomic Coordinates Reverse (-)

542752 .. 547927

Gene Structure 5176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG008000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGTCGTTCTCGTGGAAACTTTCACTCCGATGAGGACCCCACTCAGAGATCAAGGAGAAAGAAGAATGCATCCAGTGGAGAGAATTTAGAATCTTCAGCTGCAGGTCAGGGGAAGAGTGAAGGAAAAAGGGCTTATCACTGCAATTATTGCAACAAAGACATTACGGGGAAGATCCGAATCAAGTGCAATTCTTGCCCTGATTTTGACCTATGTATAGAGTGTTTCTCTGTAGGAGCAGAGCTGACATCTCATAAAAGCTATCACCCTTACCAAGTTTTGGACAATTTGTCTTTCCCACTTATCTGCCCAGACTGGAATGCAGATGATGAAATACTGCTTCTGGAGGCAACTGAAATGTATGGACTGGGGAACTGGGCTGAAGTTGCTGAGCATGTTGGGACAAAGAGTAAAGAACAATGTATAGAACACTATACGAATGTCTATTTGAACTCGCCATACTTTCCTCTTCCGGACATGTCTCACGTTGTTGGAAAAAATAGAAAGGAGCTTCTTGCTATGGCTAAAGGGCATGGTGAGGACAAAAAAGGATTTCCTATGCTCGGGGATCACAATGTGAAGGAGGAATCTCCATTTTCTCCTTCAAGAATCAAATTGGAAGATTCACACAAAAGTGGCCCCTCTAGCCGTTTACTGTCTAGCATCAACACTGATGCAGAATCCGGAGTTCGCTCTAGTGGTGCAAGTGTGGCAGCAACAGCTGGTCACAAGAAGCCATCCAACATGACACAGGTTAAAGATGGTCCTGGTGTCTTTAAAGTGGAAGGTTGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

265

Amino Acids

29.07

Weight (kDa)

