AT4G16850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011685
Physical Location & Seq
Forward (+)
9480046 .. 9481965
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16850.1

Sequence Viewer

Length: 942 bp
ATGATTGAGGTAAAGCGACCTGGTTCTTCCACGCGGATCACCACAACACTCCTTGATTCTTTCATGATTCTTTTCAGAAACAAACACATCTTATTACCAATCTTTGCTTTCATAGCGATCCCTCTCGCAGCCTTACACCTCTCCTTAACTCTTACCTCCTTTCGCCTTAAAAACCATGTCTTTCGTTTAGAAGCCTTAGCTAACGTTGTGCATACACGGTTTGAAGCTAGACAGATTTGGCAAGAGTCTAGAGAAGATGCTGTCTCGCTTTTACATCTCAAATTCCGGTATTTCGTCCCATCCTTTATCCTCTCCTGTATGGCCTCCATAACTGTCATCACATCAACTTCCTTCTCACACCAAGGCATAAACCCATCTCTGAAGTCGTCATTTGCTTCAGTCAAGTCTTCGTGGATGCGAGTAACAGCAACTTCCATCATCGTCTACGGTCTGCTCTTCCTCTACTCACCAATTTCCATGTTTCTATCAGCTCTCGTTGGTTATACACCTACATTGCGTTATCTAATCACGATCCTCTTTCTCGGAGTTGAGGTATACATAATGGCTATAACAGGGCTTGGGTTTGTCGTCTCTGTATTGGAAGAAAGATACGGTTTTGATGCGATTAAGGAAGGAACCGCTCTGATGAAAGGGAGGAGGATAACAGGGTTGGCCTTGGCGGGTGTATTTGTGTTTCTATCGAGTTTCATTGGTCATGGGATGGAGAAGTTGGCGAAGGAGCTAGATATGGACTTGAGCTCAGGGTCGTGGTGGAGGTCGGTGGTTGTGGCCGGTGGGTGGGACGGGTGGAAGCTGGTTTGTATGTATGGGGCTGAGGTTGTGCTGAGTTATGTTGTAATCACTGTTTTTTACTGTGAGTGTAGGAAACGCCATGGTAACAGTTATGCAATTGTTGCTGATGAGGAAGGTCTTGCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

34.97

Weight (kDa)

