Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010254

Physical Location & Seq

Genomic Coordinates Reverse (-)

8416801 .. 8418219

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1063700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGGCAGTAGCAGCCGCAGCTTCACCGTGCATCTTCTGCCAGATCGCCGGAAAATCCACCTCGACCACTCTCTTCCACACTGATGAAAAGGTCGTTGCTTTTCAAGACATCAACCCTGCTGCTGTAAGGCATTACTTGGTTATTCCTGTGGATCACATTCCAACTGTTAAGGATCTTCAGAGGAGACCTGAAGACTACTCTTTGGTAAGTCACATGTTAGAAGTGGGGAAAACGCTAATACAACGAGATGCACCGCAATGCCATCAGTACAGATTTGGATTTCATCAGCCTCCATTCAACTCCGTTAACCATCTTCACCTACATTGTTTTGCACTACCCTACACACCCAGGCAAGCTATTTGGGGTTTTCATACTTGTTTTGTACCTCGGGGATTTCTCTTACATGATTATATCCTGCTAGTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DcpS_C

Protein Analysis

144

Amino Acids

16.28

Weight (kDa)

8.34

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	11 - 117	9.4e-30	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	23 - 111	3.9e-10	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16566 AT4G16566 AT4G16566
fragaria_vesca	FvH4_5g18810
malus_domestica	MD04G1063700.v1.1
prunus_persica	Prupe.5G068700_v2.0.a1 Prupe.5G068700_v2.0.a1 Prupe.5G068700_v2.0.a1 Prupe.5G068700_v2.0.a1
pyrus_communis	pycom04g05750 pycom06g04860
rosa_chinensis	RchiOBHm_Chr7g0203161
rosa_laevigata	RLG00000003547
rosa_multiflora	Rmu_sc0014667.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254030
rosa_rugosa	Rorug07G0074700
rosa_samantha	Rh7AG203900 Rh7BG203200 Rh7CG214800 Rh7DG210600
rosa_wichuraiana	Rw7G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 18, 257
AclWI	GGATC	2 cut(s)	162, 183
AcuI	CTGAAG	2 cut(s)	164, 213
AfaI	GTAC	2 cut(s)	272, 387
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	2 cut(s)	107, 301
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	2 cut(s)	23, 359
AluI	AGCT	2 cut(s)	23, 359
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	162, 183
Ama87I	CYCGRG	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	14, 20, 122
AsuHPI	GGTGA	2 cut(s)	18, 311
AvaI	CYCGRG	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	26, 32, 109
BccI	CCATC	2 cut(s)	273, 321
BciT130I	CCWGG	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	422
BisI	GCNGC	5 cut(s)	6, 15, 18, 21, 123
BlsI	GCNGC	5 cut(s)	7, 16, 19, 22, 124
Bme1390I	CCNGG	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	2 cut(s)	42, 241
BpiI	GAAGAC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	350, 389
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	2 cut(s)	350, 389
BseMI	GCAATG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	199
BseXI	GCAGC	3 cut(s)	26, 32, 109
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	181
Bso31I	GGTCTC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	45, 154, 175
BspACI	CCGC	3 cut(s)	5, 18, 257
BspPI	GGATC	2 cut(s)	162, 183
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	350, 389
BssMI	GATC	3 cut(s)	45, 154, 175
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	2 cut(s)	30, 169
Bst6I	CTCTTC	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	357
BstKTI	GATC	3 cut(s)	48, 157, 178
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	3 cut(s)	45, 154, 175
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 14, 20, 39
BstNI	CCWGG	1 cut(s)	352
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	26, 32, 109
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	271, 386
CviAII	CATG	2 cut(s)	217, 407
CviJI	RGCY	4 cut(s)	17, 23, 292, 359
CviKI_1	RGCY	4 cut(s)	17, 23, 292, 359
CviQI	GTAC	2 cut(s)	271, 386
DpnI	GATC	3 cut(s)	47, 156, 177
DpnII	GATC	3 cut(s)	45, 154, 175
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	164, 213
Eco88I	CYCGRG	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	350
FaeI	CATG	2 cut(s)	220, 410
FaiI	YATR	4 cut(s)	218, 375, 408, 414
FatI	CATG	2 cut(s)	216, 406
Fnu4HI	GCNGC	5 cut(s)	6, 15, 18, 21, 123
Fsp4HI	GCNGC	5 cut(s)	6, 15, 18, 21, 123
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	5 cut(s)	6, 15, 18, 21, 123
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	2 cut(s)	220, 410
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HpaI	GTTAAC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	18, 311
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	30, 169
HpyCH4V	TGCA	3 cut(s)	33, 254, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 14, 20, 39
Hsp92II	CATG	2 cut(s)	220, 410
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	45, 154, 175
LpnPI	CCDG	7 cut(s)	56, 64, 132, 162, 204, 337, 364
Lsp1109I	GCAGC	3 cut(s)	26, 32, 109
LweI	GCATC	2 cut(s)	42, 241
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	3 cut(s)	47, 156, 177
MboI	GATC	3 cut(s)	45, 154, 175
MboII	GAAGA	5 cut(s)	28, 67, 170, 206, 308
MflI	RGATCY	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	4 cut(s)	73, 177, 303, 399
MseI	TTAA	2 cut(s)	171, 309
MslI	CAYNNNNRTG	2 cut(s)	84, 259
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	4 cut(s)	11, 14, 20, 39
NdeII	GATC	3 cut(s)	45, 154, 175
NlaIII	CATG	2 cut(s)	220, 410
NmuCI	GTSAC	1 cut(s)	212
NspI	RCATGY	1 cut(s)	220
PciI	ACATGT	1 cut(s)	216
PkrI	GCNGC	5 cut(s)	7, 16, 19, 22, 124
PscI	ACATGT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	272, 387
RsaNI	GTAC	2 cut(s)	271, 386
RseI	CAYNNNNRTG	2 cut(s)	84, 259
SaqAI	TTAA	2 cut(s)	171, 309
SatI	GCNGC	5 cut(s)	6, 15, 18, 21, 123
Sau3AI	GATC	3 cut(s)	45, 154, 175
ScrFI	CCNGG	1 cut(s)	352
SetI	ASST	7 cut(s)	25, 65, 96, 193, 324, 361, 391
SfaNI	GCATC	2 cut(s)	42, 241
SmiMI	CAYNNNNRTG	2 cut(s)	84, 259
SsiI	CCGC	3 cut(s)	5, 18, 257
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	2 cut(s)	30, 169
TaqI	TCGA	1 cut(s)	65
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	2 cut(s)	8, 20
Tru1I	TTAA	2 cut(s)	171, 309
Tru9I	TTAA	2 cut(s)	171, 309
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	3 cut(s)	14, 20, 122
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	3 cut(s)	102, 275, 362
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	1 cut(s)	88
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.