6.6

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZZ	PF00569	44 - 78	1.7e-09	Zinc finger, ZZ type
ZZ_ADA2	PF25299	48 - 94	2.1e-15	ADA2 ZZ-type zing finger
Myb_DNA-binding	PF00249	105 - 148	5e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	106 - 151	4.9e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16420 AT4G16420 AT4G16420
fragaria_vesca	FvH4_3g00550 FvH4_3g00550
malus_domestica	MD00G1057900.v1.1 MD10G1336800.v1.1
prunus_persica	Prupe.4G006600_v2.0.a1 Prupe.4G006600_v2.0.a1 Prupe.4G006600_v2.0.a1
pyrus_communis	pycom05g32620 pycom10g28630
rosa_chinensis	RchiOBHm_Chr5g0000751
rosa_laevigata	RLG00000030892
rosa_roxburghii	Rroxscaffold_1G00075480
rosa_rugosa	Rorug04G0386200 Rorug04G0386200
rosa_samantha	Rh1BG031800 Rh5AG006200 Rh5BG008000 Rh5CG006700 Rh5DG006700
rosa_wichuraiana	Rw5G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccIII	TCCGGA	2 cut(s)	472, 683
AclWI	GGATC	2 cut(s)	169, 576
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	2 cut(s)	81, 402
AdeI	CACNNNGTG	1 cut(s)	577
AfaI	GTAC	1 cut(s)	793
AfiI	CCNNNNNNNGG	2 cut(s)	280, 563
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	2 cut(s)	451, 606
AhdI	GACNNNNNGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	766
AleI	CACNNNNGTG	1 cut(s)	633
AluBI	AGCT	5 cut(s)	101, 244, 261, 511, 722
AluI	AGCT	5 cut(s)	101, 244, 261, 511, 722
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	2 cut(s)	169, 576
Ama87I	CYCGRG	1 cut(s)	563
Aor13HI	TCCGGA	2 cut(s)	472, 683
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	2 cut(s)	101, 713
ApoI	RAATTY	1 cut(s)	85
AspS9I	GGNCC	3 cut(s)	37, 638, 764
AsuHPI	GGTGA	2 cut(s)	257, 548
AvaI	CYCGRG	1 cut(s)	563
AvaII	GGWCC	2 cut(s)	37, 764
BauI	CACGAG	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	88, 725
BccI	CCATC	2 cut(s)	745, 755
BceAI	ACGGC	1 cut(s)	633
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BciT130I	CCWGG	1 cut(s)	768
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	3 cut(s)	645, 660, 696
BfmI	CTRYAG	2 cut(s)	102, 231
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	102, 714
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	2 cut(s)	103, 715
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	2 cut(s)	37, 764
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	3 cut(s)	37, 638, 764
BmiI	GGNNCC	2 cut(s)	39, 640
BmrFI	CCNGG	1 cut(s)	768
BmrI	ACTGGG	2 cut(s)	377, 385
BmsI	GCATC	3 cut(s)	80, 664, 672
BmuI	ACTGGG	2 cut(s)	377, 385
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	1 cut(s)	365
Bpu1102I	GCTNAGC	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	179
BsaWI	WCCGGW	2 cut(s)	472, 683
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 563
Bse1I	ACTGG	4 cut(s)	75, 320, 372, 380
Bse8I	GATNNNNATC	1 cut(s)	179
BseAI	TCCGGA	2 cut(s)	472, 683
BseBI	CCWGG	1 cut(s)	768
BseGI	GGATG	2 cut(s)	71, 737
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	280, 563
BseMII	CTCAG	2 cut(s)	59, 381
BseNI	ACTGG	4 cut(s)	75, 320, 372, 380
BseXI	GCAGC	2 cut(s)	88, 725
BshFI	GGCC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	2 cut(s)	473, 684
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	280, 563
BsmAI	GTCTC	1 cut(s)	486
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	2 cut(s)	73, 325
BsnI	GGCC	1 cut(s)	639
BsoBI	CYCGRG	1 cut(s)	563
Bsp13I	TCCGGA	2 cut(s)	472, 683
Bsp1407I	TGTACA	1 cut(s)	791
Bsp143I	GATC	3 cut(s)	50, 174, 568
Bsp1720I	GCTNAGC	1 cut(s)	390
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	2 cut(s)	58, 382
BspEI	TCCGGA	2 cut(s)	472, 683
BspLI	GGNNCC	2 cut(s)	39, 640
BspMAI	CTGCAG	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	169, 576
BsrGI	TGTACA	1 cut(s)	791
BsrI	ACTGG	4 cut(s)	75, 320, 372, 380
BssMI	GATC	3 cut(s)	50, 174, 568
BssSI	CACGAG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	1 cut(s)	657
Bst6I	CTCTTC	2 cut(s)	110, 474
BstAPI	GCANNNNNTGC	2 cut(s)	150, 195
BstAUI	TGTACA	1 cut(s)	791
BstDEI	CTNAG	2 cut(s)	45, 390
BstF5I	GGATG	2 cut(s)	71, 737
BstKTI	GATC	3 cut(s)	53, 177, 571
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	3 cut(s)	50, 174, 568
BstMWI	GCNNNNNNNGC	6 cut(s)	150, 195, 386, 645, 710, 719
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	2 cut(s)	398, 481
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	2 cut(s)	102, 231
BstV1I	GCAGC	2 cut(s)	88, 725
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	71, 737
