Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010254

Physical Location & Seq

Genomic Coordinates Reverse (-)

10797481 .. 10800024

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGGGAGCCGCGGCAACTTCTCGCTGCATCTTCTGCCAGATCGCCGGAAAAAAATCCTCTACCACTCTCCTCCACACGGATGACAAAGTGGTTGCTTTCCAAGACATCAAACCCGCTGCTTTAAGGCATTACTTGGTTATTCCTGTGGATCACATCCCAACTGTTAATGATCTTCAAAGGAGACCTGAAGACTACACTTTGGTAAGTCACATGTTGGAAGTGGGGAAAACACTGGTACAAAGAGATGCACCTCAGTGCCATCAGTACAGATTTGGCTTTCATCAACCACCATTTAACTCTGTCAACCATCTTCACCTCCATTGTTTTGCACTACCTTATACACCCAGATGGAAACATATAAAATATCTATCCGTGGGATCATTTGGATTCATTGAGGCTGAAAAGTTGTTGGAAAAGATTAAGCCTTTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DcpS_C

Protein Analysis

146

Amino Acids

16.51

Weight (kDa)

9.12

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	9 - 120	2.9e-31	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	21 - 110	3.4e-10	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16566 AT4G16566 AT4G16566
fragaria_vesca	FvH4_5g18810
malus_domestica	MD04G1063700.v1.1
prunus_persica	Prupe.5G068700_v2.0.a1 Prupe.5G068700_v2.0.a1 Prupe.5G068700_v2.0.a1 Prupe.5G068700_v2.0.a1
pyrus_communis	pycom04g05750 pycom06g04860
rosa_chinensis	RchiOBHm_Chr7g0203161
rosa_laevigata	RLG00000003547
rosa_multiflora	Rmu_sc0014667.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254030
rosa_rugosa	Rorug07G0074700
rosa_samantha	Rh7AG203900 Rh7BG203200 Rh7CG214800 Rh7DG210600
rosa_wichuraiana	Rw7G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AciI	CCGC	4 cut(s)	5, 12, 14, 117
AclWI	GGATC	2 cut(s)	159, 388
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	240, 269
AfiI	CCNNNNNNNGG	1 cut(s)	79
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	179
AleI	CACNNNNGTG	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	159, 388
ApeKI	GCWGC	2 cut(s)	27, 119
AsuHPI	GGTGA	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	14, 106
BccI	CCATC	3 cut(s)	270, 318, 345
BcoDI	GTCTC	1 cut(s)	178
BisI	GCNGC	4 cut(s)	12, 15, 28, 120
BlsI	GCNGC	4 cut(s)	13, 16, 29, 121
BmiI	GGNNCC	1 cut(s)	10
BmsI	GCATC	2 cut(s)	39, 238
BpiI	GAAGAC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	12, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	12, 375
BseGI	GGATG	2 cut(s)	88, 156
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	14, 106
Bsh1236I	CGCG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	42, 151, 172, 380
BspACI	CCGC	4 cut(s)	5, 12, 14, 117
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	10
BspPI	GGATC	2 cut(s)	159, 388
BspTNI	GGTCTC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	12, 375
BssMI	GATC	4 cut(s)	42, 151, 172, 380
Bst4CI	ACNGT	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	2 cut(s)	12, 375
BstF5I	GGATG	2 cut(s)	88, 156
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	4 cut(s)	45, 154, 175, 383
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	4 cut(s)	42, 151, 172, 380
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 36
BstNSI	RCATGY	1 cut(s)	217
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	14, 106
BstV2I	GAAGAC	1 cut(s)	198
BtgI	CCRYGG	2 cut(s)	12, 375
BtsCI	GGATG	2 cut(s)	88, 156
BtsIMutI	CAGTG	2 cut(s)	233, 263
Cfr42I	CCGCGG	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	239, 268
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	4 cut(s)	11, 279, 401, 427
CviKI_1	RGCY	4 cut(s)	11, 279, 401, 427
CviQI	GTAC	2 cut(s)	239, 268
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	4 cut(s)	44, 153, 174, 382
DpnII	GATC	4 cut(s)	42, 151, 172, 380
Eco31I	GGTCTC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	210
FaeI	CATG	1 cut(s)	217
FaiI	YATR	4 cut(s)	215, 342, 360, 362
FatI	CATG	1 cut(s)	213
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	4 cut(s)	12, 15, 28, 120
FokI	GGATG	2 cut(s)	95, 143
Fsp4HI	GCNGC	4 cut(s)	12, 15, 28, 120
GluI	GCNGC	4 cut(s)	12, 15, 28, 120
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	30, 251, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 36
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	217
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	42, 151, 172, 380
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	6 cut(s)	53, 61, 159, 201, 221, 361
Lsp1109I	GCAGC	2 cut(s)	14, 106
LweI	GCATC	2 cut(s)	39, 238
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	4 cut(s)	44, 153, 174, 382
MboI	GATC	4 cut(s)	42, 151, 172, 380
MboII	GAAGA	4 cut(s)	25, 167, 203, 305
MmeI	TCCRAC	2 cut(s)	198, 393
MnlI	CCTC	5 cut(s)	70, 83, 264, 329, 391
MseI	TTAA	5 cut(s)	125, 168, 297, 423, 436
MslI	CAYNNNNRTG	3 cut(s)	81, 256, 349
MspA1I	CMGCKG	2 cut(s)	14, 119
MspI	CCGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	11, 36
NdeII	GATC	4 cut(s)	42, 151, 172, 380
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	217
OliI	CACNNNNGTG	1 cut(s)	256
PciI	ACATGT	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	390
PkrI	GCNGC	4 cut(s)	13, 16, 29, 121
PscI	ACATGT	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	10
RsaI	GTAC	2 cut(s)	240, 269
RsaNI	GTAC	2 cut(s)	239, 268
RseI	CAYNNNNRTG	3 cut(s)	81, 256, 349
SacII	CCGCGG	1 cut(s)	15
SaqAI	TTAA	5 cut(s)	125, 168, 297, 423, 436
SatI	GCNGC	4 cut(s)	12, 15, 28, 120
Sau3AI	GATC	4 cut(s)	42, 151, 172, 380
SetI	ASST	4 cut(s)	190, 256, 321, 340
SfaNI	GCATC	2 cut(s)	39, 238
Sfr303I	CCGCGG	1 cut(s)	15
SgrBI	CCGCGG	1 cut(s)	15
SmiMI	CAYNNNNRTG	3 cut(s)	81, 256, 349
SsiI	CCGC	4 cut(s)	5, 12, 14, 117
TaaI	ACNGT	1 cut(s)	166
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	2 cut(s)	14, 17
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	5 cut(s)	125, 168, 297, 423, 436
Tru9I	TTAA	5 cut(s)	125, 168, 297, 423, 436
TscAI	CASTG	2 cut(s)	240, 263
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	2 cut(s)	27, 119
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	272, 382
TspGWI	ACGGA	2 cut(s)	95, 364
TspRI	CASTG	2 cut(s)	240, 263
XceI	RCATGY	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.