Rh7BG203200

Histidine triad nucleotide-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010254
Physical Location & Seq
Reverse (-)
16946284 .. 16947208
925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG203200.1

Sequence Viewer

Length: 318 bp
ATGGCGGGAGCCGCGGCAGCTTCACGCTGCATCTTCTGCCAGATCGCCGGAAAATCCTCCTCTACCCCTCTCCTCCACACGGATGAAAAGGTCGTTGCTTTTCAAGACATCAAACCCGCTGCTACAAGGCACTACTTGGTTATTCCTGTGGATCACATCCCAACTGTTAATGATCTTCAAAGGAGACCTGAAGACTACTCTTTGGTAAGTCACATGTTAGAAGTGGGGAAAACACTATTACAAAGAGATGCACCTCAATGCCATCAATACAGGTACATTATGCTCAATTACATTGATTTCGATAAGCTTTTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DcpS_C

Protein Analysis

105

Amino Acids

11.97

Weight (kDa)

6.95

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DcpS_C PF11969 9 - 86 2.9e-20 Scavenger mRNA decapping enzyme C-term binding
HIT PF01230 24 - 95 4.1e-08 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AciI CCGC 4 cut(s) 5, 12, 14, 117
AclWI GGATC 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 2 cut(s) 104, 179
AluBI AGCT 2 cut(s) 20, 307
AluI AGCT 2 cut(s) 20, 307
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 159
ApeKI GCWGC 3 cut(s) 17, 27, 119
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 14, 29, 106
BccI CCATC 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 178
BisI GCNGC 5 cut(s) 12, 15, 18, 28, 120
BlsI GCNGC 5 cut(s) 13, 16, 19, 29, 121
BmiI GGNNCC 1 cut(s) 10
BmsI GCATC 2 cut(s) 39, 238
BpiI GAAGAC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 2 cut(s) 88, 156
BseLI CCNNNNNNNGG 1 cut(s) 79
BseRI GAGGAG 2 cut(s) 49, 62
BseXI GCAGC 3 cut(s) 14, 29, 106
Bsh1236I CGCG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 178
Bsp143I GATC 3 cut(s) 42, 151, 172
BspACI CCGC 4 cut(s) 5, 12, 14, 117
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 3 cut(s) 42, 151, 172
Bst4CI ACNGT 1 cut(s) 166
BstAPI GCANNNNNTGC 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 88, 156
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 3 cut(s) 45, 154, 175
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 3 cut(s) 42, 151, 172
BstMWI GCNNNNNNNGC 3 cut(s) 11, 17, 36
BstNSI RCATGY 1 cut(s) 217
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 14, 29, 106
BstV2I GAAGAC 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 2 cut(s) 88, 156
Cfr42I CCGCGG 1 cut(s) 15
Csp6I GTAC 1 cut(s) 274
CviAII CATG 1 cut(s) 214
CviJI RGCY 3 cut(s) 11, 20, 307
CviKI_1 RGCY 3 cut(s) 11, 20, 307
CviQI GTAC 1 cut(s) 274
DpnI GATC 3 cut(s) 44, 153, 174
DpnII GATC 3 cut(s) 42, 151, 172
Eco31I GGTCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 210
FaeI CATG 1 cut(s) 217
FaiI YATR 2 cut(s) 215, 281
FatI CATG 1 cut(s) 213
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 5 cut(s) 12, 15, 18, 28, 120
FokI GGATG 2 cut(s) 95, 143
Fsp4HI GCNGC 5 cut(s) 12, 15, 18, 28, 120
GluI GCNGC 5 cut(s) 12, 15, 18, 28, 120
HapII CCGG 1 cut(s) 48
Hin1II CATG 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 305
HpaII CCGG 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 30, 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 17, 36
Hsp92II CATG 1 cut(s) 217
KspI CCGCGG 1 cut(s) 15
Kzo9I GATC 3 cut(s) 42, 151, 172
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 5 cut(s) 53, 61, 159, 201, 256
Lsp1109I GCAGC 3 cut(s) 14, 29, 106
LweI GCATC 2 cut(s) 39, 238
MaeIII GTNAC 1 cut(s) 209
MalI GATC 3 cut(s) 44, 153, 174
MboI GATC 3 cut(s) 42, 151, 172
MboII GAAGA 3 cut(s) 25, 167, 203
MluCI AATT 1 cut(s) 286
MnlI CCTC 5 cut(s) 67, 70, 78, 83, 264
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 2 cut(s) 81, 256
MspA1I CMGCKG 2 cut(s) 14, 119
MspI CCGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 11, 17, 36
NdeII GATC 3 cut(s) 42, 151, 172
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 209
NspI RCATGY 1 cut(s) 217
PciI ACATGT 1 cut(s) 213
PkrI GCNGC 5 cut(s) 13, 16, 19, 29, 121
PscI ACATGT 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 10
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 2 cut(s) 81, 256
SacII CCGCGG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 5 cut(s) 12, 15, 18, 28, 120
Sau3AI GATC 3 cut(s) 42, 151, 172
SetI ASST 6 cut(s) 22, 93, 190, 256, 275, 309
SfaNI GCATC 2 cut(s) 39, 238
Sfr303I CCGCGG 1 cut(s) 15
SgrBI CCGCGG 1 cut(s) 15
SmiMI CAYNNNNRTG 2 cut(s) 81, 256
Sse9I AATT 1 cut(s) 286
SsiI CCGC 4 cut(s) 5, 12, 14, 117
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 300
TasI AATT 1 cut(s) 286
TauI GCSGC 2 cut(s) 14, 17
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 3 cut(s) 17, 27, 119
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 99
TspGWI ACGGA 1 cut(s) 95
XceI RCATGY 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.