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	82, 139, 669
BveI	ACCTGC	1 cut(s)	95
Cfr13I	GGNCC	3 cut(s)	37, 638, 764
Csp6I	GTAC	1 cut(s)	792
CviAII	CATG	4 cut(s)	395, 478, 533, 745
CviQI	GTAC	1 cut(s)	792
DdeI	CTNAG	2 cut(s)	45, 390
DpnI	GATC	3 cut(s)	52, 176, 570
DpnII	GATC	3 cut(s)	50, 174, 568
DraI	TTTAAA	1 cut(s)	778
DraIII	CACNNNGTG	1 cut(s)	577
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1104I	CTCTTC	2 cut(s)	110, 474
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	2 cut(s)	110, 474
Eco47I	GGWCC	2 cut(s)	37, 764
Eco57I	CTGAAG	2 cut(s)	81, 402
Eco88I	CYCGRG	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	766
EcoT22I	ATGCAT	1 cut(s)	73
FaeI	CATG	4 cut(s)	398, 481, 536, 748
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	4 cut(s)	394, 477, 532, 744
Fnu4HI	GCNGC	2 cut(s)	102, 714
FokI	GGATG	2 cut(s)	58, 724
Fsp4HI	GCNGC	2 cut(s)	102, 714
FspBI	CTAG	3 cut(s)	645, 660, 696
GluI	GCNGC	2 cut(s)	102, 714
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	2 cut(s)	473, 684
Hin1II	CATG	4 cut(s)	398, 481, 536, 748
HinfI	GANTC	6 cut(s)	92, 180, 587, 609, 623, 680
HpaII	CCGG	2 cut(s)	473, 684
HphI	GGTGA	2 cut(s)	257, 548
Hpy166II	GTNNAC	1 cut(s)	653
Hpy188I	TCNGA	3 cut(s)	31, 48, 179
Hpy188III	TCNNGA	4 cut(s)	344, 473, 606, 684
Hpy8I	GTNNAC	1 cut(s)	653
HpyAV	CCTTC	4 cut(s)	116, 574, 612, 779
HpyCH4III	ACNGT	1 cut(s)	657
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	8 cut(s)	71, 104, 144, 153, 189, 323, 677, 704
HpyF10VI	GCNNNNNNNGC	6 cut(s)	150, 195, 386, 645, 710, 719
HpyF3I	CTNAG	2 cut(s)	45, 390
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	4 cut(s)	398, 481, 536, 748
Kpn2I	TCCGGA	2 cut(s)	472, 683
Kzo9I	GATC	3 cut(s)	50, 174, 568
LmnI	GCTCC	2 cut(s)	236, 508
Lsp1109I	GCAGC	2 cut(s)	88, 725
LweI	GCATC	3 cut(s)	80, 664, 672
MaeI	CTAG	3 cut(s)	645, 660, 696
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	3 cut(s)	52, 176, 570
MboI	GATC	3 cut(s)	50, 174, 568
MboII	GAAGA	6 cut(s)	76, 87, 127, 184, 461, 632
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	5 cut(s)	85, 145, 190, 286, 614
MmeI	TCCRAC	2 cut(s)	472, 765
MnlI	CCTC	6 cut(s)	28, 340, 477, 532, 577, 652
Mph1103I	ATGCAT	1 cut(s)	73
MroI	TCCGGA	2 cut(s)	472, 683
MseI	TTAA	2 cut(s)	756, 777
MslI	CAYNNNNRTG	2 cut(s)	30, 633
MspA1I	CMGCKG	2 cut(s)	101, 722
MspI	CCGG	2 cut(s)	473, 684
MspR9I	CCNGG	1 cut(s)	768
Mva1269I	GAATGC	2 cut(s)	73, 325
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	6 cut(s)	150, 195, 386, 645, 710, 719
NdeII	GATC	3 cut(s)	50, 174, 568
NlaIII	CATG	4 cut(s)	398, 481, 536, 748
NlaIV	GGNNCC	2 cut(s)	39, 640
NmuCI	GTSAC	1 cut(s)	725
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	2 cut(s)	398, 481
OliI	CACNNNNGTG	1 cut(s)	633
PciI	ACATGT	1 cut(s)	477
PctI	GAATGC	2 cut(s)	73, 325
PfeI	GAWTC	6 cut(s)	92, 180, 587, 609, 623, 680
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	103, 715
PpuMI	RGGWCCY	1 cut(s)	37
PscI	ACATGT	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	2 cut(s)	39, 640
PspPI	GGNCC	3 cut(s)	37, 638, 764
PspPPI	RGGWCCY	1 cut(s)	37
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PstI	CTGCAG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	174
PvuII	CAGCTG	2 cut(s)	101, 722
RsaI	GTAC	1 cut(s)	793
RsaNI	GTAC	1 cut(s)	792
RseI	CAYNNNNRTG	2 cut(s)	30, 633
SaqAI	TTAA	2 cut(s)	756, 777
SatI	GCNGC	2 cut(s)	102, 714
Sau3AI	GATC	3 cut(s)	50, 174, 568
Sau96I	GGNCC	3 cut(s)	37, 638, 764
ScrFI	CCNGG	1 cut(s)	768
SfaNI	GCATC	3 cut(s)	80, 664, 672
SfcI	CTRYAG	2 cut(s)	102, 231
SinI	GGWCC	2 cut(s)	37, 764
SmiMI	CAYNNNNRTG	2 cut(s)	30, 633
Sse9I	AATT	5 cut(s)	85, 145, 190, 286, 614
SspMI	CTAG	3 cut(s)	645, 660, 696
StyD4I	CCNGG	1 cut(s)	766
TaaI	ACNGT	1 cut(s)	657
TaiI	ACGT	1 cut(s)	489
TasI	AATT	5 cut(s)	85, 145, 190, 286, 614
TatI	WGTACW	1 cut(s)	791
TfiI	GAWTC	6 cut(s)	92, 180, 587, 609, 623, 680
Tru1I	TTAA	2 cut(s)	756, 777
Tru9I	TTAA	2 cut(s)	756, 777
TscAI	CASTG	3 cut(s)	82, 146, 676
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	2 cut(s)	101, 713
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	3 cut(s)	82, 146, 676
Van91I	CCANNNNNTGG	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	37, 764
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	2 cut(s)	398, 481
XspI	CTAG	3 cut(s)	645, 660, 696
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.