9.24

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16850
fragaria_vesca FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180
malus_domestica MD13G1261300.v1.1
prunus_persica Prupe.1G096000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0006011
rosa_laevigata RLG00000031383
rosa_multiflora Rmu_sc0002694.1_g000007
rosa_rugosa Rorug04G0419200
rosa_samantha Rh5AG046700 Rh5BG045600 Rh5CG054200 Rh5DG045100
rosa_wichuraiana Rw5G004680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 641
AccI GTMKAC 2 cut(s) 444, 555
AccII CGCG 1 cut(s) 34
AciI CCGC 3 cut(s) 34, 639, 680
AclI AACGTT 1 cut(s) 204
AclWI GGATC 3 cut(s) 44, 112, 526
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 2 cut(s) 381, 401
AfiI CCNNNNNNNGG 1 cut(s) 798
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 6 cut(s) 200, 227, 491, 742, 759, 814
AluI AGCT 6 cut(s) 200, 227, 491, 742, 759, 814
Alw21I GWGCWC 1 cut(s) 761
Alw26I GTCTC 2 cut(s) 268, 595
AlwI GGATC 3 cut(s) 44, 112, 526
AoxI GGCC 3 cut(s) 321, 672, 789
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 31, 459
BanII GRGCYC 1 cut(s) 761
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 761
BbvCI CCTCAGC 1 cut(s) 834
BbvI GCAGC 1 cut(s) 140
BccI CCATC 4 cut(s) 307, 382, 443, 715
BciT130I CCWGG 1 cut(s) 21
BcoDI GTCTC 2 cut(s) 268, 595
BfaI CTAG 3 cut(s) 228, 249, 743
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 637
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 3 cut(s) 247, 405, 610
BpiI GAAGAC 1 cut(s) 399
Bpu10I CCTNAGC 3 cut(s) 196, 760, 834
BpuEI CTTGAG 1 cut(s) 775
BsaJI CCNNGG 3 cut(s) 361, 675, 892
BsaWI WCCGGW 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 1 cut(s) 798
Bse118I RCCGGY 1 cut(s) 791
Bse3DI GCAATG 1 cut(s) 512
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 361, 675, 892
BseGI GGATG 3 cut(s) 299, 420, 726
BseLI CCNNNNNNNGG 1 cut(s) 798
BseMI GCAATG 1 cut(s) 512
BseMII CTCAG 3 cut(s) 774, 825, 836
BseRI GAGGAG 1 cut(s) 670
BseXI GCAGC 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 3 cut(s) 323, 674, 791
BsiHKAI GWGCWC 1 cut(s) 761
BsiSI CCGG 2 cut(s) 286, 792
BslFI GGGAC 2 cut(s) 281, 815
BslI CCNNNNNNNGG 1 cut(s) 798
BsmAI GTCTC 2 cut(s) 268, 595
BsmBI CGTCTC 1 cut(s) 595
BsmFI GGGAC 2 cut(s) 281, 815
BsnI GGCC 3 cut(s) 323, 674, 791
Bsp1286I GDGCHC 1 cut(s) 761
Bsp143I GATC 3 cut(s) 36, 117, 531
Bsp19I CCATGG 1 cut(s) 892
BspACI CCGC 3 cut(s) 34, 639, 680
BspANI GGCC 3 cut(s) 323, 674, 791
BspCNI CTCAG 3 cut(s) 773, 826, 837
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 637
BspPI GGATC 3 cut(s) 44, 112, 526
BspQI GCTCTTC 1 cut(s) 461
BsrBI CCGCTC 1 cut(s) 641
BsrDI GCAATG 1 cut(s) 512
BsrFI RCCGGY 1 cut(s) 791
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 3 cut(s) 361, 675, 892
BssMI GATC 3 cut(s) 36, 117, 531
BssNAI GTATAC 1 cut(s) 556
BssT1I CCWWGG 3 cut(s) 361, 675, 892
Bst1107I GTATAC 1 cut(s) 556
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 7 cut(s) 219, 334, 449, 614, 865, 875, 902
Bst6I CTCTTC 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 914
BstDEI CTNAG 4 cut(s) 196, 760, 834, 845
BstDSI CCRYGG 1 cut(s) 892
BstF5I GGATG 3 cut(s) 299, 420, 726
BstFNI CGCG 1 cut(s) 34
BstKTI GATC 3 cut(s) 39, 120, 534
BstMAI GTCTC 2 cut(s) 268, 595
BstMBI GATC 3 cut(s) 36, 117, 531
BstMWI GCNNNNNNNGC 2 cut(s) 113, 914
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 399
BstZ17I GTATAC 1 cut(s) 556
BsuRI GGCC 3 cut(s) 323, 674, 791
BtgI CCRYGG 1 cut(s) 892
BtsCI GGATG 3 cut(s) 299, 420, 726
BtsIMutI CAGTG 1 cut(s) 861
CciI TCATGA 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 791
CsiI ACCWGGT 1 cut(s) 19
CviAII CATG 5 cut(s) 64, 176, 478, 716, 893
DdeI CTNAG 4 cut(s) 196, 760, 834, 845
DpnI GATC 3 cut(s) 38, 119, 533
DpnII GATC 3 cut(s) 36, 117, 531
