Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010254

Physical Location & Seq

Genomic Coordinates Reverse (-)

6522293 .. 6524331

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04860.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGGCAGCGGCAGCCGCAGCTTCACCCTGCATCTTCTGCCAGATCGCTGGAAAGCCCACCTCTACCACTCTCCTCCACACCGATGAAAAGGTCGTTGCTTTTCAAGACATCAACCCTGCTGCTGTAAGGCATTATTTGGTTGTTCCAGTGGATCACATTCCAACTGTTAAGGATCTTCAGAGGAGACCTGAAGACTACTCTTTGGTAAGTCACATGTTAGAAGTGGGGAAAAAGCTAATACAACGAGATGCACCGCAATGCCATCAGTACAGATTTGGATTTCATCAGCCTCCATTGAACTCCGTTAACCATCTTCATCTACATTGTTTCGCACTACCTTACACACCCAGATGGAAGTGTATAAAGTATTTGTCTGTGGGATCAATTGGATTTGTTGAAGCTGAAAAGCTGCTGGGCAAGATCAAGCCTTTGCCACCAGGTATTTCAAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DcpS_C

Protein Analysis

153

Amino Acids

16.9

Weight (kDa)

9.16

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16566 AT4G16566 AT4G16566
fragaria_vesca	FvH4_5g18810
malus_domestica	MD04G1063700.v1.1
prunus_persica	Prupe.5G068700_v2.0.a1 Prupe.5G068700_v2.0.a1 Prupe.5G068700_v2.0.a1 Prupe.5G068700_v2.0.a1
pyrus_communis	pycom04g05750 pycom06g04860
rosa_chinensis	RchiOBHm_Chr7g0203161
rosa_laevigata	RLG00000003547
rosa_multiflora	Rmu_sc0014667.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254030
rosa_rugosa	Rorug07G0074700
rosa_samantha	Rh7AG203900 Rh7BG203200 Rh7CG214800 Rh7DG210600
rosa_wichuraiana	Rw7G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 11, 18, 257
AclWI	GGATC	3 cut(s)	162, 183, 391
AcuI	CTGAAG	2 cut(s)	164, 213
AfaI	GTAC	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	4 cut(s)	107, 301, 401, 450
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	4 cut(s)	23, 238, 404, 412
AluI	AGCT	4 cut(s)	23, 238, 404, 412
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	3 cut(s)	162, 183, 391
ApeKI	GCWGC	5 cut(s)	8, 14, 20, 122, 412
AsuHPI	GGTGA	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	5 cut(s)	20, 26, 32, 109, 399
BccI	CCATC	3 cut(s)	273, 321, 348
BciT130I	CCWGG	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	181
BisI	GCNGC	8 cut(s)	6, 9, 12, 15, 18, 21, 123, 413
BlsI	GCNGC	8 cut(s)	7, 10, 13, 16, 19, 22, 124, 414
Bme1390I	CCNGG	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	42, 241
BpiI	GAAGAC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	149
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	441
BseMI	GCAATG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	2 cut(s)	65, 199
BseXI	GCAGC	5 cut(s)	20, 26, 32, 109, 399
BseYI	CCCAGC	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	181
Bso31I	GGTCTC	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	45, 154, 175, 383, 423
BspACI	CCGC	4 cut(s)	5, 11, 18, 257
BspPI	GGATC	3 cut(s)	162, 183, 391
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	149
BssMI	GATC	5 cut(s)	45, 154, 175, 383, 423
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstKTI	GATC	5 cut(s)	48, 157, 178, 386, 426
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	5 cut(s)	45, 154, 175, 383, 423
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 14, 17, 20, 39
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	439
BstV1I	GCAGC	5 cut(s)	20, 26, 32, 109, 399
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	156
CsiI	ACCWGGT	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	8 cut(s)	17, 23, 58, 238, 292, 404, 412, 430
CviKI_1	RGCY	8 cut(s)	17, 23, 58, 238, 292, 404, 412, 430
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	5 cut(s)	47, 156, 177, 385, 425
DpnII	GATC	5 cut(s)	45, 154, 175, 383, 423
Eco31I	GGTCTC	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	164, 213
EcoRII	CCWGG	1 cut(s)	439
FaeI	CATG	1 cut(s)	220
FaiI	YATR	2 cut(s)	218, 365
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	8 cut(s)	6, 9, 12, 15, 18, 21, 123, 413
Fsp4HI	GCNGC	8 cut(s)	6, 9, 12, 15, 18, 21, 123, 413
GluI	GCNGC	8 cut(s)	6, 9, 12, 15, 18, 21, 123, 413
GsaI	CCCAGC	1 cut(s)	419
Hin1II	CATG	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HpaI	GTTAAC	1 cut(s)	310
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	33, 254
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 14, 17, 20, 39
Hsp92II	CATG	1 cut(s)	220
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	45, 154, 175, 383, 423
Lsp1109I	GCAGC	5 cut(s)	20, 26, 32, 109, 399
LweI	GCATC	2 cut(s)	42, 241
MabI	ACCWGGT	1 cut(s)	439
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	5 cut(s)	47, 156, 177, 385, 425
MboI	GATC	5 cut(s)	45, 154, 175, 383, 423
MboII	GAAGA	4 cut(s)	28, 170, 206, 308
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	1 cut(s)	387
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	4 cut(s)	73, 86, 177, 303
MseI	TTAA	2 cut(s)	171, 309
MslI	CAYNNNNRTG	3 cut(s)	84, 259, 352
MspA1I	CMGCKG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	441
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	5 cut(s)	11, 14, 17, 20, 39
NdeII	GATC	5 cut(s)	45, 154, 175, 383, 423
NlaIII	CATG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	212
NspI	RCATGY	1 cut(s)	220
PciI	ACATGT	1 cut(s)	216
PkrI	GCNGC	8 cut(s)	7, 10, 13, 16, 19, 22, 124, 414
PscI	ACATGT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	3 cut(s)	84, 259, 352
SaqAI	TTAA	2 cut(s)	171, 309
SatI	GCNGC	8 cut(s)	6, 9, 12, 15, 18, 21, 123, 413
Sau3AI	GATC	5 cut(s)	45, 154, 175, 383, 423
ScrFI	CCNGG	1 cut(s)	441
SetI	ASST	9 cut(s)	25, 65, 96, 193, 240, 343, 406, 414, 445
SexAI	ACCWGGT	1 cut(s)	439
SfaNI	GCATC	2 cut(s)	42, 241
SmiMI	CAYNNNNRTG	3 cut(s)	84, 259, 352
Sse9I	AATT	1 cut(s)	387
SsiI	CCGC	4 cut(s)	5, 11, 18, 257
StyD4I	CCNGG	1 cut(s)	439
TaaI	ACNGT	1 cut(s)	169
TasI	AATT	1 cut(s)	387
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	3 cut(s)	8, 14, 20
Tru1I	TTAA	2 cut(s)	171, 309
Tru9I	TTAA	2 cut(s)	171, 309
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	5 cut(s)	8, 14, 20, 122, 412
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	3 cut(s)	102, 275, 308
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	1 cut(s)	156
XceI	RCATGY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.