Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010254

Physical Location & Seq

Genomic Coordinates Reverse (-)

9333620 .. 9336072

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16566.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGGGAGTGAATCAGGCGTGTATCTTCTGTGAGATCGTGCGAAATCCAACCACTACTCGTCTCCTTCACACCGATGAGAAAGTCATCGCCTTTCAAGACATCAAGCCTGCAGCCCAGAGGCACTATTTGGTGATTCCAAAAGAACATATTCCTACTGTGAATGACCTTCAGAGAAGAGATGAAGACTACTCACTTGTAAGACACATGCTTAGTGTGGGACAACAACTGTTGCAGAAAGATGCTCCTCAAAGCATTCATAGATTTGGTTTTCACCAGCCACCATTTAACAGTGTTGATCATCTCCATCTCCACTGTTTTGCATTGCCTTATGTGCCCAGATGGAAAGCCATCAAGTACAAGTCTTTGGGACCTTTGGGTGGATTTATTGAAGCCGAGACACTGCTAGAGAAGATAAGGCCTCTTCTTTCAAAGGGGTTTGTACTGGTTGCAGTGCATGAGATCATCATCATCATCCTATTCCAGCTTAACTGGTGCAGATGTGTTCTTGCGACATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004779 GO:0004780 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0070566 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DcpS_C

Protein Analysis

173

Amino Acids

19.85

Weight (kDa)

8.87

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	8 - 118	6.7e-31	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	20 - 107	2.6e-12	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16566 AT4G16566 AT4G16566
fragaria_vesca	FvH4_5g18810
malus_domestica	MD04G1063700.v1.1
prunus_persica	Prupe.5G068700_v2.0.a1 Prupe.5G068700_v2.0.a1 Prupe.5G068700_v2.0.a1 Prupe.5G068700_v2.0.a1
pyrus_communis	pycom04g05750 pycom06g04860
rosa_chinensis	RchiOBHm_Chr7g0203161
rosa_laevigata	RLG00000003547
rosa_multiflora	Rmu_sc0014667.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254030
rosa_rugosa	Rorug07G0074700
rosa_samantha	Rh7AG203900 Rh7BG203200 Rh7CG214800 Rh7DG210600
rosa_wichuraiana	Rw7G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	2 cut(s)	359, 444
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	98, 392, 432
AluBI	AGCT	1 cut(s)	487
AluI	AGCT	1 cut(s)	487
Alw26I	GTCTC	2 cut(s)	68, 392
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	145, 266
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	3 cut(s)	315, 336, 359
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	68, 392
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	372
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	450, 497
Bse3DI	GCAATG	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	467
BseGI	GGATG	1 cut(s)	474
BseJI	GATNNNNATC	1 cut(s)	467
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	323
BseNI	ACTGG	2 cut(s)	450, 497
BseRI	GAGGAG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	517
BshFI	GGCC	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	234, 384
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	2 cut(s)	68, 392
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	234, 384
BsmI	GAATGC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	36, 298, 462
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	372
BspMAI	CTGCAG	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	450, 497
BssMI	GATC	3 cut(s)	36, 298, 462
Bst4CI	ACNGT	4 cut(s)	160, 231, 293, 317
Bst6I	CTCTTC	2 cut(s)	172, 429
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	474
BstKTI	GATC	3 cut(s)	39, 301, 465
BstMAI	GTCTC	2 cut(s)	68, 392
BstMBI	GATC	3 cut(s)	36, 298, 462
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNSI	RCATGY	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	421
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	474
BtsI	GCAGTG	2 cut(s)	401, 459
BtsIMutI	CAGTG	4 cut(s)	298, 313, 401, 459
Cac8I	GCNNGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	358, 443
CviAII	CATG	2 cut(s)	208, 458
CviJI	RGCY	7 cut(s)	109, 116, 280, 350, 395, 421, 487
CviKI_1	RGCY	7 cut(s)	109, 116, 280, 350, 395, 421, 487
CviQI	GTAC	2 cut(s)	358, 443
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	3 cut(s)	38, 300, 464
DpnII	GATC	3 cut(s)	36, 298, 462
Eam1104I	CTCTTC	2 cut(s)	172, 429
EarI	CTCTTC	2 cut(s)	172, 429
Eco147I	AGGCCT	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	211, 461
FaiI	YATR	6 cut(s)	150, 209, 261, 333, 459, 520
FaqI	GGGAC	2 cut(s)	234, 384
FatI	CATG	2 cut(s)	207, 457
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	407
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	421
Hin1II	CATG	2 cut(s)	211, 461
HinfI	GANTC	2 cut(s)	13, 136
HphI	GGTGA	2 cut(s)	145, 266
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	77, 179
HpyCH4III	ACNGT	4 cut(s)	160, 231, 293, 317
HpyCH4V	TGCA	6 cut(s)	113, 235, 323, 452, 457, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	211, 461
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	36, 298, 462
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	8 cut(s)	2, 123, 131, 290, 352, 431, 478, 497
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	407
MalI	GATC	3 cut(s)	38, 300, 464
MboI	GATC	3 cut(s)	36, 298, 462
MboII	GAAGA	5 cut(s)	19, 189, 197, 416, 424
MhlI	GDGCHC	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	3 cut(s)	114, 258, 432
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	2 cut(s)	288, 489
MslI	CAYNNNNRTG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	334
NdeII	GATC	3 cut(s)	36, 298, 462
NlaIII	CATG	2 cut(s)	211, 461
NlaIV	GGNNCC	1 cut(s)	372
NmeAIII	GCCGAG	1 cut(s)	421
NspI	RCATGY	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	421
PctI	GAATGC	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	13, 136
PkrI	GCNGC	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	115
RsaI	GTAC	2 cut(s)	359, 444
RsaNI	GTAC	2 cut(s)	358, 443
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	288, 489
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	3 cut(s)	36, 298, 462
Sau96I	GGNCC	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	3 cut(s)	171, 376, 489
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	75
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	407
StuI	AGGCCT	1 cut(s)	421
TaaI	ACNGT	4 cut(s)	160, 231, 293, 317
TatI	WGTACW	2 cut(s)	357, 442
TfiI	GAWTC	2 cut(s)	13, 136
Tru1I	TTAA	2 cut(s)	288, 489
Tru9I	TTAA	2 cut(s)	288, 489
TscAI	CASTG	4 cut(s)	298, 320, 408, 459
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	198, 248
TspRI	CASTG	4 cut(s)	298, 320, 408, 459
VpaK11BI	GGWCC	1 cut(s)	371
XceI	RCATGY	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.