EaeI YGGCCR 1 cut(s) 789
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
Ecl136II GAGCTC 1 cut(s) 759
Eco130I CCWWGG 3 cut(s) 361, 675, 892
Eco24I GRGCYC 1 cut(s) 761
Eco53kI GAGCTC 1 cut(s) 759
Eco57I CTGAAG 2 cut(s) 381, 401
EcoICRI GAGCTC 1 cut(s) 759
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 3 cut(s) 361, 675, 892
EcoT38I GRGCYC 1 cut(s) 761
ErhI CCWWGG 3 cut(s) 361, 675, 892
Esp3I CGTCTC 1 cut(s) 595
FaeI CATG 5 cut(s) 67, 179, 481, 719, 896
FaqI GGGAC 2 cut(s) 281, 815
FatI CATG 5 cut(s) 63, 175, 477, 715, 892
FauI CCCGC 1 cut(s) 673
FblI GTMKAC 2 cut(s) 444, 555
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 3 cut(s) 286, 427, 733
FriOI GRGCYC 1 cut(s) 761
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 3 cut(s) 228, 249, 743
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 3 cut(s) 323, 674, 791
HapII CCGG 2 cut(s) 286, 792
Hin1II CATG 5 cut(s) 67, 179, 481, 719, 896
HinfI GANTC 3 cut(s) 56, 67, 245
HpaII CCGG 2 cut(s) 286, 792
HphI GGTGA 2 cut(s) 31, 459
Hpy166II GTNNAC 2 cut(s) 445, 556
Hpy188I TCNGA 4 cut(s) 77, 381, 545, 645
Hpy188III TCNNGA 3 cut(s) 64, 249, 529
Hpy8I GTNNAC 2 cut(s) 445, 556
HpyAV CCTTC 4 cut(s) 361, 626, 730, 920
HpyCH4III ACNGT 7 cut(s) 219, 334, 449, 614, 865, 875, 902
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 2 cut(s) 211, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 914
HpyF3I CTNAG 4 cut(s) 196, 760, 834, 845
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 5 cut(s) 67, 179, 481, 719, 896
Kzo9I GATC 3 cut(s) 36, 117, 531
LguI GCTCTTC 1 cut(s) 461
LmnI GCTCC 1 cut(s) 739
LpnPI CCDG 9 cut(s) 6, 33, 299, 328, 558, 651, 747, 800, 805
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 3 cut(s) 247, 405, 610
MabI ACCWGGT 1 cut(s) 19
MaeI CTAG 3 cut(s) 228, 249, 743
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 421, 896
MalI GATC 3 cut(s) 38, 119, 533
MbiI CCGCTC 1 cut(s) 641
MboI GATC 3 cut(s) 36, 117, 531
MboII GAAGA 5 cut(s) 18, 266, 399, 448, 614
MfeI CAATTG 1 cut(s) 909
MhlI GDGCHC 1 cut(s) 761
MluCI AATT 3 cut(s) 281, 471, 909
MlyI GAGTC 1 cut(s) 254
MseI TTAA 4 cut(s) 146, 168, 627, 940
MspI CCGG 2 cut(s) 286, 792
MspR9I CCNGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 909
MvaI CCWGG 1 cut(s) 21
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 113, 914
NcoI CCATGG 1 cut(s) 892
NdeII GATC 3 cut(s) 36, 117, 531
NlaIII CATG 5 cut(s) 67, 179, 481, 719, 896
NlaIV GGNNCC 1 cut(s) 637
PagI TCATGA 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 461
PfeI GAWTC 2 cut(s) 56, 67
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 761
Psp1406I AACGTT 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 637
SacI GAGCTC 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 461
SaqAI TTAA 4 cut(s) 146, 168, 627, 940
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 3 cut(s) 36, 117, 531
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 1 cut(s) 761
SexAI ACCWGGT 1 cut(s) 19
SfaNI GCATC 3 cut(s) 247, 405, 610
SmlI CTYRAG 1 cut(s) 754
SmoI CTYRAG 1 cut(s) 754
Sse9I AATT 3 cut(s) 281, 471, 909
SsiI CCGC 3 cut(s) 34, 639, 680
SspMI CTAG 3 cut(s) 228, 249, 743
SstI GAGCTC 1 cut(s) 761
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 3 cut(s) 361, 675, 892
TaaI ACNGT 7 cut(s) 219, 334, 449, 614, 865, 875, 902
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 701
TasI AATT 3 cut(s) 281, 471, 909
TfiI GAWTC 2 cut(s) 56, 67
Tru1I TTAA 4 cut(s) 146, 168, 627, 940
Tru9I TTAA 4 cut(s) 146, 168, 627, 940
TscAI CASTG 1 cut(s) 868
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 4 cut(s) 52, 100, 662, 697
TspRI CASTG 1 cut(s) 868
XapI RAATTY 1 cut(s) 281
XbaI TCTAGA 1 cut(s) 248
XmiI GTMKAC 2 cut(s) 444, 555
XspI CTAG 3 cut(s) 228, 249, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.